{11} Top-level open tickets (Future) (962 matches)

Tickets grouped into Requirements, Stories, Tasks which are NOT linked by an open, higher-level ticket in this milestone. (If any bugs have been created by accident these will appear first. Please change them to "Tasks").

From this list, all tickets that are in this milestone are reachable. If a top-level item is closed or moved to another milestone BUT it still contains tickets in the current milestone, those will then appear.

bug (10 matches)

Ticket Summary Component Owner Priority Subtickets Remaining
#13125 Default group selection in webui blocker 0 ???
#13284 ICS Reader - Export error dgault major 0 ???
#13285 ICS Reader - Export error dgault major 0 ???
#13286 ScanR Reader - Identifying Associated Tiff files major 0 ???
#13309 CellSensReader regression major 0 ???
#13314 Native ND2 Reader - Incorrect channel count and pixel size being used dgault major 0 ???
#13317 Zeiss CZI - Unable to open files - IndexOutOfBoundsException dgault major 0 ???
#13324 bfconvert: Errors using -range option with CZI files dgault major 0 ???
#13327 CellH5Writer - Multi series images being overwritten dgault major 0 ???
#13319 Imaris IMS file problems dgault minor 0 ???

requirement (48 matches)

Ticket Summary Component Owner Priority Subtickets Remaining
#1500 Re-import support General jamoore critical 1 1tix @ 0d
#2125 Build revamp Deployment critical 13 2tix @ 0d
#2128 FS Data de-duplication OmeroFs critical 29 33tix @ 15.25d
#2131 Performance improvements critical 10 1tix @ 0d
#2582 Gateway, OMEROGateway, script_utlils unification API critical 15 23tix @ 0.5d
#3523 NDIM initial requirement work General critical 5 7tix @ 0d
#3535 OME-XML/TIFF export General critical 23 19tix @ 9.5d
#5927 Big images, phase 2 General critical 6 5tix @ 9.5d
#6380 New developer documentation Documentation jamoore critical 9 5tix @ 0.1d
#7902 MQ support in backend Services jamoore critical 1
#9942 Server Analysis API API spli critical 8
#814 Improve install/deploy experience Deployment major 21 8tix @ 2.5d
#1360 Add "hidden" flag to remove objects from the user interface (in default cast) API jamoore major 0
#2094 Stable Search General major 10 20tix @ 2.25d
#2617 Session handling corrections major 6 4tix @ 0d
#4041 Data Import General major 6 2tix @ 1d
#4270 HCS Support improvement General major 3 8tix @ 1.1d
#4974 Phase 2 multi-database support major 6 2tix @ 0.5d
#5897 Visualization Insight jburel major 3 10tix @ 0d
#5934 Connection to multiple server versions API major 0
#6201 Web Measurement Tool Web wmoore major 1
#6294 OME File Validation Specification major 5 3tix @ 0.5d
#6299 OME Data Model Development Specification jburel major 13 30tix @ 0d
#7051 Code Review General major 4 7tix @ 1.5d
#7836 Model-Database alignment Specification major 15 16tix @ 0d
#7911 Cache support in backened Services jamoore major 0
#8064 OMERO Statistics General jamoore major 3
#9303 Public data and groups. Phase 2 General major 4 9tix @ 2d
#10608 ImageJ/OMERO interoperability General crueden-x major 4 8tix @ 0d
#800 OMERO properties rework for simplification and central administration Configuration jamoore minor 3 3tix @ 0d
#1856 ScriptingImprovements General jamoore minor 16 48tix @ 22.25d
#1936 Secure Login and Ldap improvements General jamoore minor 6 21tix @ 13d
#2111 HCS Improvements General minor 8 17tix @ 2.5d
#2117 Importer improvements General jburel minor 9 2tix @ 0d
#2624 High-availability of OMERO components minor 0
#2818 Insight Usability Improvements General minor 27 21tix @ 5d
#2911 New Delete system, Phase II minor 11 22tix @ 10.75d
#3289 OME model support in C# General minor 3
#6195 Web Client Usability Improvements Usability minor 18 5tix @ 0d
#10267 Units Support General minor 2
#10940 OMERO.graph service Services minor 0
#13218 Add text/prompt to QA page asking user to please leave e-mail address QA wmoore minor 0
#1963 Concurrency improvements jamoore 5 2tix @ 1d
#2114 Notification system 6 8tix @ 4.25d
#2123 DB improvements 5
#2126 Annotation improvements 5 5tix @ 0d
#2129 Security Improvements 7 1tix @ 0d
#2130 Shares improvement 4

story (55 matches)

Ticket Summary Component Owner Priority Subtickets Remaining
#9165 5.2 DB ORM jamoore blocker 9 6tix @ 0d
#9821 Path/names of files should be sensible to users OmeroFs jamoore blocker 6 1tix @ 0d
#1650 (Re)add RoiRoiLink or similar mechanism (also ImageImageLink) Model jamoore critical 5 4tix @ 0d
#1685 Decide on mutability and background updating of ROIs ROIs jamoore critical 0
#3166 Make OMERO.web and libraries threadsafe Web critical 1
#8361 Advanced FS and Cancel Bin-Services cblackburn critical 3 3tix @ 0d
#8562 Separate annotate and edit WRITE permissions Security jamoore critical 6 2tix @ 0d
#9286 Annotate/Edit WRITE permissions follow up Services critical 3 2tix @ 0d
#9944 Alternative Storage API General spli critical 14 8tix @ 0.2d
#11128 AWT thread review Insight jburel critical 4 4tix @ 0d
#11981 Renaming of packages Bio-Formats critical 1 1tix @ 0d
#1306 Support intelligent querying over ROIs General jamoore major 0
#1307 Provide ROI service for working with server-side ROIs General jamoore major 0
#1649 Exception review API jamoore major 0
#1835 OmeroCpp Improvements OmeroCpp jamoore major 8 5tix @ 0d
#2913 Generalize server-side import extensions points Import major 0
#3159 Limit number of users Performance major 1 1tix @ 0d
#3187 RenderingEngine Evolution General major 14 8tix @ 0d
#4413 Return all values for a Lucene field Search major 0
#4704 Framework for testing JPEG 2000 Advances General major 9 3tix @ 1.8d
#4789 Annotation Manipulation Insight jburel major 4 3tix @ 0d
#5024 Import insight phase II Insight jburel major 10 6tix @ 0d
#6200 Scripting Service in web Web wmoore major 27 3tix @ 0.25d
#7746 Migrate ~/omero to another location Deployment major 2 1tix @ 0d
#9092 Python BlitzGateway API 2 OmeroPy major 11 8tix @ 0d
#9287 Web: groups & user (phase 2) Web web-team@… major 5 3tix @ 1.5d
#9651 HDF Bio-Formats major 5 3tix @ 0d
#9708 Bug: Tags support General major 6 2tix @ 0d
#9977 Import redesign Insight jburel major 2 1tix @ 0d
#10232 Dataset:Image ONE-to-many General major 0
#10643 Session clean up Services major 2 2tix @ 0d
#11012 FS testing General major 5 1tix @ 0d
#11175 Image Import Insight jburel major 7 4tix @ 0d
#11258 OMERO.server test review Services major 34 7tix @ 0d
#11404 Robot testing Framework General major 7 2tix @ 0d
#11456 Comprehensive permissions testing General jburel major 2 1tix @ 0d
#11622 Hudson greener (phase 2) General major 17 5tix @ 0.5d
#11653 Restricting access to the omero Services major 0
#11886 Open With General major 4 3tix @ 0d
#11936 Improve search indexing robustness, performance, and reliability General jballanco-x major 11 2tix @ 0d
#12090 Setting Rendering settings General major 7 2tix @ 0d
#12181 Bio-Formats API improvements Bio-Formats major 5 4tix @ 0d
#12487 Support for tiled image storage and rendering General major 2 2tix @ 0d
#86 Create ITypes interface for meta-work with model. API jamoore minor 0
#113 Define and use meta-attributes on types in DSL. DSL jamoore minor 0
#249 System-Types as audit trail Security jamoore minor 0
#1414 Allow post-acquisition channels General jamoore minor 0
#1509 Interface metadata grouping General jamoore minor 0
#2121 `bin/omero admin diagnostics` Deployment minor 10 6tix @ 0d
#3326 Measurement Tool: Future changes to the measurement tool. Insight minor 17 11tix @ 0d
#3401 Images and Image management in java leaks memory Insight minor 1 1tix @ 0d
#7295 RFE: Ability for changing order of channel setting General minor 0
#10078 Trigger scripts/processes automatically on defined events General spli minor 0
#10084 Tables API cleanups API spli minor 6 2tix @ 0.2d
#11764 Codec support Bio-Formats minor 11 4tix @ 0d

task (849 matches)

Ticket Summary Component Owner Priority Subtickets Remaining
#10181 Bug: configuration_pkey failure in pixeldata Services jamoore blocker ?
#12567 BUG: plate not rendering fully in Windows 8 IE10 Web web-team@… blocker ?
#12642 BUG: Export as OME-TIFF broken Export jburel blocker ?
