{54} Reader Report (211 matches)

api (4 matches)

Ticket Milestone Priority Summary Keywords
#4190 Pyramids major Add reader wrapper that provides simpler tile access api
#4155 Unscheduled major Expand (and clean up) use of new 'setWriteSequentially' method api, export
#4157 Unscheduled major Make it easier to get/set the pixels' compression type api, codec, export, external
#12181 Unscheduled major Bio-Formats API improvements api

api (1 match)

Ticket Milestone Priority Summary Keywords
#8215 Unscheduled minor Set up some way of mapping plane indices to file names model, api

APNGWriter (1 match)

Ticket Milestone Priority Summary Keywords
#4129 Unscheduled major APNG writer does not support saving tiles export, APNGWriter

AVIReader (2 matches)

Ticket Milestone Priority Summary Keywords
#13178 Unscheduled minor BUG: Unsupported Compression Type 1145656920 for AVIReader codec, AVIReader, external
#4092 Unscheduled trivial AVI codecs supported by NIS Elements codec, AVIReader

AVIWriter (2 matches)

Ticket Milestone Priority Summary Keywords
#4128 Unscheduled major AVI writer does not support saving tiles export, AVIWriter
#8126 Unscheduled minor RFE: Allow writing of AVI 2.0 files export, AVIWriter

CellomicsReader (1 match)

Ticket Milestone Priority Summary Keywords
#7092 Unscheduled major Improve metadata support for Cellomics datasets CellomicsReader, external

codec (11 matches)

Ticket Milestone Priority Summary Keywords
#6229 Pyramids major Bio-Formats JAI ImageIO service examination codec, jpeg2000
#4117 Unscheduled major Support for Group 3 Fax TIFF compression codec, TiffReader, external, new-feature
#4165 Unscheduled major Consider writing decoder for compressed Flex files codec, FlexReader
#11612 Unscheduled major Make codecs discoverable codec
#4090 Unscheduled minor Better usage of JAI Image I/O Tools codec, TiffReader
#4091 Unscheduled minor Add support for compressed LIM files codec, LIMReader
#7781 Unscheduled minor Support for Group 4 fax compression codec, TiffReader
#13178 Unscheduled minor BUG: Unsupported Compression Type 1145656920 for AVIReader codec, AVIReader, external
#4082 Unscheduled trivial Support for QuickTime Sorenson 3 codec codec, NativeQTReader
#4092 Unscheduled trivial AVI codecs supported by NIS Elements codec, AVIReader
#11765 Unscheduled trivial Add LZ4 service codec

codec (5 matches)

Ticket Milestone Priority Summary Keywords
#4157 Unscheduled major Make it easier to get/set the pixels' compression type api, codec, export, external
#4177 Unscheduled major Certain JPEG-2000 files are not read correctly JPEG2000Reader, codec, external
#4106 Unscheduled minor Add support for MPEG-2/.vob files new-format, codec
#9037 Unscheduled minor Add support for QuickTime H.264 NativeQTReader, external, codec
#4148 Unscheduled trivial Native support for Quicktime Sorenson 1 codec (SVQ1) NativeQTReader, codec, external

DicomReader (1 match)

Ticket Milestone Priority Summary Keywords
#9336 Unscheduled minor Some DICOM files do not read all planes DicomReader, external

docs (2 matches)

Ticket Milestone Priority Summary Keywords
#4171 Unscheduled major Overwriting compressed planes doesn't always work export, external, docs
#6311 Unscheduled trivial Add tooltips to the OME-XML window in ImageJ imagej, model, docs

EasyRatioPro (1 match)

Ticket Milestone Priority Summary Keywords
#13015 Unscheduled major Add support for EasyRatioPro format EasyRatioPro, new-format, external

EPSReader (1 match)

Ticket Milestone Priority Summary Keywords
#4102 Unscheduled minor Add support for vector data in PS/EPS files EPSReader

export (11 matches)

