1 | 2010-11-09 07:42:51 |
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2 | Full thread dump Java HotSpot(TM) 64-Bit Server VM (14.3-b01 mixed mode): |
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3 | |
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4 | "Attach Listener" daemon prio=10 tid=0x00000000404a8800 nid=0x4d9c waiting on condition [0x0000000000000000] |
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5 | java.lang.Thread.State: RUNNABLE |
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6 | |
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7 | "SIGTERM handler" daemon prio=10 tid=0x0000000040bdf000 nid=0x635b waiting for monitor entry [0x00002b390e205000] |
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8 | java.lang.Thread.State: BLOCKED (on object monitor) |
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9 | at java.lang.Shutdown.exit(Shutdown.java:168) |
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10 | - waiting to lock <0x00002b38e20174d8> (a java.lang.Class for java.lang.Shutdown) |
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11 | at java.lang.Terminator$1.handle(Terminator.java:35) |
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12 | at sun.misc.Signal$1.run(Signal.java:195) |
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13 | at java.lang.Thread.run(Thread.java:619) |
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14 | |
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15 | "SIGTERM handler" daemon prio=10 tid=0x0000000040c51800 nid=0x6359 waiting for monitor entry [0x00002b3919b22000] |
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16 | java.lang.Thread.State: BLOCKED (on object monitor) |
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17 | at java.lang.Shutdown.exit(Shutdown.java:168) |
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18 | - waiting to lock <0x00002b38e20174d8> (a java.lang.Class for java.lang.Shutdown) |
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19 | at java.lang.Terminator$1.handle(Terminator.java:35) |
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20 | at sun.misc.Signal$1.run(Signal.java:195) |
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21 | at java.lang.Thread.run(Thread.java:619) |
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22 | |
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23 | "Thread-2" prio=10 tid=0x000000004103f000 nid=0x59c9 runnable [0x00002b3927b79000] |
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24 | java.lang.Thread.State: RUNNABLE |
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25 | at com.sun.net.ssl.internal.ssl.SSLEngineImpl.wrap(SSLEngineImpl.java:1047) |
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26 | at javax.net.ssl.SSLEngine.wrap(SSLEngine.java:452) |
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27 | at IceSSL.TransceiverI.writeNonBlocking(TransceiverI.java:537) |
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28 | at IceSSL.TransceiverI.write(TransceiverI.java:150) |
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29 | at Ice.ConnectionI.sendMessage(ConnectionI.java:1757) |
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30 | at Ice.ConnectionI.initiateShutdown(ConnectionI.java:1519) |
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31 | at Ice.ConnectionI.setState(ConnectionI.java:1488) |
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32 | at Ice.ConnectionI.setState(ConnectionI.java:1351) |
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33 | at Ice.ConnectionI.destroy(ConnectionI.java:149) |
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34 | - locked <0x00002b38eaafd9f8> (a Ice.ConnectionI) |
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35 | at IceInternal.OutgoingConnectionFactory.destroy(OutgoingConnectionFactory.java:37) |
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36 | - locked <0x00002b38eab50d70> (a IceInternal.OutgoingConnectionFactory) |
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37 | at IceInternal.Instance.destroy(Instance.java:895) |
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38 | at Ice.CommunicatorI.destroy(CommunicatorI.java:17) |
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39 | at omero.client.closeSession(client.java:829) |
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40 | at omero.client.__del__(client.java:431) |
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41 | at omero.client$1.run(client.java:92) |
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42 | |
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43 | "Ice.Timer" prio=10 tid=0x0000000040572000 nid=0x3ec5 in Object.wait() [0x00002b390f53b000] |
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44 | java.lang.Thread.State: WAITING (on object monitor) |
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45 | at java.lang.Object.wait(Native Method) |
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46 | - waiting on <0x00002b38eb927f70> (a IceInternal.Timer) |
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47 | at java.lang.Object.wait(Object.java:485) |
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48 | at IceInternal.Timer.run(Timer.java:177) |
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49 | - locked <0x00002b38eb927f70> (a IceInternal.Timer) |
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50 | |
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51 | "Ice.SelectorThread" prio=10 tid=0x00000000413d8000 nid=0x3ec4 runnable [0x00002b390f339000] |
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52 | java.lang.Thread.State: RUNNABLE |
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53 | at sun.nio.ch.EPollArrayWrapper.epollWait(Native Method) |
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54 | at sun.nio.ch.EPollArrayWrapper.poll(EPollArrayWrapper.java:215) |
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55 | at sun.nio.ch.EPollSelectorImpl.doSelect(EPollSelectorImpl.java:65) |
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56 | at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69) |
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57 | - locked <0x00002b38eb92bf88> (a sun.nio.ch.Util$1) |
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58 | - locked <0x00002b38eb92bfa0> (a java.util.Collections$UnmodifiableSet) |
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59 | - locked <0x00002b38eb92bf10> (a sun.nio.ch.EPollSelectorImpl) |
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60 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80) |
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61 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84) |
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62 | at IceInternal.Selector.select(Selector.java:139) |
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63 | at IceInternal.SelectorThread.run(SelectorThread.java:120) |
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64 | at IceInternal.SelectorThread$HelperThread.run(SelectorThread.java:273) |
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65 | |
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66 | "Ice.ThreadPool.Client-0" prio=10 tid=0x0000000040701000 nid=0x3ec3 runnable [0x00002b390ef35000] |
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67 | java.lang.Thread.State: RUNNABLE |
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68 | at sun.nio.ch.EPollArrayWrapper.epollWait(Native Method) |
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69 | at sun.nio.ch.EPollArrayWrapper.poll(EPollArrayWrapper.java:215) |
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70 | at sun.nio.ch.EPollSelectorImpl.doSelect(EPollSelectorImpl.java:65) |
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71 | at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69) |
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72 | - locked <0x00002b38eb92ba50> (a sun.nio.ch.Util$1) |
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73 | - locked <0x00002b38eb92ba38> (a java.util.Collections$UnmodifiableSet) |
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74 | - locked <0x00002b38eb92b4c8> (a sun.nio.ch.EPollSelectorImpl) |
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75 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80) |
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76 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84) |
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77 | at IceInternal.Selector.select(Selector.java:139) |
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78 | at IceInternal.ThreadPool.run(ThreadPool.java:335) |