#118 Hibernate session.merge() is updating non-changed entities. API jamoore critical
#974 Strange "narrowing proxy" warning in log General jamoore critical
#1398 Server permits empty-named users Security jamoore critical
#1585 Import hung on findAll(enums) General jamoore critical
#2142 Remove all compile warnings from SPR 3.0 and HIB 3.5 Deployment jamoore critical 0.5d
#2333 Some system types should have creation/update events ORM critical ?
#2570 Upgrade Hibernate Services jballanco-x critical 0.5d
#2590 Objects created by trigger need real event and session ORM critical ?
#4529 RFE: add read-or-delete-only server flag General critical ?
#4978 RFE: throttle clients who are creating too many stateful services Services jamoore critical ?
#5140 Review non-Enum uses of IQuery.findAll Performance critical ?
#5608 LIM: Importer: False Image/Screen mix Import jburel critical ?
#5768 RFE: subclasses not loaded in Hibernate ORM jamoore critical ?
#5933 LIM: Data access by not-in-group user Security jamoore critical ?
#6314 Webgateway cache - default location Configuration wmoore critical ?
#8756 RFE: Please allow viewing of pixel intensities in web viewer Web web-team@… critical ?
#9137 RFE: Make some services "all-groups" by default. API jamoore critical ?
#9458 Raw pixels bean usage in imageMarshal() Performance cxallan critical 0.5d
#9678 Repository API mapping for OMERO.web webgateway Web cxallan critical ?
#9789 Insight does not correctly view indexed image data Insight jburel critical ?
#10098 Add CSV download to QA2 QA wmoore critical ?
#10187 4.4.x fixes suggested by Bernhard. Services jamoore critical ?
#10304 Bug: Original metadata is unquoted and not safe to parse OmeroPy critical ?
#10325 Introduce ImportSet to API OmeroFs jamoore critical 1.5d
#10359 Bug: getManagedRepo in repository.py is too slow API jamoore critical ?
#10421 Update OMERO.tables backwards_compatibility test API spli critical ?
#10590 RFE: Add id-based Principal API critical ?
#10664 Bug: non-deterministic behavior in RTypes OmeroCpp rleigh critical ?
#10813 Closeable import processes Services critical ?
#10885 UTF-8 text columns require extra index ORM critical ?
#11003 Thumbnail not visible Web atarkowska critical ?
#11035 Bug: CLI chgrp fails when server is under load Client critical ?
#11147 RFE: Error handling in scripts Scripting critical ?
#11205 RFE: Add script to post-archive an original file OmeroFs jamoore critical ?
#11511 On develop, blitz unit tests hang Services critical ?
#11532 Projected image: pixelsService.copyAndResizeImage() workaround Services mtbcarroll critical ?
#11564 RFE: detect full tmp and cleanup Deployment critical ?
#11589 Remove 1.0 encoding setting General critical ?
#11621 Bug: Lack of clear codepath for image import Services critical ?
#11725 Add "importer" role for service units Import critical ?
#11735 Add salt password tests General critical ?
#11849 Bug: server hangs on image error Services critical ?
#11857 BUG: Cannot break import of plate Client jamoore critical ?
#12048 BUG : Import being connection dependent Import critical ?
#12176 RFE: 4.4-5.0 migration of archived original data Deployment jamoore critical ?
#12313 Bug: OME-TIFF export with XML annotation Export jburel critical ?
#12350 RFE: Cannot find search results Insight dlindner critical ?
#12376 RFE: Lucene to index Original Metadata Search jamoore critical ?
#12459 Bug: createImageFromNumpySeq must use tiling OmeroPy wmoore critical ?
#12781 Bug: CLI import to a dataset in a different group to current fails. Import cblackburn critical ?
#12887 uncategorized SQLException for SQL [select ome_nextval(?,?)]; Security atarkowska critical ?
#12906 RFE: Export of metadata within file names Services critical ?
#12966 RFE: warn when unlinking at chown and Move - Insight Insight jburel critical ?
#12990 Cannot delete Share Comment General critical ?
#13033 Service is not being closed OverUsageException Insight jamoore critical ?
#13048 Update permissions async WebAdmin wmoore critical ?
#13075 Bug: importing many files with auto close leaks memory Import jamoore critical ?
#13114 RFE: Add Refresh Thumbnails/Metadata button Insight jburel critical ?
#13156 BUG: export as ome.tiff Services critical ?
#13162 BUG: export as ome.tiff - masks Services critical ?
#13192 BUG: multi-z images tile loading Services pwalczysko critical ?
#13193 ResourceError: Error instantiating pixel buffer General critical ?
#13230 Bug: Cellomics plate view column index off Bio-Formats sbesson critical ?
#13246 LockTimeout due to Inflater infinite loop on APNG (CPU pegged) from QA jamoore critical ?
#77 Unspecified behavior if two QueryParameters with same name are entered. Queries jamoore major
#307 Hibernate improperly handles Permissions components that are null ORM jamoore major
#410 Thumbnail Service Triggering Dirty Session Exception (Document fix) Documentation jamoore major
#591 Impossible to correlate service log output Services jamoore major
#982 Develop our own ActiveServant container with eviction Services jamoore major
#1057 SELECT N+1 issue with annotations and counts Performance jamoore major ?
#1077 Make ImplicitContext and client.getProperties() distinction clearer. Client jamoore major
#1115 Refactor all shared state of `ServiceFactoryI` into `ServantHolder` or similar. General jamoore major ?
#1177 Annotation and Annotator Services jamoore major
#1195 Hibernate throws NPE and OMERO throws InternalException ORM jamoore major
#1206 getCollectionCount does not support PojoOptions Services jburel major
#1217 Projected Image sha1 Services major ?
#1219 Decide on proper Filter.limit handling in ITimeline General jamoore major
#1223 loadContainerHierarchy StackOverflowError Services jamoore major
#1224 ITimeline - event service could use DISTINCT General jamoore major
#1225 ITimeLine and most recent tags General jamoore major
#1256 Java servers may overwrite changed preferences on shutdown General jamoore major
#1290 Add overview of server configuration locations General jamoore major
#1298 Allow changing from root to omero user on init.d script Deployment jamoore major
#1302 bin/omero node stop is broken Deployment jamoore major
#1389 Add identity to log on stateful services General jamoore major ?
#1498 Logging review General jamoore major
#1698 Remaining locking issues ORM jamoore major ?
#1841 Geometry background process never ends jamoore major
#2266 RFE: Plate view could support zooming Web wmoore major ?
#2491 Post-#2214, setConfigValue is no longer persistent/shared. Configuration jamoore major ?
#2585 Add ConstraintViolation exception API major ?
#2897 ISession could destroy sessions Services jamoore major 0.5d
#3846 Create test to check python imports OmeroPy major ?
#3857 get makemovie to work with webgateway Web cneves major 1d
#3863 Next, Previous buttons on feedback page QA atarkowska major ?
#3932 Detect mounted home directories for OMERO_TEMPDIR usage Deployment major ?
#4089 FB 863: Allow sending feedback from loci tools Bio-Formats major
#4097 Add support for Patch-Master electrophysiology files Bio-Formats major
#4098 Add support for datasets produced by Vevo 770 Bio-Formats mlinkert major
#4107 More robust support for 1, 2 and 4 bit images Bio-Formats major
#4111 Add support for Leica OME data Bio-Formats rleigh major 2d
#4113 Add support for .nex file format Bio-Formats major
#4120 Add support for Intervision MV format Bio-Formats major
#4121 Add support for Mirax data Bio-Formats major 2d
#4124 Add support for Matlab matrix files Bio-Formats major
#4125 Add support for OpenEXR files Bio-Formats major
#4126 Allow user to specify dimensions during stack concatenation Bio-Formats major ?
#4128 AVI writer does not support saving tiles Bio-Formats major
#4129 APNG writer does not support saving tiles Bio-Formats major ?
#4131 JPEG-2000 writer does not support saving tiles Bio-Formats major
#4132 JPEG writer does not support saving tiles Bio-Formats major
#4133 OME-XML writer does not support saving tiles Bio-Formats major
#4147 Add support for Varian FID files Bio-Formats major
#4154 Add support for OME-TIFF files produced by Leica Matrix scanner Bio-Formats rleigh major 1d
#4155 Expand (and clean up) use of new 'setWriteSequentially' method Bio-Formats major ?
#4157 Make it easier to get/set the pixels' compression type Bio-Formats major ?
#4159 Add support for DICOM supplement #145 Bio-Formats mlinkert major ?
#4163 Make error message windows more friendly Bio-Formats major
#4167 Writers do not support overwriting metadata Bio-Formats major
#4169 Add support for Micro-CT VOL files Bio-Formats major 1.5d
#4171 Overwriting compressed planes doesn't always work Bio-Formats major
#4177 Certain JPEG-2000 files are not read correctly Bio-Formats major ?
#4179 Add support for Leica Stereo Microscope data Bio-Formats major
#4185 Add support for Zeiss FCS files Bio-Formats major
#4190 Add reader wrapper that provides simpler tile access Bio-Formats major ?
#4622 Button to play through the frames - Feedback 3239 Web major ?