Ticket Milestone Priority Summary Keywords
#4133 Pyramids major OME-XML writer does not support saving tiles export, OMEXMLWriter
#9901 Pyramids major Refactor PyramidTiffReader out of MinimalTiffReader export, pyramid
#4128 Unscheduled major AVI writer does not support saving tiles export, AVIWriter
#4129 Unscheduled major APNG writer does not support saving tiles export, APNGWriter
#4131 Unscheduled major JPEG-2000 writer does not support saving tiles export, JPEG2000Writer
#4132 Unscheduled major JPEG writer does not support saving tiles export, JPEGWriter
#4167 Unscheduled major Writers do not support overwriting metadata export
#4171 Unscheduled major Overwriting compressed planes doesn't always work export, external, docs
#6721 Unscheduled major Investigate improving performance of TIFF export with setWriteSequential(false) export, TiffWriter, external
#8126 Unscheduled minor RFE: Allow writing of AVI 2.0 files export, AVIWriter
#10612 Unscheduled minor Export: prevent overwriting of existing files export

export (6 matches)

Ticket Milestone Priority Summary Keywords
#4107 Unscheduled major More robust support for 1, 2 and 4 bit images model, TiffReader, export
#4155 Unscheduled major Expand (and clean up) use of new 'setWriteSequentially' method api, export
#4157 Unscheduled major Make it easier to get/set the pixels' compression type api, codec, export, external
#11831 Unscheduled minor Attempt to improve metadata exported from ImageJ imagej, export
#11967 Unscheduled minor RFE: ImageJ plugin interface does not expose reader-specific export options QTWriter, imagej, export
#12678 Unscheduled minor Allow bfconvert file patterns to use configurable number of digits tools, export

external (48 matches)

Ticket Milestone Priority Summary Keywords
#13004 Pyramids minor RFE : Optimise performance for reading tiles in big Images performance, external
#4097 Unscheduled major Add support for Patch-Master electrophysiology files new-format, external
#4104 Unscheduled major Add support for HDF files produced by Huygens new-format, hdf, external
#4113 Unscheduled major Add support for .nex file format new-format, external
#4117 Unscheduled major Support for Group 3 Fax TIFF compression codec, TiffReader, external, new-feature
#4120 Unscheduled major Add support for Intervision MV format new-format, external
#4124 Unscheduled major Add support for Matlab matrix files new-format, external
#4125 Unscheduled major Add support for OpenEXR files new-format, external
#4157 Unscheduled major Make it easier to get/set the pixels' compression type api, codec, export, external
#4169 Unscheduled major Add support for Micro-CT VOL files new-format, external
#4171 Unscheduled major Overwriting compressed planes doesn't always work export, external, docs
#4177 Unscheduled major Certain JPEG-2000 files are not read correctly JPEG2000Reader, codec, external
#4185 Unscheduled major Add support for Zeiss FCS files new-format, external
#6721 Unscheduled major Investigate improving performance of TIFF export with setWriteSequential(false) export, TiffWriter, external
#6824 Unscheduled major Add support for .emi files new-format, external
#7092 Unscheduled major Improve metadata support for Cellomics datasets CellomicsReader, external
#8336 Unscheduled major Add support for Zeiss Orion data new-format, external
#8428 Unscheduled major Add support for DV-DIF files new-format, external
#8792 Unscheduled major Add support for .ser files new-format, external
#10903 Unscheduled major Add support for Ariol data new-format, external
#11379 Unscheduled major Add support for PerkinElmer Living Image data new-format, external
#12057 Unscheduled major Add support for FEI .ser data new-format, external
#12245 Unscheduled major Add support for Incucyte data new-format, external
#12483 Unscheduled major Add support for MetaSystems .vsi data new-format, external
#12584 Unscheduled major Add support for .oct files new-format, external
#12730 Unscheduled major Add support for Tissuegnostics data new-format, external
#12731 Unscheduled major Update L2DReader to support Li-Cor Odyssey data L2DReader, external, new-format
#12836 Unscheduled major Read lookup tables from Imspector .msr files OBFReader, external
#12841 Unscheduled major Bug: Imspector channels detected incorrectly OBFReader, external, our-fault
#12899 Unscheduled major Add support for Ventana .bif data new-format, external
#13015 Unscheduled major Add support for EasyRatioPro format EasyRatioPro, new-format, external
#13120 Unscheduled major Add support for RayScan .rec data new-format, external
#13136 Unscheduled major Add support for Berthold Nightshade data new-format, external
#13253 Unscheduled major Add support for new Leica LOF format new-format, external
#4115 Unscheduled minor Add support for scanning microscopy formats new-format, external
#4152 Unscheduled minor LSM reader XT linescan opened as XY model, ZeissLSMReader, external
#6413 Unscheduled minor Fix support for RGB Volocity clipping files VolocityClippingReader, external
#7701 Unscheduled minor Add support for Bruker Optics data new-format, external
#9037 Unscheduled minor Add support for QuickTime H.264 NativeQTReader, external, codec
#9336 Unscheduled minor Some DICOM files do not read all planes DicomReader, external
#9516 Unscheduled minor RFE: add support for SICM data new-format, external
#12898 Unscheduled minor Extend Bio-Formats Macro Extensions to extract Channel name,etc. imagej, external
#12938 Unscheduled minor Text image file support new-format, external
#13064 Unscheduled minor RFE: New Reader for Picoquant HydraHarp (.pt3) new-format, external
#13106 Unscheduled minor TiffReader: Does not handle YCbCr conversion TiffReader YCbCr, external
#13178 Unscheduled minor BUG: Unsupported Compression Type 1145656920 for AVIReader codec, AVIReader, external
#4148 Unscheduled trivial Native support for Quicktime Sorenson 1 codec (SVQ1) NativeQTReader, codec, external
#6375 Unscheduled trivial Add basic support for PDF files new-format, external

