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User Story #4258 (closed)

Opened 13 years ago

Closed 9 years ago

Color Results visualization

Reported by:	jburel	Owned by:	jburel
Priority:	critical	Milestone:	Unscheduled
Component:	Insight	Keywords:	n.a.
Cc:	dzmacdonald	Story Points:	n.a.
Sprint:	n.a.	Importance:	n.a.
Total Remaining Time:	0.0d	Estimated Remaining Time:	n.a.

Description (last modified by dzmacdonald)

Color dialog support see, screenshot

References

Referenced by:

← User Story (#1970): FLIM in OMERO
References:
→ Task (#4876): change FLIM Rapid portlet ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5173): Set up and install new VM ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5123): Lifetime Chart: Clicking on heatmap should update lifetime values ( Owner: jburel Remaining Time: 0 ) → Task (#5124): Histogram: Picking in histogram, update heatmap ( Owner: jburel Remaining Time: 0 ) → Task (#5125): Histogram: Colourmap should allow overlapping values ( Owner: jburel Remaining Time: 0 ) → Task (#5122): Histogram: Change x-axis values ( Owner: jburel Remaining Time: 0 ) → Task (#5297): Heatmap: Fix value on threshold ( Owner: jburel Remaining Time: 0 ) → Task (#4264): HeatMap ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5288): Flim: Histogram, x-axis values ( Owner: jburel Remaining Time: 0 ) → Task (#5293): FLIM:Table, export to excel ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5208): FLIM: add button to clear stats table ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5292): FLIM: Table, row visibility ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#4804): FLIM: Refactor Charting code ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#4263): FLIM: Plotting results stats ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5287): FLIM: Histogram, we need to investigate binning ( Owner: jburel ) → Task (#5299): FLIM: Histogram, we need to have more efficient methods for calculating stats ( Owner: jburel Remaining Time: 0 ) → Task (#5291): FLIM: Histogram, global and bin stat visibility ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5289): FLIM: Histogram, cursor more visible ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5290): FLIM: Histogram, add Jet map to colourmap ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#4803): FLIM: Histogram ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5294): FLIM: Heatmap, thresholding two knob slider ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5295): FLIM: Heatmap, add best guess to threshold ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5121): FLIM: Best guess the threshold on the heatmap slider ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5286): FLIM: Analysis parameters ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5120): FLIM: Add two knob slider to select colour ranges in colourmap ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5119): FLIM: Add threshold slider in Dialog ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5152): FLIM: Add stats from range selected in colourmap ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5153): FLIM: Add range stats table next to the lifetime chart ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5207): FLIM: Add button to change RGB to BGR ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5126): FLIM component locations in dialog ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#4877): FLIM Script ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5243): BUG: fix file selection in FLIM dialog ( Owner: dzmacdonald Remaining Time: 0 ) → Task (#5244): BUG: Picking in the chart ( Owner: dzmacdonald Remaining Time: 0 )

Attachments (4)

1.JPG (187.1 KB) - added by jburel 13 years ago.
3.JPG (213.7 KB) - added by jburel 13 years ago.
2.JPG (201.9 KB) - added by jburel 13 years ago.
FLIMDialog.tiff (94.5 KB) - added by dzmacdonald 13 years ago.: FLIM DIalog, sprint 11

Download all attachments as: .zip

Change History (13)

comment:1 Changed 13 years ago by jburel

Remaining Time set to 1
Summary changed from Results visualization to Color Results visualization

Changed 13 years ago by jburel

Attachment 1.JPG added

Changed 13 years ago by jburel

Attachment 3.JPG added

Changed 13 years ago by jburel

Attachment 2.JPG added

comment:2 Changed 13 years ago by jburel

Cc dzmacdonald added
Owner changed from dzmacdonald to jburel
Status changed from new to assigned

comment:3 Changed 13 years ago by dzmacdonald

Type changed from Task to User Story

comment:4 Changed 13 years ago by dzmacdonald

Status changed from assigned to new

comment:5 Changed 13 years ago by agilo

Status changed from new to accepted

Updated status, related task in progress

comment:6 Changed 13 years ago by dzmacdonald

Description modified (diff)

Meeting 5/4/11

Present: Saskia, Jean-Marie, Donald

Meeting to validate the work done in tickets relating to display of results in Insight. The conclusions are:

Update fixed parameter in RAPID portlet to a checkbox #4876
- Change the names of the files stored by the script #4877
Update the general layout to be closer to the image in [1.JPG] #4879
- Move heatmap to left
- Heatmap
  - allow picking of heatmap to get lifetime values #4887
  - Change background colour of heatmap to black. #4882
- Histogram
  - allow picking in histogram to highlight values in heatmap that correspond to bin/s selected #4883
  - change x-axis of the histogram to fret efficency values % #4884
  - colourmap should have separate text fields for RGB value ranges, continous/discrete, RGB/RGB #4885
  - colourmap should allow overlap between colour ranges #4886
- Lifetime chart should be added to the dialog
  - Clicking on heatmap should update lifetime values. #4887
  - The values should also show statistics associated with lifetimes. #4887

Last edited 13 years ago by dzmacdonald (previous) (diff)

Changed 13 years ago by dzmacdonald

Attachment FLIMDialog.tiff added

FLIM DIalog, sprint 11

comment:7 Changed 13 years ago by jburel

Referencing ticket #1970 has changed sprint.

comment:8 Changed 13 years ago by jburel

Milestone changed from OMERO-Beta4.3 to Unscheduled

comment:9 Changed 9 years ago by jburel

Resolution set to fixed
Status changed from accepted to closed

all tasks completed. Closing

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