#4853 Restrict the size of byte-arrays that can be requested by users API cxallan major ?
#5076 DOC: Describe gotchas when using Hibernate server-side Documentation jamoore major ?
#5518 BUG: Insight Inconsistant channel previews General jburel major ?
#5690 LIM: session state is not immediately updated Security jburel major ?
#5802 Add further ConcurrencyException handling API jburel major ?
#5891 insight dataset hangs on "Loading..." when web deletes DS General major ?
#6106 @login_required multi-server support Web wmoore major ?
#6251 Stitch Images into Big Image Scripting wmoore major 2d
#6338 omero.gateway still uses IAdmin methods OmeroPy wmoore major ?
#6721 Investigate improving performance of TIFF export with setWriteSequential(false) Bio-Formats major ?
#6747 RFE: Tracking changes Insight jburel major 0.25d
#6824 Add support for .emi files Bio-Formats major ?
#6980 Bug: Check for existance of icegridnode etc on startup Deployment major 0.25d
#7041 RFE: stopping web with 'bin/omero admin stop' Deployment jamoore major ?
#7092 Improve metadata support for Cellomics datasets Bio-Formats mlinkert major ?
#7250 BUG:Paint problem in activity window Insight jburel major ?
#7709 Re-evaluate strategy for assigning channel colors General major ?
#7823 getPlaneRegion calls getPlane Performance major ?
#7906 Move spring configuration to etc/spring Deployment jamoore major ?
#7909 Disk space Admin General jburel major ?
#8169 Caching javascripts in $.getScript() Web cneves major ?
#8172 QA repository cleanup QA atarkowska major ?
#8336 Add support for Zeiss Orion data Bio-Formats major ?
#8389 Agents and static ref Insight jburel major 1.5d
#8392 Insight Make_Movie UI Insight jburel major ?
#8428 Add support for DV-DIF files Bio-Formats major 1d
#8462 RFE: Clients to handle Ice marshal exception API jburel major ?
#8555 Bug: detect ImportError for script and provide different message Scripting jamoore major ?
#8721 BUG:Catch guest log in with specific message Web jamoore major 0.2d
#8768 Bug: Image viewer makes poor use of whitespace Web wmoore major ?
#8792 Add support for .ser files Bio-Formats major ?
#8917 Bug: sliding images Insight jburel major ?
#9061 Units and selection Client major ?
#9069 RFE: Make Movie uses AVI extension for all output formats Scripting major ?
#9222 Bug: Insight viewer pyramid mis-alignment Insight jburel major ?
#9244 Bug: Insight UI freezes if viewing a dataset which is currently being used for import Insight jburel major ?
#9301 replace changePermissions with Chmod API major ?
#9459 Smarter caching of OMERO.webpublic connector Performance cxallan major 0.5d
#9544 Bug: very large .jp2 files do not import correctly Bio-Formats mlinkert major ?
#9591 Integration tests, moving image with acquisition data General jburel major ?
#9592 BUG: SharedResources.openTable with group -1 fails General spli major ?
#9617 RFE: table view of plate Web web-team@… major ?
#9622 Add documentation about the OME-TIFF export functionality Insight jburel major ?
#9669 Remove reference to task bar Insight jburel major ?
#9671 Bug: import file sequences Insight jburel major ?
#9810 Bug: Indexed colour images not imported correctly General major ?
#9838 Django compressor (or similar) Web wmoore major ?
#9841 All jobs should use "admin restart" Deployment major ?
#9853 Bug: Share metadata loading Security jamoore major ?
#9880 RFE: Movie background/channel colours Insight jburel major ?
#9901 Refactor PyramidTiffReader out of MinimalTiffReader Bio-Formats major ?
#9969 BUG: Thumbnail inconsistency with selection across datasets Insight jburel major ?
#10003 Cli: usage statistics per plugin OmeroPy major ?
#10040 Many Channels to 1 Logical Channel Import major ?
#10057 RFE: Script in Web Web wmoore major ?
#10086 Drop support for old versions of PyTables OmeroPy spli major ?
#10108 BUG: PICT Import Issue Insight jburel major ?
#10163 RFE: channel edit and update Web wmoore major ?
#10256 Bug: deleting ManagedRepo directories can cause imports to fail Import major ?
#10327 Bug: Very easy to lose data permenantly when deleting multiply-linked objects Insight jburel major ?
#10352 Viewport 'view' & 'model' separation Web wmoore major ?
#10363 Bug: Race condition opening images before thumbnail load Insight jburel major ?
#10415 Bug: tablestest suite from OmeroPy fails with Python 2.6 OmeroPy jamoore major ?
#10501 RFE: async download methods in gateways API major ?
#10520 Bug: path._base == unicode on Python2.7 OmeroPy spli major ?
#10524 RFE: reset import location tab Insight jburel major ?
#10529 Bug: Bird eye location at init Web wmoore major ?
#10537 omero/client.java should check Ice version Deployment major ?
#10601 Bug: delete plate acquisition Insight jburel major ?
#10630 RFE: Postpone checksum calculation until after import Import jamoore major ?
#10648 Command-line processing via Scripts Example Scripting wmoore major ?
#10667 Bug: Tag display & editing Client major ?
#10690 RFE: better handling of omero.group=-1 in certain write situations Services major ?
#10694 Editing of annotations not asynch Insight jburel major ?
#10702 RFE: Rationalize logging configuration General major ?
#10765 Background task to re-check checksums OmeroFs jamoore major ?
#10797 Memoizer exception handling General jamoore major ?
#10810 Refactor ImportCandidates into Bio-Formats General major ?
#10830 Bug: Import CLI - permissions Import cblackburn major ?
#10841 BUG: Export as jpeg Services jamoore major ?
#10880 RFE: Verify that ImportContainer.getReader() is consulted on import Import jamoore major ?
#10903 Add support for Ariol data Bio-Formats major ?
#10941 Deleting image linked to multiple datasets does not throw exception General wmoore major ?
#10983 Client: ROI with multiple Shapes in different planes Client major ?
#10999 Better, prompter hints from bin/omero admin start Deployment major ?
#11016 RFE: Give MIF feedback on CLI OmeroPy major ?
#11041 BUG: short hang during plate browsing General major ?
#11052 Bug: CLI exc handling needs to consider network issues Client major ?
#11102 BUG: Undetected contrast setting in EM DVs Insight jburel major ?
#11121 Bool parent parameters do not enable/disable group options in web script UI. Web web-team@… major ?
#11126 Bug: overflow on max projection of EMD Services major ?
#11129 RFE: provide user direction after chgrp fail Web web-team@… major ?
#11150 RFE: prevent change of "root" name Security major ?
#11151 RFE: delete/chgrp orphaned images General jburel major ?
#11161 Bug: cli reports (wrongly) unreadable file on server shutdown General major ?
#11183 Manage 2 update urls? Deployment major ?
#11208 Review usage of local directory in editor, et al. General major ?
#11216 OMERO.py should be pip installable OmeroPy major ?
#11303 Add support for P250 Pannoramic MRXS data Bio-Formats major ?
#11329 Introduce "@Incubate" annotation API major ?
#11362 Bug: No permissions on getObjects("Dataset") Web wmoore major ?
#11374 Bug: Passing group -1 throws API usage exception. Security jamoore major ?
#11379 Add support for PerkinElmer Living Image data Bio-Formats mlinkert major ?
#11416 Add Javadoc links to ManagedRepository developer page. Documentation cblackburn major ?
#11447 Rework generated nginx config Deployment major ?
#11454 Remove cache script params Services major ?
#11467 Warn user of lossy permissions operations Client jburel major ?
#11477 Add "label" to Params API major ?
#11490 Thread-safe memory-block helper General java@… major ?
#11568 Add support for FreeSurfer MGH files Bio-Formats major ?
#11692 RFE: new Download Method API API major ?
#11706 BUG: Thumb - full viewer mismatch General major ?
#11740 OMERO Server simply stops ApplicationServer major ?
#11745 BUG: Delete button on Wind Web web-team@… major ?
#11860 Bug: FormatTools support for complex numbers Bio-Formats major ?
#11861 Bug: DeltaVision reader does not support complex pixel formats Bio-Formats major ?
#11872 bug: big image panning button release failure in web Web wmoore major ?
#11894 Review 256-char-limit on OMERO model text properties Model mtbcarroll major ?
#11929 bug: Erraneous tiles displayed when using image link to big image viewer Web wmoore major ?
#11988 Kymograph horizontal line Scripting wmoore major ?
#12021 Bug: logback timeout for import logs too long (30 min) Services cblackburn major ?
#12025 RFE: list import candidates from GUI Insight jburel major ?
#12057 Add support for FEI .ser data Bio-Formats major ?
#12088 BUG: TIFF export not including scale bar Insight jburel major ?
#12121 Model use of Boolean values instead of enumerations Specification rleigh major ?
#12143 Bug: users can make other users' data seem to vanish Insight jburel major ?
#12186 Bug: bin/omero db script hang Client major ?
#12199 Bug: Script List param defaults Web major ?
#12231 BUG: OMEROweb_request.log errors on nightshade Web web-team@… major ?