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79 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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80 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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81 | |
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82 | "Ice.EndpointHostResolverThread" prio=10 tid=0x00002b391c02c800 nid=0x3ec2 in Object.wait() [0x00002b390f036000] |
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83 | java.lang.Thread.State: WAITING (on object monitor) |
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84 | at java.lang.Object.wait(Native Method) |
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85 | - waiting on <0x00002b38eb936c18> (a IceInternal.EndpointHostResolver) |
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86 | at java.lang.Object.wait(Object.java:485) |
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87 | at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:77) |
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88 | - locked <0x00002b38eb936c18> (a IceInternal.EndpointHostResolver) |
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89 | at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146) |
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90 | |
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91 | "omero.ClientCallback.ThreadPool-4" prio=10 tid=0x00002b391c0a1800 nid=0x3ec1 in Object.wait() [0x00002b390e80b000] |
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92 | java.lang.Thread.State: WAITING (on object monitor) |
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93 | at java.lang.Object.wait(Native Method) |
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94 | - waiting on <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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95 | at java.lang.Object.wait(Object.java:485) |
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96 | at IceInternal.ThreadPool.run(ThreadPool.java:315) |
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97 | - locked <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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98 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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99 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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100 | |
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101 | "omero.ClientCallback.ThreadPool-3" prio=10 tid=0x00002b391c02a800 nid=0x3ec0 in Object.wait() [0x00002b390f238000] |
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102 | java.lang.Thread.State: WAITING (on object monitor) |
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103 | at java.lang.Object.wait(Native Method) |
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104 | - waiting on <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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105 | at java.lang.Object.wait(Object.java:485) |
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106 | at IceInternal.ThreadPool.run(ThreadPool.java:315) |
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107 | - locked <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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108 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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109 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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110 | |
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111 | "omero.ClientCallback.ThreadPool-2" prio=10 tid=0x00002b391c026800 nid=0x3ebf in Object.wait() [0x00002b390ee34000] |
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112 | java.lang.Thread.State: WAITING (on object monitor) |
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113 | at java.lang.Object.wait(Native Method) |
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114 | - waiting on <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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115 | at java.lang.Object.wait(Object.java:485) |
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116 | at IceInternal.ThreadPool.run(ThreadPool.java:315) |
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117 | - locked <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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118 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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119 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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120 | |
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121 | "omero.ClientCallback.ThreadPool-1" prio=10 tid=0x00002b391c084800 nid=0x3ebe in Object.wait() [0x00002b390eb31000] |
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122 | java.lang.Thread.State: WAITING (on object monitor) |
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123 | at java.lang.Object.wait(Native Method) |
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124 | - waiting on <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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125 | at java.lang.Object.wait(Object.java:485) |
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126 | at IceInternal.ThreadPool.run(ThreadPool.java:315) |
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127 | - locked <0x00002b38eb92da88> (a IceInternal.ThreadPool) |
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128 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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129 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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130 | |
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131 | "omero.ClientCallback.ThreadPool-0" prio=10 tid=0x00002b391c09d800 nid=0x3ebd runnable [0x00002b390ed33000] |
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132 | java.lang.Thread.State: RUNNABLE |
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133 | at sun.nio.ch.EPollArrayWrapper.epollWait(Native Method) |
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134 | at sun.nio.ch.EPollArrayWrapper.poll(EPollArrayWrapper.java:215) |
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135 | at sun.nio.ch.EPollSelectorImpl.doSelect(EPollSelectorImpl.java:65) |
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136 | at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69) |
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137 | - locked <0x00002b38eb924df0> (a sun.nio.ch.Util$1) |
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138 | - locked <0x00002b38eb924e08> (a java.util.Collections$UnmodifiableSet) |
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139 | - locked <0x00002b38eb937100> (a sun.nio.ch.EPollSelectorImpl) |
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140 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80) |
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141 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84) |
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142 | at IceInternal.Selector.select(Selector.java:139) |
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143 | at IceInternal.ThreadPool.run(ThreadPool.java:335) |
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144 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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145 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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146 | |
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147 | "TestNGInvoker-testImportSimpleImageMetadataOnly()" prio=10 tid=0x00002b391c02e800 nid=0x3a35 waiting for monitor entry [0x00002b390fe4a000] |
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148 | java.lang.Thread.State: BLOCKED (on object monitor) |
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149 | at IceInternal.OutgoingConnectionFactory.findConnectionByEndpoint(OutgoingConnectionFactory.java:449) |
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150 | - waiting to lock <0x00002b38eab50d70> (a IceInternal.OutgoingConnectionFactory) |
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151 | at IceInternal.OutgoingConnectionFactory.create(OutgoingConnectionFactory.java:265) |
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152 | at IceInternal.RoutableReference.createConnection(RoutableReference.java:848) |
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153 | at IceInternal.RoutableReference$1.setEndpoints(RoutableReference.java:484) |
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154 | at IceInternal.RouterInfo.getClientEndpoints(RouterInfo.java:92) |
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155 | at IceInternal.RoutableReference.getConnection(RoutableReference.java:476) |