FlexReader (1 match)

Ticket Milestone Priority Summary Keywords
#4165 Unscheduled major Consider writing decoder for compressed Flex files codec, FlexReader

FV1000Reader (1 match)

Ticket Milestone Priority Summary Keywords
#5873 Unscheduled minor openThumb* should return the stored thumbnail for FV1000 files FV1000Reader

hdf (1 match)

Ticket Milestone Priority Summary Keywords
#9652 Unscheduled major Improve performance of HDF-based readers hdf, ImarisReader

hdf (2 matches)

Ticket Milestone Priority Summary Keywords
#4104 Unscheduled major Add support for HDF files produced by Huygens new-format, hdf, external
#12257 Unscheduled major netCDF cannot open certain large .ims files ImarisHDFReader, hdf, netcdf

imagej (6 matches)

Ticket Milestone Priority Summary Keywords
#4089 Unscheduled major FB 863: Allow sending feedback from loci tools imagej
#4126 Unscheduled major Allow user to specify dimensions during stack concatenation imagej
#4163 Unscheduled major Make error message windows more friendly imagej
#11831 Unscheduled minor Attempt to improve metadata exported from ImageJ imagej, export
#12898 Unscheduled minor Extend Bio-Formats Macro Extensions to extract Channel name,etc. imagej, external
#6311 Unscheduled trivial Add tooltips to the OME-XML window in ImageJ imagej, model, docs

imagej (1 match)

Ticket Milestone Priority Summary Keywords
#11967 Unscheduled minor RFE: ImageJ plugin interface does not expose reader-specific export options QTWriter, imagej, export

ImarisHDFReader (1 match)

Ticket Milestone Priority Summary Keywords
#12257 Unscheduled major netCDF cannot open certain large .ims files ImarisHDFReader, hdf, netcdf

ImarisReader (1 match)

Ticket Milestone Priority Summary Keywords
#9652 Unscheduled major Improve performance of HDF-based readers hdf, ImarisReader

improvement (1 match)

Ticket Milestone Priority Summary Keywords
#12385 Unscheduled minor Unnecessary thread safety from Vector? improvement

IO (1 match)