#12245 Add support for Incucyte data Bio-Formats major ?
#12297 Bug: Time zone Web atarkowska major ?
#12299 RFE: Delete double linked image warning Web atarkowska major ?
#12315 Bug: DropBox can't remove temporary files on Windows Client spli major ?
#12419 BUG: Quick change of selection web Web web-team@… major ?
#12432 Bug: "bin/omero load -k" doesn't exit to shell in certain cases Client major ?
#12438 BUG: Hang in import process - import part of .lei Insight jburel major ?
#12439 Bug: RepositoryInfo broken? API major ?
#12467 RFE: Server foregrounding option improvements Deployment major ?
#12483 Add support for MetaSystems .vsi data Bio-Formats major ?
#12545 Bug: DB model for ROI to Image does not match XML schema Model jamoore major ?
#12584 Add support for .oct files Bio-Formats major ?
#12664 BUG: Avatar error Web wmoore major ?
#12691 RFE: support LargeZips Web web-team@… major ?
#12706 Bug: SecurityViolation when removed from group Web wmoore major ?
#12730 Add support for Tissuegnostics data Bio-Formats major ?
#12731 Update L2DReader to support Li-Cor Odyssey data Bio-Formats major ?
#12763 Bug: 500 in web uncaught on user deactivation Web wmoore major ?
#12778 BUG: webclient/?show=image-XXX URLs don't work when the image is on the 2nd+ page of a dataset Web wmoore major ?
#12788 BUG: Import failure on trout-latest - Unable to handle target Insight jburel major ?
#12813 BUG: Thumbnail Figure empty Dataset Web wmoore major ?
#12830 Auto-truncate names in tree Web wmoore major ?
#12836 Read lookup tables from Imspector .msr files Bio-Formats major ?
#12841 Bug: Imspector channels detected incorrectly Bio-Formats major ?
#12872 RFE: Warning on deletion of Attachments Web wmoore major ?
#12873 Bug: plate Run move Web wmoore major ?
#12891 Bug: InternalException on admin search Services major ?
#12892 Bug: Handle CmdError on load_original_metadata Web wmoore major ?
#12899 Add support for Ventana .bif data Bio-Formats major ?
#12908 Scripts 'Password' parameter Scripting wmoore major ?
#12980 Bug: web Download zip > 2GB Web wmoore major ?
#12991 Public user should take priority on public pages Web atarkowska major ?
#12992 Download as JPEG Services major ?
#13010 BUG: Thumb is None Web wmoore major ?
#13015 Add support for EasyRatioPro format Bio-Formats major ?
#13030 Newly added omero prop cause SecurityViolation Services atarkowska major ?
#13043 BUG: Share and Projections Web wmoore major ?
#13047 RFE: Misformatting of table Web wmoore major ?
#13049 SaveArray without Validation Exception Services jamoore major ?
#13080 Bug: Cannot view data in system group Web wmoore major ?
#13084 BUG: OutOfMemoryError IMetadata.getTaggedObjectsCount() ApplicationServer jamoore major ?
#13086 BUG: Archived files multi-import Insight jburel major ?
#13087 BUG: Freezes at import of archived Insight jburel major ?
#13096 omero.web.apps should be unique Web atarkowska major ?
#13100 BUG: Web Rendering Settings - entered number not updating Web wmoore major ?
#13105 BUG: Loss of interaction with image after computer sleep Insight jburel major ?
#13117 Web should better handle request when omero server is unavailable Web atarkowska major ?
#13120 Add support for RayScan .rec data Bio-Formats dgault major ?
#13136 Add support for Berthold Nightshade data Bio-Formats major ?
#13138 BUG: NoObjectFactoryException omero::model::Rectangle Insight dlindner major ?
#13153 BUG: synchronous actions in Web Services major ?
#13159 Review permissions for graph operations from CLI Client cblackburn major ?
#13172 RFE: Guard agains duplicate tagnames Client major ?
#13191 ReadOnlyGroupSecurityViolation: Cannot link General major ?
#13198 ApiUsageException: Cannot find unique user DistinguishedName Services major ?
#13231 RFE: do not ignore image name on import Import jamoore major ?
#13235 Bug: Errors in Indexer log Services major ?
#13251 Bug: cleanse fails if there is a null ManagedRepository OmeroPy cblackburn major ?
#13252 Unexpected behavior of querieng MapAnnotations API jamoore major ?
#13253 Add support for new Leica LOF format Bio-Formats major ?
#13258 Bug: PNG image imports as blank Import major ?
#13264 BUG: Ordering in Shares Web wmoore major ?
#13270 Bug: images not matching with well placement Bio-Formats dgault major ?
#13278 ome.conditions.OptimisticLockException Services major ?
#13279 ome.conditions.TryAgain Services major ?
#13303 BUG: ResourceError on large batch uploads General dlindner major ?
#13328 Add support for Philips TIFF General dgault major ?
#196 Examine redefining the CodomainMapContext types and others as structs Model cxallan minor
#198 ShallowCopy should not use reflection. General jamoore minor
#206 Document stateful service problems Documentation jamoore minor
#216 Hide OmeroContext methods by splitting class and using BeanPostProcessor Configuration jamoore minor
#225 Gather all references to "root"/0L/"system"/"user" and internalize to SecuritySystem Security jamoore minor
#229 Test the use of the Hibernate query cache General jamoore minor
#317 Upgrade Spring DTD url Configuration jamoore minor
#335 ReadOnly methods still sometimes get a DB entry (Event) ORM jamoore minor
#338 Provide overview of which interfaces affect which DB tables General jamoore minor
#347 Implement IQuery.refresh(IObject) API jamoore minor
#349 Create and use subclasses of SecurityViolation from ACLEventListener Security jamoore minor
#359 DSL "required" property type could often be remodelled as one-to-one or many-to-one DSL jamoore minor
#377 Refactor `ome.services.query.Hierarchy` Queries jamoore minor
#378 Extend security tests. Security jamoore minor
#395 Implement performance regression tests Performance jamoore minor
#414 Document IAdmin-like usage of IUpdate.flush() API jamoore minor
#439 Put all enumerations in a single table ORM jamoore minor
#447 Examine time queries from non-Java languages. General jamoore minor
#478 Move pertinent annotations (@Stateless/@Stateful) to interfaces API jamoore minor
#512 Review hidden password solution. Security jamoore minor ?
#635 Overload operator<< on generated C++ classes if possible. Client jamoore minor
#669 Thumbnails won't generate on small images. General cxallan minor
#702 Try Hiberate 3.2.4.ga's order_insert option Performance jamoore minor
#711 blitz's IQuery.findAllByExample fails after #710 fix General jamoore minor
#722 Evaluate all HQL and Criteria queries for distinctness Queries jamoore minor
#737 ModelMapper improperly handles timestamps Services jamoore minor
#1006 Document and possibly implement helper method for reattaching to a serialized stateful server Documentation jamoore minor
#1026 Add PojoOptions to filter bad Images Services jamoore minor
#1043 Long-running Hibernate calls should be cancelled when client stops pinging in Ice Services jamoore minor
#1046 OMERO.registry needs to handle caching via proxies General jamoore minor
#1068 Review use of Spring internals General jamoore minor
#1153 Rework pojos.* packages, possibly using ObjectFactories API jamoore minor ?
#1202 Remove blank spaces with strip when validating the data General atarkowska minor
#1243 Image.reloadX et al. must check for a null details value Model jamoore minor
#1440 Decide if win32 API in python is a requirement on Windows General jamoore minor
#1465 Remove register-process from OmeroGrid configuration (Ice::Process) Deployment jamoore minor
#1489 Add RuntimeException subclass for wrapping omero.ServerError API jamoore minor
#1516 Add support for configuring OMERO_MASTER via config Deployment jamoore minor
#1529 Windows QUICKSTART failed to start with unusual message Deployment jamoore minor
#1531 Odd exceptions on shutdown in python General jamoore minor
#1609 find workaround for ${omero.name} in command-line Deployment jamoore minor
#1615 saveAndReturnIds should handle unknown objects API jamoore minor
#1619 Displaying thumbnails General minor
#1625 Tag sets contain tag sets General jamoore minor ?
#1627 Tag ontologies General jamoore minor
#1628 Tags: multiple user issues General jamoore minor
#1674 Losing connection during scanning forces user to repeat scan Insight jburel minor ?
#1803 Insight : Handle Protocol exceptions with "possible version mismatch error" Insight jburel minor
#2314 Activating trace for Processor-0 causes a hang Deployment minor ?
#2525 Migrate EventLogs from previous db upgrades General minor ?
#2539 Move sql/ directory contents to share/ General minor ?
#2584 On "Failed to startup" offer or run diagnostics General minor ?
#2671 Create superclass for omero.client in all languages API minor 2.5d
#2817 RFE: Add multi-field unique constraints to DSL DSL minor ?
#2892 Validator/bioformats should check XmlAnnotation blocks against XSD / DTD if available Specification rleigh minor ?
#2987 Add ConstrationViolation subclass of ValidationException General minor ?
#3243 Remove / refactor adminWorkflow.py Scripting wmoore minor ?