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156 | at IceInternal.ConnectRequestHandler.connect(ConnectRequestHandler.java:41) |
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157 | at Ice._ObjectDelM.setup(_ObjectDelM.java:275) |
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158 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:1007) |
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159 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
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160 | - locked <0x00002b38eaafdb40> (a omero.api.MetadataStorePrxHelper) |
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161 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:46) |
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162 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
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163 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
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164 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
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165 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
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166 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
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167 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
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168 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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169 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
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170 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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171 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
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172 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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173 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
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174 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
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175 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
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176 | at integration.AbstractTest.importFile(AbstractTest.java:569) |
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177 | at integration.ImporterTest.testImportSimpleImageMetadataOnly(ImporterTest.java:728) |
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178 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
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179 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
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180 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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181 | at java.lang.reflect.Method.invoke(Method.java:597) |
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182 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
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183 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
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184 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
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185 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
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186 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
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187 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
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188 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
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189 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
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190 | at java.lang.Thread.run(Thread.java:619) |
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191 | |
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192 | "TestNGInvoker-testImportSimpleImage()" prio=10 tid=0x00002b391c08e800 nid=0x38a1 waiting for monitor entry [0x00002b392322f000] |
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193 | java.lang.Thread.State: BLOCKED (on object monitor) |
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194 | at Ice.ObjectPrxHelperBase.__handleExceptionWrapper(ObjectPrxHelperBase.java:872) |
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195 | - waiting to lock <0x00002b38eaafdb40> (a omero.api.MetadataStorePrxHelper) |
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196 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:53) |
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197 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
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198 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
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199 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
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200 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
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201 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
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202 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
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203 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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204 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
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205 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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206 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
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207 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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208 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
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209 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
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210 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
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211 | at integration.AbstractTest.importFile(AbstractTest.java:554) |
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212 | at integration.ImporterTest.testImportSimpleImage(ImporterTest.java:669) |
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213 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
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214 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
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215 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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216 | at java.lang.reflect.Method.invoke(Method.java:597) |
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217 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
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218 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
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219 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
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220 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
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221 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
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222 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
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223 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
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224 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
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225 | at java.lang.Thread.run(Thread.java:619) |
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226 | |
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227 | "TestNGInvoker-testImportPlateWithReagent()" prio=10 tid=0x00002b391c082800 nid=0x37e6 waiting for monitor entry [0x00002b3928a87000] |
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228 | java.lang.Thread.State: BLOCKED (on object monitor) |
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229 | at Ice.ConnectionI.sendRequest(ConnectionI.java:336) |
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230 | - waiting to lock <0x00002b38eaafd9f8> (a Ice.ConnectionI) |
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231 | at IceInternal.ConnectionRequestHandler.sendRequest(ConnectionRequestHandler.java:36) |
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232 | at IceInternal.Outgoing.invoke(Outgoing.java:66) |
