Task #11695 (closed)
Opened 10 years ago
Closed 9 years ago
Bug: Bio-Formats plugin exporter does not save ROIs from the ROI manager
| Reported by: | rleigh | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | 5.1.0-m3 |
| Component: | Bio-Formats | Version: | 4.4.9 |
| Keywords: | n.a. | Cc: | hadrien.mary@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
The Bio-Formats ImageJ plugin imports ROIs from OME-TIFF into the ROI manager (though not by default--this must be selected in import options). It also appears to export the same ROIs, though this is apparently due to caching of the imported OME-XML.
In the general case, newly-created (not imported) ROIs are not saved when using the Bio-Formats exporter. Ideally, we should be able to save the current state of the ROI manager as part of the generated OME-XML for the export.
Some thoughts:
- Saving should probably be optional; we might not want the ROI manager ROIs to be saved
- This could be included as a checkbox on the split file dialogue; maybe this could be changed into a more general "Export options" similar to import.
- It might also need to include the "current" ROI which may or may not be in the manager
- Perhaps optionally only export the selected ROIs in the manager; we might not want to export everything.
- Maybe the ROI import should default to being enabled? Or does this cause problems if opening multiple images?
Change History (2)
comment:1 Changed 10 years ago by mlinkert
- Milestone changed from Unscheduled to 5.0.4
comment:2 Changed 9 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
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Fixed by https://github.com/openmicroscopy/bioformats/pull/1442