#3275 Prevent web settings.py from logging in on CLI usage General minor ?
#3425 Color picker Insight minor ?
#3436 Detecting ongoing import Insight minor ?
#3577 Create Template for SA General minor 0.5d
#3954 Handle datasets with large number of images Insight jburel minor ?
#3976 Extensions to "user data" landing page Web cxallan minor 1.5d
#4063 Cache HibernateUtils.getDetails Performance minor ?
#4090 Better usage of JAI Image I/O Tools Bio-Formats minor
#4091 Add support for compressed LIM files Bio-Formats minor ?
#4102 Add support for vector data in PS/EPS files Bio-Formats minor
#4103 Add enumeration for OME-XML versions Bio-Formats minor
#4105 More flexible window naming Bio-Formats crueden-x minor
#4106 Add support for MPEG-2/.vob files Bio-Formats minor
#4108 Vector .psd files not supported Bio-Formats minor
#4115 Add support for scanning microscopy formats Bio-Formats minor
#4152 LSM reader XT linescan opened as XY Bio-Formats minor
#4212 RFE: allow deleting of user scripts Services minor 0.25d
#4213 Add support for MetaFluor/OptoFluor data Bio-Formats minor 1d
#4527 RFE: store client passwords client-side (passwordless login) General minor ?
#4666 Derived columns must provide metadata to that effect General minor ?
#4703 Allow for browsing the selected project General jburel minor ?
#4857 RFE: Layout of Plate Insight jburel minor ?
#5252 RFE: Improved cancellation options Insight minor 0.25d
#5258 Add a file handle test that uses 'System Internals' Bio-Formats rleigh minor ?
#5267 RFE: Add new group WebAdmin WebAdmin wmoore minor ?
#5550 BUG: Thumbnail for very small images Services minor 0.1d
#5580 RFE: Open new dataset when clicking on name in import tab. Insight jburel minor ?
#5864 RFE: Image viewer split view - viewing 4 channels Insight jburel minor ?
#5873 openThumb* should return the stored thumbnail for FV1000 files Bio-Formats minor ?
#5886 LIM: allow deleting proj & dataset in insight Insight jburel minor ?
#5895 LIM: web history shows no data Web ux@… minor ?
#5932 Examine use of -XX:+UseCompressedOops General minor ?
#5960 Add cleanse to Delete tests Bin-Services minor ?
#5994 Provide JMX CLI tools. General minor ?
#6260 No right click in Project hierarchy view - Ubuntu Insight jburel minor ?
#6399 Restrict max sizex and sizey Services minor ?
#6413 Fix support for RGB Volocity clipping files Bio-Formats minor ?
#6441 Right hand panel refresh button Web wmoore minor ?
#6461 Alt. strategy for relative paths on Windows Deployment jamoore minor ?
#6469 Delete Plate, keep images Insight jburel minor ?
#6861 RFE: Remove Avatar Image Web atarkowska minor ?
#6942 RFE: Landing page support 'shared' images Web wmoore minor ?
#6957 Provide passwordless login on server system Deployment minor ?
#6965 UpgradeChecks are slow General jamoore minor ?
#7080 Feedback/Error Pop-up window message improvement Web wmoore minor ?
#7197 Bug: Java heap space management Insight jburel minor ?
#7267 Evaluate ivy classifiers for insight build General jamoore minor ?
#7701 Add support for Bruker Optics data Bio-Formats minor ?
#7973 RFE: Allow movie script to show ROI'S General jburel minor ?
#8092 BUG:Error display Insight jburel minor ?
#8126 RFE: Allow writing of AVI 2.0 files Bio-Formats minor ?
#8215 Set up some way of mapping plane indices to file names Bio-Formats minor ?
#8247 RFE: Reset of point to point Insight jburel minor ?
#8366 Create new "Image+Filename view" Web wmoore minor ?
#8759 RFE: Delete vv Remove annotations Web jburel minor ?
#8820 Bug: out of synch Insight jburel minor ?
#8875 Add some missing Metamorph screen metadata Bio-Formats mlinkert minor ?
#9072 RFE: Scrolling bug viewing image information in image viewer Insight jburel minor ?
#9073 Bug: Right-hand information panel stuck to right hand edge of window, and is not expandable General jburel minor ?
#9079 Bug: Glacier2 cannot be caught in OmeroPy General jburel minor ?
#9109 RFE: support temp_ids in PostgreSQL ORM minor ?
#9167 RFE: shapes not taken into account in RoiOptions General minor ?
#9198 RFE: Facility to tag wells in Screen Insight jburel minor ?
#9207 Bug: Admin cannot move to new group immediately after creating the group Insight jburel minor ?
#9224 Bug: Browse from "Located in" Insight jburel minor ?
#9228 Investigate performance of TIFF-based readers Bio-Formats mlinkert minor ?
#9231 RFE: prevent change of groups while user working Security jamoore minor ?
#9238 Bug: Insight application cosmetic issues Insight jburel minor ?
#9255 RFE: Admin Insight/Web difference Insight jburel minor ?
#9256 RFE: Group name refresh Insight jburel minor ?
#9260 Bug: Newly added user not showing Insight jburel minor ?
#9264 Bug:Zoom in and out on 2048x2048 image Insight jburel minor ?
#9276 BUG:attached XML from QA jburel minor ?
#9288 RFE: remove _createConnection from weblitz.views General cneves minor ?
#9289 RFE: remove try_super from omero.gateway connect General cneves minor ?
#9315 RFE: OMERO database setup is two steps when it could be one Deployment minor ?
#9333 RFE: /tmp directory deleted General jamoore minor ?
#9336 Some DICOM files do not read all planes Bio-Formats mlinkert minor ?
#9360 BUG:Image Scroll reset on zooming from QA jburel minor ?
#9503 Remember Thumb zoom Insight jburel minor ?
#9516 RFE: add support for SICM data Bio-Formats minor ?
#9517 Bug: Open-with... multi images Insight jburel minor ?
#9593 DOC: ome.plateview.js Documentation minor ?
#9604 Bug: switch user ij Insight jburel minor ?
#9615 Bug: Field view thumbnail zooming broken in plate view Insight jburel minor ?
#9619 Keep all acquisition categories expanded when switching between Images Insight jburel minor ?
#9657 Bug: Move to Group - refresh Insight jburel minor ?
#9694 RFE: log some err when manage.py already running Web web-team@… minor ?
#9735 BUG:Error handling data repo installation/upgrade from QA jburel minor ?
#9764 RFE: Error handling from QA jburel minor ?
#9776 RFE: Table view/List view Insight and Web Web web-team@… minor ?
#9797 BUG: Scale bar tool main menu Insight Insight jburel minor ?
#9815 BUG: Tags added at import invisible in thumbnails Insight jburel minor ?
#9828 RFE:QA4709 handle "No space left on device" from QA jburel minor ?
#9842 BUG: Right pane not activating Insight jburel minor ?
#9874 RFE: Import Time using locale Insight jburel minor ?
#9889 RFE: Group creation Web and Insight Web web-team@… minor ?
#9891 BUG:OO memory reading file from QA jburel minor ?
#9894 RFE: New user/group creation in web Web web-team@… minor ?
#9898 RFE: Edit user in Web and Insight Web web-team@… minor ?
#9910 Turn remaining uses of ReflectedUniverse into services Bio-Formats minor ?
#9920 RFE: plugin text Insight jburel minor ?
#9923 BUG: link from Importer to Dataset not working in Insight Insight jburel minor ?
#9932 Add support for OASIS slide datasets Bio-Formats minor ?
#9978 BUG:Remove group from QA jburel minor ?
#9998 Bug: Insight filter does not update even with refresh Insight jburel minor ?
#10009 Bug: MT and tables update after save. Insight jburel minor ?
#10025 Add support for MetaIO files Bio-Formats minor ?
#10028 BUG:Lens and movie from QA jburel minor ?
#10032 CLI: Simplified start/stop via bin/omero admin Client minor ?
#10056 RFE: clear list activities Web wmoore minor ?
#10065 RFE: Number of items display Web wmoore minor ?
#10072 RFE: Provide feedback during large uploads-QA4797 from QA jburel minor ?
#10080 Update Insight to handle array columns Insight jburel minor ?
#10087 Refactor sf.executor to handle exceptions Services minor ?
#10167 Bug: Importer does not refresh thumbnails if /OMERO/Thumbnails changes Import jburel minor ?
#10169 RFE: Extend Channel Name change Insight jburel minor ?
#10172 Bug: Data browser lags behind metadata change Insight jburel minor ?
#10182 Reduce log output for Indexer General jamoore minor ?
#10186 Sort user and group admin lists by default Web web-team@… minor ?
#10198 Bug: lastModification timestamp is ignored by OMERO.tables update() API spli minor ?
#10246 RFE: Sort tag lists by count Insight jburel minor ?
#10253 RFE: Import files in a logical order Import minor ?
#10257 Bug: insight looks for icy in client dir Insight jburel minor ?
#10258 RFE: Indicate progress edit channel Insight jburel minor ?
#10265 RFE: Projection image description Insight jburel minor ?
#10271 FindBugsTask cannot be found General jamoore minor ?