Ticket Milestone Priority Summary Keywords
#12276 Pyramids critical Allow inspection of optimal reading order IO

jpeg2000 (1 match)

Ticket Milestone Priority Summary Keywords
#9544 Unscheduled major Bug: very large .jp2 files do not import correctly jpeg2000

jpeg2000 (1 match)

Ticket Milestone Priority Summary Keywords
#6229 Pyramids major Bio-Formats JAI ImageIO service examination codec, jpeg2000

JPEG2000Reader (1 match)

Ticket Milestone Priority Summary Keywords
#4177 Unscheduled major Certain JPEG-2000 files are not read correctly JPEG2000Reader, codec, external

JPEG2000Writer (1 match)

Ticket Milestone Priority Summary Keywords
#4131 Unscheduled major JPEG-2000 writer does not support saving tiles export, JPEG2000Writer

JPEGReader (1 match)

Ticket Milestone Priority Summary Keywords
#13098 Unscheduled minor BUG: JPEG Reader (Could not determine subsample type) turbojpeg, JPEGReader

JPEGWriter (1 match)

Ticket Milestone Priority Summary Keywords
#4132 Unscheduled major JPEG writer does not support saving tiles export, JPEGWriter

L2DReader (1 match)

Ticket Milestone Priority Summary Keywords
#12731 Unscheduled major Update L2DReader to support Li-Cor Odyssey data L2DReader, external, new-format

LIFReader our-fault (1 match)

Ticket Milestone Priority Summary Keywords
#12237 Unscheduled minor Bug: LIFReader: Original metadata regression from 4.4 LIFReader our-fault

LIMReader (1 match)

Ticket Milestone Priority Summary Keywords
#4091 Unscheduled minor Add support for compressed LIM files codec, LIMReader

metadata (2 matches)

Ticket Milestone Priority Summary Keywords
#11862 GatherReqs minor Bug: OME-TIFF support for reading and writing complex pixel types metadata
#12599 GatherReqs minor Bug: OMERO clients report BIT pixel type as uint8 metadata, model

MetamorphReader (1 match)

Ticket Milestone Priority Summary Keywords
#8875 Unscheduled minor Add some missing Metamorph screen metadata MetamorphReader

MinimalTiffReader (1 match)

Ticket Milestone Priority Summary Keywords
#13144 Unscheduled minor Bug: Minimal Tiff Reader - Index out of bounds exception MinimalTiffReader, our-fault

model (7 matches)

Ticket Milestone Priority Summary Keywords
#11860 GatherReqs major Bug: FormatTools support for complex numbers model
#11861 GatherReqs major Bug: DeltaVision reader does not support complex pixel formats model
#4107 Unscheduled major More robust support for 1, 2 and 4 bit images model, TiffReader, export
#4100 Unscheduled minor Handle mixed OME/non-OME XML blocks model, OMEXMLReader
#4103 Unscheduled minor Add enumeration for OME-XML versions model
#4152 Unscheduled minor LSM reader XT linescan opened as XY model, ZeissLSMReader, external
#8215 Unscheduled minor Set up some way of mapping plane indices to file names model, api

model (2 matches)

Ticket Milestone Priority Summary Keywords
#12599 GatherReqs minor Bug: OMERO clients report BIT pixel type as uint8 metadata, model
#6311 Unscheduled trivial Add tooltips to the OME-XML window in ImageJ imagej, model, docs

NativeQTReader (2 matches)

Ticket Milestone Priority Summary Keywords
#9037 Unscheduled minor Add support for QuickTime H.264 NativeQTReader, external, codec
#4148 Unscheduled trivial Native support for Quicktime Sorenson 1 codec (SVQ1) NativeQTReader, codec, external

NativeQTReader (1 match)

Ticket Milestone Priority Summary Keywords
#4082 Unscheduled trivial Support for QuickTime Sorenson 3 codec codec, NativeQTReader

ND2Reader (1 match)

Ticket Milestone Priority Summary Keywords
#13262 minor RFE: nd2 files with strange characters in metadata ND2Reader

netcdf (1 match)

