Task #9336 (new)
Opened 12 years ago
Last modified 8 years ago
Some DICOM files do not read all planes
| Reported by: | crueden-x | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | OMERO-5.2.0 |
| Keywords: | DicomReader, external | Cc: | nkoenig@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
We have a sample DICOM file that is ~138MB, but detects has having a single RGB plane of size 636 x 422.
The problem appears to be that it has no NUMBER_OF_FRAMES (0x00280008) tag. It does have a mystery tag 0x20000 though, with integer value 180, which is very close to how many uncompressed planes the file "should" have given its file size: 144713460 / 180 ~= 803963 ~= 805176 = 636 x 422 x 3.
The file is dicom/niklas/C549QG9U.
Change History (5)
comment:1 Changed 12 years ago by crueden-x
- Cc nkoenig@… added
comment:2 Changed 12 years ago by mlinkert
- Milestone changed from OMERO-4.5 to OMERO-4.4.1
comment:3 Changed 12 years ago by mlinkert
- Milestone changed from OMERO-4.4.3 to OMERO-4.5
comment:4 Changed 8 years ago by jamoore
- Milestone changed from 5.x to Unscheduled
comment:5 Changed 8 years ago by mlinkert
- Keywords DicomReader external added
- Version set to OMERO-5.2.0
Keeping ownership of this for now.
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You may also have a look at Agilo extensions to the ticket.
For what it's worth, I haven't been able to find any other software that handles this file correctly.
Pushing to the next release, as we're almost out of time for 4.4.3.