#10276 Review files older than 2 years General jamoore minor ?
#10288 Address literal non-ASCII characters in source code General minor ?
#10293 RFE: on logout set login params, or have switch user Web wmoore minor ?
#10313 Bug: clash between users semi-disables Insight Insight jburel minor ?
#10314 Bug: Insight toolbar inactive in some situations Insight jburel minor ?
#10328 Bug: ROIs drawn Insight shown to be in wrong place by web client image viewer Insight jburel minor ?
#10330 Enable deletion of (hanging/zombie) ScriptJobs Scripting minor ?
#10332 Bug: Insight drag and drop doesn't move images between groups Insight jburel minor ?
#10357 Color Mapping strategy from QA jburel minor ?
#10362 OMERO.scripts should call enableKeepAlive() before running a script Scripting spli minor 1d
#10396 Dragging of images in web fails after the mouse pointer leaves the image Web wmoore minor ?
#10408 Bug: search for Experimenter using byFullText("root") does not return any results Search minor ?
#10414 Consider changing file path representation in API OmeroFs jamoore minor ?
#10418 Consider adding FloatColumn OMERO.tables column type API spli minor ?
#10428 Turn down logging verbosity in OMERO.tables Services spli minor ?
#10452 RFE: different CLI help goes to different file descriptors Import jamoore minor ?
#10454 Bug: in web right-click menus can be vertically truncated Web wmoore minor ?
#10455 RFE: poor layout of right pane in web client Web wmoore minor ?
#10484 Bug: Group display selector hard to awaken Insight jburel minor ?
#10504 Add support for Aperio XML ROI file Bio-Formats mlinkert minor ?
#10528 Bug: Incorrect header size in ROI propagation dialogue Insight jburel minor ?
#10534 Bug: Jiggling metadata scrollbars Insight jburel minor ?
#10540 Bug: ROI tool line profile and histogram defects Insight jburel minor ?
#10541 Bug: Insight ROI intensity view excel export defects Insight jburel minor ?
#10552 Bug: Can't view large images in Insight, out of memory Insight jburel minor ?
#10553 RFE: display if user is an admin Insight jburel minor ?
#10565 Review server for RawFileStore leakage General jamoore minor ?
#10584 Bug: testStartAsync failing (disabling) General jamoore minor ?
#10605 Force debug=True for OMERO.web while in development mode Web web-team@… minor ?
#10612 Export: prevent overwriting of existing files Bio-Formats minor ?
#10616 Bug: black text on black backgound Web wmoore minor ?
#10660 BUG: Big images rendering - red square Insight jburel minor ?
#10670 Improve exception handling when thumbnail size is too small Services minor ?
#10672 Big image import failure on howe Import minor ?
#10679 BUG: History calendar Web Web wmoore minor ?
#10691 Adjust code generator so that enumeration values appear in ome.model.* Model minor ?
#10692 Review checksum comparisons OmeroFs jamoore minor ?
#10693 Refactor OriginalFile for repositories and directories OmeroFs jamoore minor ?
#10704 Stacktrace emdb OMERO web Web wmoore minor ?
#10715 BUG: ROIs - Insight-Web - different appearance and IDs Insight jburel minor ?
#10731 Bug: Display of long other XML annotation Insight jburel minor ?
#10744 RFE: raw file store empty file semantics Services minor ?
#10754 Validation checksums for file downloads OmeroFs jamoore minor ?
#10763 Bug: Creation of zipfile/ome-tiff attachments by file export Web web-team@… minor ?
#10768 RFE: File chooser during downgrade Insight jburel minor ?
#10787 Bug: orphaned wells on gretzky Insight jburel minor ?
#10792 Performance numbers for FS lite General minor ?
#10808 Convenience methods/test for Repository API API minor ?
#10809 FS delete finalization General minor ?
#10812 FS perf. optimizations to consider Performance minor ?
#10814 RFE: Export - downgrade file filter Insight jburel minor ?
#10815 NetworkChecker & HTTP_PROXY General minor ?
#10818 Bug: Graphical layout issues with java7/windows8 Insight jburel minor ?
#10835 RFE: chdir on insight launch from CLI Insight jburel minor ?
#10906 RFE: IQuery should respect Parameters.exp() Services minor ?
#10919 Detect omero.fslite.path_rules breaking changes OmeroFs mtbcarroll minor ?
#10922 Bug: Size of tag/comment/text annotations is unlimited API minor ?
#10924 RFE: deprecation warnings General minor ?
#10930 Arrange Lucene index better for multiply hashed files Search minor ?
#10974 RFE: BlitzGateway.getObjects(???, []) returns an unhelpful error API wmoore minor ?
#10976 BUG: Browse Projects Insight jburel minor ?
#10986 ome.conditions.InternalException: No permissions: from QA atarkowska minor ?
#11038 RFE: heavy Ctrl-C on CLI chgrp should properly cancel Client minor ?
#11049 Bug: Insight refresh on administration change Insight jburel minor ?
#11055 CLI configuration option prompt spacing is poor Client jamoore minor ?
#11066 RFE: package Makefile as Makefile.example in OMERO.cpp.zip OmeroCpp minor ?
#11073 Bug: Insight crash while working on batch export Insight jburel minor ?
#11080 BUG:Browsing wrong state from QA jburel minor ?
#11091 Refactor hierarchy-walking in latest Blitz FS code OmeroFs mtbcarroll minor ?
#11103 Doc: Add page for methods to avoid (clone(), etc.) Documentation jamoore minor ?
#11105 RFE: improve thread executor configuration Services minor ?
#11155 BUG:Improve Checksum error handling from QA jburel minor ?
#11163 RFE: Exporting Intensity Values to Excel - Single Channel Insight jburel minor ?
#11165 RFE: Plot profile script Insight jburel minor ?
#11179 BUG: 'NoneType' object has no attribute 'read' from QA spli minor ?
#11180 RFE: Split channel view should (arguably) default to showing all channels instead of the first three Web ux@… minor ?
#11277 Abnormal termination due to an uncaught exception. from QA jburel minor ?
#11283 Bug: Login dialogue is broken (repeat regression) Insight jburel minor ?
#11295 Disable Attach button if a directory is selected after previously selecting a file Insight jburel minor ?
#11304 Bug: omero admin diagnostics fails early Deployment minor ?
#11308 RFE: more strongly cause QA submitters to identify themselves QA jburel minor ?
#11310 Review literal references to SHA1 in OMERO 5 OmeroFs jamoore minor ?
#11311 BUG: Measurement tool - ROI - Window disappears behind viewer Insight jburel minor ?
#11316 RFE: Create users from QA jburel minor ?
#11318 EMBL-Heidelberg Format Bio-Formats minor ?
#11327 RFE: awkward editing of metadata text fields Insight jburel minor ?
#11347 Bug: Extend timestamp precision to nanoseconds Bio-Formats rleigh minor ?
#11375 Bug: permissions test throws wrong exception Security jamoore minor ?
#11377 RFE: Insight doesn't always expand user's tree node Insight jburel minor ?
#11393 BUG:Refresh browser Insight jburel minor ?
#11415 RFE: test client display of wells from run-less plates, consider other kinds of data Client jburel minor ?
#11437 Write script for getting tiles pre-cached Scripting minor ?
#11443 RFE: Auto-scroll to project/dataset/image when linked in a web url Web web-team@… minor ?
#11469 RFE: consider comments on AdminImpl Services jamoore minor ?
#11486 RFE: viewing orphaned samples in Insight Insight jburel minor ?
#11526 QA7654 - should feedback be opened from scripts? from QA atarkowska minor ?
#11528 Document SQL version history Documentation jamoore minor ?
#11536 RFE: 'Run' in image hierarchy Web wmoore minor ?
#11560 Bug: Incorrect pixel offsets for some .spl files Bio-Formats minor ?
#11561 Python servers hang at startup when Ice.Trace is enabled OmeroPy spli minor ?
#11580 BUG: OMERO.web has duplicate upgrade available messages Web web-team@… minor ?
#11585 Bug: "Almost complete" throughout 1Gb upload Insight jburel minor ?
#11616 Permission denied: /tmp/sessionida8f6f1fa35675dfb from QA atarkowska minor ?
#11623 Bug: Insight copes poorly with wells that have no samples Insight jburel minor ?
#11636 API for file path sanitization OmeroFs mtbcarroll minor ?
#11650 Bug: Please link to newly-created QA tickets QA atarkowska minor ?
#11666 Add support for EVOS data Bio-Formats minor ?
#11670 RFE: omero config get should return default values Configuration minor ?
#11678 RFE: Shortcode markup for linking images in web Web web-team@… minor ?
#11684 RFE: clarity about INI format Import jamoore minor ?
#11685 Use common best-of-all INI parser General mtbcarroll minor ?
#11696 BUG: Multiple server list entries on same host with different ports aren't allowed Insight jburel minor ?
#11712 RFE: keep RobotFramework Screenshots General jburel minor ?
#11721 Bug: OmeroMetadataStore support for Modulo Z annotations Insight jburel minor ?
#11734 RFE: View on Windows EOL problem Insight jburel minor ?
