User Story #3215 (accepted)
Opened 13 years ago
Last modified 8 years ago
Import and Attachments
Reported by: | jburel | Owned by: | |
---|---|---|---|
Priority: | critical | Milestone: | Metadata |
Component: | General | Keywords: | paris2011 |
Cc: | jamoore, wmoore, mlinkert, cxallan, saloynton, rkferguson, rleigh | Story Points: | n.a. |
Sprint: | n.a. | Importance: | n.a. |
Total Remaining Time: | 1.0d | Estimated Remaining Time: | n.a. |
Description (last modified by jburel)
Images are imported with some attachments, sometimes a large number of them.
e.g. oif files might end up having .lut, .roi, .pyt etc.
- Improve handling of ROI at import time.
- possibly create a .zip with the attachments metadata.
- .zip for measurements, etc.
Follow a list of formats with ROI parsed by B-F:
- BD-Pathway
- FV1000
- IPLab
- Leica LEI
- LI-FLIM
- MIAS
- ND2
- Zeiss LSM
- Zeiss ZVI.
Change History (11)
comment:1 Changed 13 years ago by jburel
- Description modified (diff)
comment:2 Changed 13 years ago by jmoore
- Keywords paris2011 added
- Milestone changed from Unscheduled to OMERO-Beta4.3.2
comment:3 Changed 13 years ago by jburel
- Milestone changed from OMERO-Beta4.3.2 to Usability Backlog
comment:4 Changed 12 years ago by jburel
- Cc saloynton added; bwzloranger removed
- Milestone changed from Usability Backlog to OMERO-Beta4.4
comment:5 Changed 12 years ago by agilo
- Status changed from new to accepted
Updated status, related task in progress
comment:6 Changed 12 years ago by jburel
List of files with ROI
bd-pathway/bram/42_6_1_100208_BJWT_LOPAC_05_08_10nM_R1/2010-02-19_000/Experiment.exp bd-pathway/darren/2009-05-01_000/Experiment.exp bd-pathway/darren/2009-05-01_001/Experiment.exp fv1000/kashif/OIF_V1/Sample_XYZ.oif fv1000/kashif/OIF_V2/Sample_XYZ.oif iplab/tony/4mtD3cpv_W_1.ipl iplab/tony/pcam_W_1.ipl leica-lif/melissa/LIF2_test-with-ROIs.lif leica-lif/melissa/roi-test-0.lif leica-lif/melissa/roi-test-1.lif li-flim/qian/vxl-mbad-737-1um-01687.fli li-flim/samples/lifetime-extended.fli li-flim/samples/lifetime-simple.fli li-flim/samples/reference-extended.fli li-flim/samples/reference-simple.fli li-flim/samples/sample-extended.fli li-flim/samples/sample-simple.fli li-flim/jean-marie/Flimdata/C Reference fluorescein4ns-CFPbpFILTER.fli li-flim/jean-marie/Flimdata/C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli li-flim/jean-marie/Flimdata/D Reference fluorescein4ns-CFPbpFILTER-multifreq.fli li-flim/jean-marie/Flimdata/D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli li-flim/jean-marie/Flimdata/lif_C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli li-flim/jean-marie/Flimdata/lif_D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli mias/frans/MIAS 3 D set 2 july 13 2009/ mias/frans/MIAS 3D set 3 july 13 2009/ mias/frans/NEO-Exp13072008-long-protokol/ mias/frans/One MNU Plate/ mias/frans/One Plate/ mias/frans/siRNA_PRIM1_03102008/ zeiss-czi/zeiss/samples/FluoCells_DCV-Teststack.czi zeiss-czi/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/3D/Calcium_4D_002.czi zeiss-czi/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/3D/Zstack_003.czi zeiss-czi/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Bleach/bleach.czi zeiss-czi/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Bleach/bleach16bit.czi zeiss-czi/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-01_Tinting_Annotationen_MeasFeatures.czi zeiss-czi/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-01_Tinting_Annotationen_MeasFeatures_V03.czi zeiss-czi/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-01_Tinting_Annotationen_MeasFeatures_V03_ohneFocusPos.czi zeiss-czi/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-04_Annotationen.czi zeiss-czi/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-04_Tinting_Annotations.czi zeiss-czi/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/Annotation_Measurment_V01.czi zeiss-czi/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Unspecified/Longterm-Timelapse_Buters.czi zeiss-lsm/melissa/lsm-with-overlays.lsm zeiss-zvi/converted/WTZER_Series76_z003_ch00-with-ROIs.zvi
comment:7 Changed 12 years ago by jburel
- Cc rkferguson added
Scott, Gus we should start looking at those files as soon as possible to see if rois are imported.
comment:8 Changed 12 years ago by jburel
- Cc rleigh added
comment:9 Changed 12 years ago by jburel
- Milestone changed from OMERO-Beta4.4 to OMERO-Beta4.5
comment:10 Changed 11 years ago by jamoore
- Milestone changed from OMERO-5 to OMERO-4.4.8
Moving to 4.4.8 for evaluation for the next stable release since this doesn't seem specifically FS related. If this should be moved to "Unscheduled" along with #5936, feel free.
comment:11 Changed 8 years ago by jamoore
- Milestone changed from 5.x to Metadata
Adding to 4.3.2 for investigation per Paris 2011 Users' meeting.