Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #9819 (closed)

Opened 11 years ago

Closed 11 years ago

BUG: Search in Insight with ***

Reported by: pwalczysko Owned by: jburel
Priority: major Milestone: OMERO-4.4.7
Component: Insight Version: n.a.
Keywords: n.a. Cc: rkferguson
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2013-03-12 (6))

Description (last modified by pwalczysko)

Dowloaded the build. Logged in on Howe.
Put * into the Search. Also * causes now the problem. But not /, ?, @ for example.
Error message "Data retrieval failure" followed.

java.lang.Exception: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot perform the search.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:860)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.performSearch(OMEROGateway.java:5169)
	at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.advancedSearchFor(OmeroDataServiceImpl.java:641)
	at org.openmicroscopy.shoola.env.data.views.calls.ObjectFinder$1.doCall(ObjectFinder.java:90)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: omero.InternalException
    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.apache.lucene.search.BooleanQuery$TooManyClauses):
                        maxClauseCount is set to 1024
                        	at org.apache.lucene.search.BooleanQuery.add(BooleanQuery.java:163)
                        	at org.apache.lucene.search.BooleanQuery.add(BooleanQuery.java:154)
                        	at org.apache.lucene.search.MultiTermQuery.rewrite(MultiTermQuery.java:63)
                        	at org.apache.lucene.search.WildcardQuery.rewrite(WildcardQuery.java:54)
                        	at org.apache.lucene.search.BooleanQuery.rewrite(BooleanQuery.java:383)
                        	at org.apache.lucene.search.IndexSearcher.rewrite(IndexSearcher.java:162)
                        	at org.apache.lucene.search.Query.weight(Query.java:94)
                        	at org.apache.lucene.search.Searcher.createWeight(Searcher.java:185)
                        	at org.apache.lucene.search.Searcher.search(Searcher.java:136)
                        	at org.hibernate.search.query.QueryHits.updateTopDocs(QueryHits.java:100)
                        	at org.hibernate.search.query.QueryHits.<init>(QueryHits.java:61)
                        	at org.hibernate.search.query.QueryHits.<init>(QueryHits.java:51)
                        	at org.hibernate.search.query.FullTextQueryImpl.getQueryHits(FullTextQueryImpl.java:373)
                        	at org.hibernate.search.query.FullTextQueryImpl.list(FullTextQueryImpl.java:293)
                        	at ome.services.search.FullText.doWork(FullText.java:202)
                        	at sun.reflect.GeneratedMethodAccessor255.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:597)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy65.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:406)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:350)
                        	at ome.services.SearchBean.hasNext(SearchBean.java:262)
                        	at ome.services.SearchBean.results(SearchBean.java:301)
                        	at sun.reflect.GeneratedMethodAccessor1534.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:597)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy107.results(Unknown Source)
                        	at sun.reflect.GeneratedMethodAccessor1534.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:597)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy107.results(Unknown Source)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:597)
                        	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
                        	at ome.services.throttling.Callback.run(Callback.java:56)
                        	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
                        	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150)
                        	at ome.services.blitz.impl.SearchI.results_async(SearchI.java:336)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:597)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at omero.cmd.CallContext.invoke(CallContext.java:59)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy108.results_async(Unknown Source)
                        	at omero.api._SearchTie.results_async(_SearchTie.java:344)
                        	at omero.api._SearchDisp.___results(_SearchDisp.java:1326)
                        	at omero.api._SearchDisp.__dispatch(_SearchDisp.java:1651)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.InternalException"
    message = " Wrapped Exception: (org.apache.lucene.search.BooleanQuery$TooManyClauses):
               maxClauseCount is set to 1024"
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._SearchDelM.results(_SearchDelM.java:1862)
	at omero.api.SearchPrxHelper.results(SearchPrxHelper.java:2797)
	at omero.api.SearchPrxHelper.results(SearchPrxHelper.java:2769)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleSearchResult(OMEROGateway.java:961)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.performSearch(OMEROGateway.java:5156)
	... 9 more

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:189)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:287)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:257)
	at org.openmicroscopy.shoola.agents.util.finder.FinderLoader.handleException(FinderLoader.java:196)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:702)
	at java.awt.EventQueue.access$400(EventQueue.java:82)
	at java.awt.EventQueue$2.run(EventQueue.java:663)
	at java.awt.EventQueue$2.run(EventQueue.java:661)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:672)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

Attachments (1)

Data retrieval failure after *** in search.png​ (70.8 KB) - added by pwalczysko 11 years ago.

Download all attachments as: .zip

Change History (7)

Changed 11 years ago by pwalczysko

comment:1 Changed 11 years ago by pwalczysko

  • Description modified (diff)

comment:2 Changed 11 years ago by jburel

  • Sprint changed from 2012-11-20 (2) to 2012-12-18 (3)

Moved from sprint 2012-11-20 (2)

comment:3 Changed 11 years ago by jburel

  • Sprint changed from 2012-12-18 (3) to 2013-01-15 (4)

Moved from sprint 2012-12-18 (3)

comment:4 Changed 11 years ago by jburel

  • Sprint changed from 2013-01-15 (4) to 2013-02-12 (5)

Moved from sprint 2013-01-15 (4)

comment:5 Changed 11 years ago by jburel

  • Sprint changed from 2013-02-12 (5) to 2013-03-12 (6))

Moved from sprint 2013-02-12 (5)

comment:6 Changed 11 years ago by jburel

  • Resolution set to fixed
  • Status changed from new to closed

cannot reproduce the problem
I have tried logged in as different user and in various group.
Closing, re-open if need be

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.95048 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!