#11738 Silence JDBCExceptionReporter ERRORs on bad queries General minor ?
#11741 Provide remote access to script mimetypes ApplicationServer minor ?
#11744 RFE: New Project when Projection Insight jburel minor ?
#11755 RFE: OMERO.Insight - First Run ask Server Name General jburel minor ?
#11756 BUG: Batch image export fails if the total exported size is too large General minor ?
#11778 BUG:NPE loading available reader from QA jburel minor ?
#11780 RFE: Comprehensive, automated model object graph analysis Services mtbcarroll minor ?
#11791 Use cleanse to remove minimal original_metadata.txt files General minor ?
#11794 Bug: Insight configuration rejects distinct configs Insight jburel minor ?
#11811 Bug: hang on disconnecting VPN Insight jburel minor ?
#11816 Bug: Viewer split view resets viewport position on pointer exit Insight jburel minor ?
#11829 Bug: Insight debugging in Eclipse throws exception Insight jburel minor ?
#11831 Attempt to improve metadata exported from ImageJ Bio-Formats minor ?
#11843 RFE: 3D ROI distance script Scripting minor ?
#11846 BUG:Error handling permissions from QA jburel minor ?
#11862 Bug: OME-TIFF support for reading and writing complex pixel types Bio-Formats minor ?
#11868 BUG:Check for missing icon from QA jburel minor ?
#11897 __hash__ implementation for BlitzGateway objects General drussell-x minor ?
#11904 Stack overflow Browser from QA jburel minor ?
#11919 Integration test for QA feedback QA jburel minor ?
#11923 MemoryLimitException after strees test from QA atarkowska minor ?
#11935 RFE: Position of web refresh button is inconsistent Web ux@… minor ?
#11942 Bug: need a couple of tries to expand users in tree view Insight jburel minor ?
#11959 Bug: IE9 bird's eye view drag Web wmoore minor ?
#11967 RFE: ImageJ plugin interface does not expose reader-specific export options Bio-Formats bramalingam minor ?
#11991 BUG: duplicate zips created on download from QA jburel minor ?
#12005 RFE: No importer-cli.bat script for Windows Import jburel minor ?
#12015 BUG: Paging in the OMERO.web history view doesn't work properly Web web-team@… minor ?
#12016 Bug: Windows clients error log Client jburel minor ?
#12018 Bug: Big image scroll box size incorrect upon initial viewing Insight jburel minor ?
#12022 RFE: click view immediately after import of bigimage in Insight, "The image is not a valid image" Insight jburel minor ?
#12040 Improve error message when a script can't be run Scripting minor ?
#12043 RFE: make fileset entry client path look nicer Import jamoore minor ?
#12052 Bug: move user between groups in Insight leaves Project tree stale Insight jburel minor ?
#12053 Bug: web: remove user's last group leaves field empty WebAdmin wmoore minor ?
#12059 C++ Image rescaling/resampling Bio-Formats rleigh minor ?
#12081 Bug: C++ PixelBuffer needs a companion proxy pixel buffer Bio-Formats rleigh minor ?
#12089 RFE : Fiji/ImageJ - batch file handling General bramalingam minor ?
#12122 RFE: query service handling of bytea DB columns Services jamoore minor ?
#12180 RFE: more robustness in using non-standard Java classes General minor ?
#12207 Bug: render_response and render_response_admin fail if given an HttpResponse Web web-team@… minor ?
#12215 Bug: can't see file paths popup under Linux Insight jburel minor ?
#12224 BUG: put group off display & import Insight jburel minor ?
#12234 Bug: Import directory with no images fails Insight jburel minor ?
#12237 Bug: LIFReader: Original metadata regression from 4.4 Bio-Formats jburel minor ?
#12240 Birdeyeview bug on IE Web web-team@… minor ?
#12243 RFE: increase pagination options for CLI commands Services jamoore minor ?
#12246 Bug: Dialogue boxes always appear on primary display Insight jburel minor ?
#12260 RFE: database script upgrade schema comparison Model jamoore minor ?
#12265 RFE: reduce number of directories for uploaded files QA atarkowska minor ?
#12275 Check filesystem sanitization of template paths Import jamoore minor ?
#12277 RFE: Add ImageJ logo to Insight running as ImageJ plugin Insight jburel minor ?
#12292 RFE: reserved column names ORM jamoore minor ?
#12312 Bug: password reset assumes root user ID of 0 General minor ?
#12334 RFE: Windows Service bin/omero admin diagostics and OMERO_TEMPDIR Deployment jamoore minor ?
#12345 LockTimeout on loading metadata from QA atarkowska minor ?
#12364 BUG:File on tape from QA jburel minor ?
#12382 Bug: SecurityViolation - updating thumbnail not allowed Web wmoore minor ?
#12385 Unnecessary thread safety from Vector? Bio-Formats mtbcarroll minor ?
#12387 BUG:Figure generation PDF Search wmoore minor ?
#12400 Bug: xsd-fu is using an ancient version of generateDS General minor ?
#12401 BUG: First-time LDAP login not working in Insight from QA jburel minor ?
#12404 Bug: insight "cannot cancel script" error Insight jburel minor ?
#12418 RFE: nicer error from Insight for out of space when saving files Insight jburel minor ?
#12427 RFE: Clarify compression setting. Insight jburel minor ?
#12428 RFE: make script help hyperlinks actually live Web web-team@… minor ?
#12431 RFE: set umask in omero web config Web web-team@… minor ?
#12442 Bug: hql size function syntax error General minor ?
#12464 Bug: server start-up confusing if repository bean creation fails Services jamoore minor ?
#12473 Channel should model separate probe/fluor metadata attributes Specification rleigh minor ?
#12515 BUG: Prev/next page links do not adapt to filtered results Web web-team@… minor ?
#12535 Bug: Unsupported conversion to rtype from QA atarkowska minor ?
#12540 Bug: curious group owner creation behavior Insight jburel minor ?
#12541 ICE_CONFIG environment variable is ignored by omero shell OmeroPy minor ?
#12542 RFE: distinguish system / owner users in tree view Insight jburel minor ?
#12573 BUG: QA 9547 - handle timed out session from QA jburel minor ?
#12580 Bug: projected images share objective settings General minor ?
#12586 Bug: Insight context menu enabling for new containers Insight jburel minor ?
#12593 Bug: Insight projects browser icons not updating with thumbnails changes Insight jburel minor ?
#12594 RFE: Allow multi-paste of image link Insight jburel minor ?
#12595 Bug: Very confusing multi-selection in project browser Insight jburel minor ?
#12599 Bug: OMERO clients report BIT pixel type as uint8 Bio-Formats minor ?
#12621 BUG: BlitzGateway,getSession() fails if initialised using client_obj API minor ?
#12655 BUG:TableLayout ArrayIndexOutOfBoundsException Insight dlindner minor ?
#12660 RFE: Alpha-blended overlay of binary segmentation on images Client minor ?
#12674 Bug: absurd Insight import time Insight jburel minor ?
#12678 Allow bfconvert file patterns to use configurable number of digits Bio-Formats minor ?
#12682 Bug: DatabaseBusyException Insight jburel minor ?
#12689 Bug: tree/metadata sync with runs and wells Insight jburel minor ?
#12710 BUG: Search raised and error Feedback 10437 from QA atarkowska minor ?
#12720 RFE: Tab Completion on users for group membership in web admin Web wmoore minor ?
#12721 RFE: Improve graphs error reporting in Web Web wmoore minor ?
#12740 Bug: Miscellaneous OMETiffReader defects Bio-Formats minor ?
#12749 Bug: move button becomes inconsistently deselected Insight jburel minor ?
#12764 Bug: save rename change Insight jburel minor ?
#12767 Bug: OSX Crash Dialogue on saveout from ROI edit Insight jburel minor ?
#12768 Bug: OSX Crash Dialogue on saveout from ROI edit Insight jburel minor ?
#12780 BUG: Insight Import View in Data Browser doesn't work Import minor ?
#12812 BUG: Windows servicename length is very limited on W2012-R2 General minor ?
#12815 Bug: kymograph script can't attach Scripting wmoore minor ?
#12838 BUG:JDK bug in GTKFileChooserUI Insight dlindner minor ?
#12844 BUG:NPE Importer from QA dlindner minor ?
#12845 RFE: file type Metamorph Import jburel minor ?
#12851 BUG:OmeroDataService, MemoryLimitException Insight dlindner minor ?
#12863 BUG: Insight delete stale comments, ratings, MAnn Insight jburel minor ?
#12882 RFE: more information about login failures Insight jburel minor ?
#12897 RFE: parse metadata from U. Fribourg 2-photon data Bio-Formats minor ?
#12898 Extend Bio-Formats Macro Extensions to extract Channel name,etc. Bio-Formats minor ?
#12907 Bug: C++ cmake option consistency Bio-Formats rleigh minor ?
#12909 BUG:Feedback 11099 - SocketException Insight jburel minor ?
#12914 Bug: negative script parameters Web wmoore minor ?
#12915 RFE: Clearer indication of script failure Insight jburel minor ?
#12916 RFE - getting map annotations using Matlab toolkit General bramalingam minor ?