Ticket Milestone Priority Summary Keywords
#12257 Unscheduled major netCDF cannot open certain large .ims files ImarisHDFReader, hdf, netcdf

new-feature (1 match)

Ticket Milestone Priority Summary Keywords
#4117 Unscheduled major Support for Group 3 Fax TIFF compression codec, TiffReader, external, new-feature

new-format (2 matches)

Ticket Milestone Priority Summary Keywords
#12731 Unscheduled major Update L2DReader to support Li-Cor Odyssey data L2DReader, external, new-format
#13015 Unscheduled major Add support for EasyRatioPro format EasyRatioPro, new-format, external

new-format (43 matches)

Ticket Milestone Priority Summary Keywords
#4097 Unscheduled major Add support for Patch-Master electrophysiology files new-format, external
#4104 Unscheduled major Add support for HDF files produced by Huygens new-format, hdf, external
#4113 Unscheduled major Add support for .nex file format new-format, external
#4120 Unscheduled major Add support for Intervision MV format new-format, external
#4121 Unscheduled major Add support for Mirax data new-format
#4124 Unscheduled major Add support for Matlab matrix files new-format, external
#4125 Unscheduled major Add support for OpenEXR files new-format, external
#4147 Unscheduled major Add support for Varian FID files new-format
#4159 Unscheduled major Add support for DICOM supplement #145 new-format
#4169 Unscheduled major Add support for Micro-CT VOL files new-format, external
#4179 Unscheduled major Add support for Leica Stereo Microscope data new-format
#4185 Unscheduled major Add support for Zeiss FCS files new-format, external
#6824 Unscheduled major Add support for .emi files new-format, external
#8336 Unscheduled major Add support for Zeiss Orion data new-format, external
#8428 Unscheduled major Add support for DV-DIF files new-format, external
#8792 Unscheduled major Add support for .ser files new-format, external
#10903 Unscheduled major Add support for Ariol data new-format, external
#11303 Unscheduled major Add support for P250 Pannoramic MRXS data new-format
#11379 Unscheduled major Add support for PerkinElmer Living Image data new-format, external
#11568 Unscheduled major Add support for FreeSurfer MGH files new-format
#12057 Unscheduled major Add support for FEI .ser data new-format, external
#12245 Unscheduled major Add support for Incucyte data new-format, external
#12483 Unscheduled major Add support for MetaSystems .vsi data new-format, external
#12584 Unscheduled major Add support for .oct files new-format, external
#12730 Unscheduled major Add support for Tissuegnostics data new-format, external
#12899 Unscheduled major Add support for Ventana .bif data new-format, external
#13120 Unscheduled major Add support for RayScan .rec data new-format, external
#13136 Unscheduled major Add support for Berthold Nightshade data new-format, external
#13253 Unscheduled major Add support for new Leica LOF format new-format, external
#4106 Unscheduled minor Add support for MPEG-2/.vob files new-format, codec
#4115 Unscheduled minor Add support for scanning microscopy formats new-format, external
#4213 Unscheduled minor Add support for MetaFluor/OptoFluor data new-format
#7701 Unscheduled minor Add support for Bruker Optics data new-format, external
#9516 Unscheduled minor RFE: add support for SICM data new-format, external
#9932 Unscheduled minor Add support for OASIS slide datasets new-format
#10025 Unscheduled minor Add support for MetaIO files new-format
#11318 Unscheduled minor EMBL-Heidelberg Format new-format
#11666 Unscheduled minor Add support for EVOS data new-format
#12897 Unscheduled minor RFE: parse metadata from U. Fribourg 2-photon data new-format
#12938 Unscheduled minor Text image file support new-format, external
#13064 Unscheduled minor RFE: New Reader for Picoquant HydraHarp (.pt3) new-format, external
#6375 Unscheduled trivial Add basic support for PDF files new-format, external
#10340 Unscheduled trivial Add support for VTK files new-format

OBFReader (2 matches)