#12917 RFE: Display Group ID in clients Insight jburel minor ?
#12922 Bug: PG ERROR printed on invalid UTF-8 ORM minor ?
#12923 RFE: Improve handling of "User 452 is not a member of group 106" security violation from server Web wmoore minor ?
#12937 RFE: avoid needless group click on move Web wmoore minor ?
#12938 Text image file support Bio-Formats minor ?
#12945 RFE: show error message after failed chmod Insight jburel minor ?
#12946 RFE: clarify downgrade-to-private workflow Insight jburel minor ?
#12947 Insight cache defult group from QA jburel minor ?
#12955 BUG:Measurementtool problems with sdt file from QA dlindner minor ?
#12956 BUG:Failing LDAP request crashed Insight from QA dlindner minor ?
#12961 RFE: Allow user to change mind when choosing group (change group, web) Web wmoore minor ?
#12979 RFE: improve error message for CLI export onto existing file OmeroPy cblackburn minor ?
#13001 Bug: new tag set gets grayed out Insight jburel minor ?
#13004 RFE : Optimise performance for reading tiles in big Images Bio-Formats minor ?
#13006 RFE: better error detail on save failure Insight jburel minor ?
#13008 Bug: missing intensity results data? Insight jburel minor ?
#13011 Webgateway cache missing quality Web atarkowska minor ?
#13014 Bug: Memory Management issues in OMERO-IJ Plugin for Big Images Insight jburel minor ?
#13027 Bug: Windows user at UCL triggered AWT exception Insight jburel minor ?
#13028 Bug: Email bounce / address problems should not be a server error WebAdmin atarkowska minor ?
#13041 RFE: CLI can have trouble introspecting into abstract types Client cblackburn minor ?
#13053 Bug: Password Reset is not an Error Web atarkowska minor ?
#13056 BUG: RFE Browsing through planes Insight dlindner minor ?
#13060 Cannot find unique user DistinguishedName Services atarkowska minor ?
#13064 RFE: New Reader for Picoquant HydraHarp (.pt3) Bio-Formats minor ?
#13071 BUG: Remove user from last group Insight dlindner minor ?
#13072 RFE: Selection of General pane Web wmoore minor ?
#13077 Images not linked directly to Instruments Model jburel minor ?
#13093 Bug: Polygon switch tool Insight jburel minor ?
#13098 BUG: JPEG Reader (Could not determine subsample type) Bio-Formats minor ?
#13101 BUG: SecurityViolation: 2 methods active Insight dlindner minor ?
#13102 BUG: Insight Dock icon lost Insight jburel minor ?
#13106 TiffReader: Does not handle YCbCr conversion Bio-Formats minor ?
#13110 BUG: NoClassDefFoundError PieDataset Insight dlindner minor ?
#13116 BUG: OptimisticLockException on import Insight dlindner minor ?
#13118 Bug: QA16933 - error handling on server down Web atarkowska minor ?
#13121 BUG: cannot delete Shape Insight bramalingam minor ?
#13123 Andor/FluoviewReader - Incorrect unit conversion Bio-Formats dgault minor ?
#13144 Bug: Minimal Tiff Reader - Index out of bounds exception Bio-Formats minor ?
#13152 Bug: Image looks different between BF and OMERO Import jburel minor ?
#13155 BUG: No lock found Insight dlindner minor ?
#13163 BUG: Paste rendering settings Insight dlindner minor ?
#13166 RFE: allow creation of ROIs from CLI ROIs jamoore minor ?
#13168 BUG: Bioformats Exporter not opening Mac OSX Java 8 Bio-Formats bramalingam minor ?
#13170 CellSensReader - Image banding and bad pixel data Bio-Formats dgault minor ?
#13174 APLReader - parsing of mtb file Bio-Formats dgault minor ?
#13178 BUG: Unsupported Compression Type 1145656920 for AVIReader Bio-Formats minor ?
#13184 RFE: replace deprecated Hibernate annotations ORM jamoore minor ?
#13185 RFE: option to Group/Ungroup files at the Import stage in Insight Insight jburel minor ?
#13188 Bug: Additional tiling defects Bio-Formats minor ?
#13189 BUG: NPE in Importer UI Insight dlindner minor ?
#13190 BUG: Image thumbnail selection, crash Insight dlindner minor ?
#13203 ZeissCZIReader - Unknown IlluminationType Bio-Formats dgault minor ?
#13204 BUG: ND2 files with wrong series and time points Bio-Formats minor ?
#13208 BUG: Java Gateway, sudo connections fail Insight dlindner minor ?
#13211 Channel offsets surprise Scripting wmoore minor ?
#13213 BUG: NPE getSelectedGroup Insight dlindner minor ?
#13215 BUG: Network down exceptions Insight dlindner minor ?
#13216 BUG: ConstraintViolationException; image annotation Insight dlindner minor ?
#13219 Bug: Web rendering settings fails with this artificial image Web wmoore minor ?
#13222 ImageJ Plugin - Image crop not working with Virtual stack Bio-Formats dgault minor ?
#13227 Strange SVG geometry in Insight Insight jburel minor ?
#13228 Bug: "No Image" thumb rendered at aspect of underlying image Web wmoore minor ?
#13234 Bug: duplicate key value violates unique constraint "experimenter_omename_key" General jamoore minor ?
#13236 Bug: stack trace in converting to PNG Bio-Formats dgault minor ?
#13240 BUG: Import dialog: New Dataset orphaned Insight dlindner minor ?
#13244 ImspectorPro files only open a single frame Bio-Formats dgault minor ?
#13245 BUG: Misleading error message for OOM Insight dlindner minor ?
#13249 BUG: Requested object ID: null Insight dlindner minor ?
#13259 OMERO.insight-ij plugin - charToByteConverterClass warning Bio-Formats dgault minor ?
#13260 Bug: omero ldap create hung ApplicationServer minor ?
#13262 RFE: nd2 files with strange characters in metadata Bio-Formats dgault minor ?
#13263 BUG: SocketException, too many open files Insight dlindner minor ?
#13265 ValidationException when inserting Pixels object Bio-Formats dgault minor ?
#13268 Bug: "Apply" button seems to ignore port change for server Insight dlindner minor ?
#13271 Olympus ScanR fails to import Bio-Formats dgault minor ?
#13274 RFE: Unsupported Fortmat (.ovl) Bio-Formats bramalingam minor ?
#13276 Clean up guest connections from web Web atarkowska minor ?
#13283 RFE:: Improve cmd line listusers output Usability ux@… minor ?
#13287 BUG: CellSensReader (Image dimensions) Bio-Formats minor ?
#13288 Strange JPEG/OME-TIFF minmax behavior with import Import jburel minor ?
#13289 RFE: review tiffcomment upgrade check warning Bio-Formats dgault minor ?
#13292 Bug: Insight not showing pixel data Insight jburel minor ?
#13293 BUG: NPE image viewer Insight dlindner minor ?
#13294 BUG: NPE delete user Insight dlindner minor ?
#13296 BUG: Bio-Formats Exporter issues while splitting Z,T Bio-Formats dgault minor ?
#13298 Bug: wrong plate images shortly after import Import jamoore minor ?
#13300 RFE: Support for New Format (MSD) Bio-Formats minor ?
#13302 BUG: NPE in LocationDialog Insight dlindner minor ?
#13304 BUG: NPE in ImgSaver Insight dlindner minor ?
#13306 RFE: Populate slice labels of ImagePlus Object Bio-Formats bramalingam minor ?
#13307 BUG: Map annotation saving workflow Insight jburel minor ?
#13308 BUG: NPE JComponent.repaint Insight dlindner minor ?
#13310 RFE: CLI user-choosing option sometimes ignored OmeroPy jamoore minor ?
#13311 BUG: NoSuchMethodError ROIFacility Insight dlindner minor ?
#13312 BUG: Can't delete tmp file, ArchivedImageLoader Insight dlindner minor ?
#13315 BUG:Feedback 17450: LDAP exception on root login from QA jamoore minor ?
#13318 BUG: ImarisHDFReader -new version of files not being read by BF Bio-Formats minor ?
#13322 Bug: ND2 Bfconvert issues Bio-Formats minor ?
#13329 Bug: DB deadlock in applySettingsToSet Services minor ?
#105 Update OMEData queries in test_data.properties and document usage. Deployment jamoore trivial
#262 Consider more service component interfaces for handler logic. Security jamoore trivial
#292 Use generated constant field names in criteria queries Queries jamoore trivial
#383 Remove all System.out|err references General jamoore trivial
#468 Roles should also take into account security annotations Security jamoore trivial
#559 Improve logging of DB modifications. General jamoore trivial
#6311 Add tooltips to the OME-XML window in ImageJ Bio-Formats trivial ?
#6375 Add basic support for PDF files Bio-Formats trivial 1d
#10340 Add support for VTK files Bio-Formats trivial ?
#10368 RFE: Use nice terminal bars for CLI upload General trivial ?
#13212 RFE: thumbnail context menu Web wmoore trivial ?
#13242 Bug: Insight create user UI requires a group allocated, but UI doesn't show it as required Insight jburel trivial ?
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