Ticket Milestone Priority Summary Keywords
#12836 Unscheduled major Read lookup tables from Imspector .msr files OBFReader, external
#12841 Unscheduled major Bug: Imspector channels detected incorrectly OBFReader, external, our-fault

OMETiffReader (1 match)

Ticket Milestone Priority Summary Keywords
#12740 OME-Files minor Bug: Miscellaneous OMETiffReader defects OMETiffReader

OMEXMLReader (1 match)

Ticket Milestone Priority Summary Keywords
#13270 Unscheduled major Bug: images not matching with well placement OMEXMLReader

OMEXMLReader (1 match)

Ticket Milestone Priority Summary Keywords
#4100 Unscheduled minor Handle mixed OME/non-OME XML blocks model, OMEXMLReader

OMEXMLWriter (1 match)

Ticket Milestone Priority Summary Keywords
#4133 Pyramids major OME-XML writer does not support saving tiles export, OMEXMLWriter

our-fault (2 matches)

Ticket Milestone Priority Summary Keywords
#12841 Unscheduled major Bug: Imspector channels detected incorrectly OBFReader, external, our-fault
#13144 Unscheduled minor Bug: Minimal Tiff Reader - Index out of bounds exception MinimalTiffReader, our-fault

performance (1 match)

Ticket Milestone Priority Summary Keywords
#13004 Pyramids minor RFE : Optimise performance for reading tiles in big Images performance, external

PSDReader (1 match)

Ticket Milestone Priority Summary Keywords
#4108 Unscheduled minor Vector .psd files not supported PSDReader

pyramid (1 match)

Ticket Milestone Priority Summary Keywords
#9901 Pyramids major Refactor PyramidTiffReader out of MinimalTiffReader export, pyramid

QTWriter (1 match)

Ticket Milestone Priority Summary Keywords
#11967 Unscheduled minor RFE: ImageJ plugin interface does not expose reader-specific export options QTWriter, imagej, export

schema (1 match)

Ticket Milestone Priority Summary Keywords
#6309 Unscheduled minor Bio-Formats to provide strict and lax validation schema, validator

SlidebookReader (1 match)

Ticket Milestone Priority Summary Keywords
#11560 Unscheduled minor Bug: Incorrect pixel offsets for some .spl files SlidebookReader

TiffReader (4 matches)

Ticket Milestone Priority Summary Keywords
#4107 Unscheduled major More robust support for 1, 2 and 4 bit images model, TiffReader, export
#4117 Unscheduled major Support for Group 3 Fax TIFF compression codec, TiffReader, external, new-feature
#4090 Unscheduled minor Better usage of JAI Image I/O Tools codec, TiffReader
#7781 Unscheduled minor Support for Group 4 fax compression codec, TiffReader

TiffReader YCbCr (1 match)

Ticket Milestone Priority Summary Keywords
#13106 Unscheduled minor TiffReader: Does not handle YCbCr conversion TiffReader YCbCr, external

TiffWriter (1 match)

Ticket Milestone Priority Summary Keywords
#6721 Unscheduled major Investigate improving performance of TIFF export with setWriteSequential(false) export, TiffWriter, external

tools (1 match)

Ticket Milestone Priority Summary Keywords
#12678 Unscheduled minor Allow bfconvert file patterns to use configurable number of digits tools, export

turbojpeg (1 match)

Ticket Milestone Priority Summary Keywords
#13098 Unscheduled minor BUG: JPEG Reader (Could not determine subsample type) turbojpeg, JPEGReader

validator (1 match)

Ticket Milestone Priority Summary Keywords
#6309 Unscheduled minor Bio-Formats to provide strict and lax validation schema, validator

VolocityClippingReader (1 match)

Ticket Milestone Priority Summary Keywords
#6413 Unscheduled minor Fix support for RGB Volocity clipping files VolocityClippingReader, external

ZeissLSMReader (1 match)

Ticket Milestone Priority Summary Keywords
#4152 Unscheduled minor LSM reader XT linescan opened as XY model, ZeissLSMReader, external
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