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233 | at omero.api._MetadataStoreDelM.createRoot(_MetadataStoreDelM.java:24) |
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234 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:48) |
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235 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
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236 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
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237 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
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238 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
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239 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
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240 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
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241 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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242 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
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243 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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244 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
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245 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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246 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
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247 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
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248 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
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249 | at integration.AbstractTest.importFile(AbstractTest.java:554) |
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250 | at integration.ImporterTest.testImportPlateWithReagent(ImporterTest.java:1195) |
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251 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
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252 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
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253 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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254 | at java.lang.reflect.Method.invoke(Method.java:597) |
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255 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
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256 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
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257 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
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258 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
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259 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
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260 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
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261 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
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262 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
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263 | at java.lang.Thread.run(Thread.java:619) |
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264 | |
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265 | "TestNGInvoker-testImportPlateOnePlateAcquisition()" prio=10 tid=0x00002b391c039000 nid=0x36f1 waiting for monitor entry [0x00002b3927f7c000] |
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266 | java.lang.Thread.State: BLOCKED (on object monitor) |
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267 | at Ice.ObjectPrxHelperBase.__handleExceptionWrapper(ObjectPrxHelperBase.java:872) |
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268 | - waiting to lock <0x00002b38eaafdb40> (a omero.api.MetadataStorePrxHelper) |
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269 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:53) |
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270 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
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271 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
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272 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
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273 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
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274 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
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275 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
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276 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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277 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
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278 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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279 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
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280 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
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281 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
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282 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
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283 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
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284 | at integration.AbstractTest.importFile(AbstractTest.java:554) |
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285 | at integration.ImporterTest.testImportPlateOnePlateAcquisition(ImporterTest.java:1087) |
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286 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
287 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
---|
288 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
289 | at java.lang.reflect.Method.invoke(Method.java:597) |
---|
290 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
---|
291 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
---|
292 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
---|
293 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
---|
294 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
---|
295 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
---|
296 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
---|
297 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
---|
298 | at java.lang.Thread.run(Thread.java:619) |
---|
299 | |
---|
300 | "TestNGInvoker-testImportPlateMultiplePlateAcquisitions()" prio=10 tid=0x00002b391c08d000 nid=0x35b3 waiting for monitor entry [0x00002b390e305000] |
---|
301 | java.lang.Thread.State: BLOCKED (on object monitor) |
---|
302 | at Ice.ObjectPrxHelperBase.__handleExceptionWrapper(ObjectPrxHelperBase.java:872) |
---|
303 | - waiting to lock <0x00002b38eaafdb40> (a omero.api.MetadataStorePrxHelper) |
---|
304 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:53) |
---|
305 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
---|
306 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
---|
307 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
---|
308 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
---|
309 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
---|
310 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
---|
311 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
312 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
---|
313 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
314 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
---|
315 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
316 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
---|
317 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
---|
318 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
---|
319 | at integration.AbstractTest.importFile(AbstractTest.java:554) |
---|
320 | at integration.ImporterTest.testImportPlateMultiplePlateAcquisitions(ImporterTest.java:1131) |
---|
321 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
322 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
---|
323 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
324 | at java.lang.reflect.Method.invoke(Method.java:597) |
---|
325 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
---|
326 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
---|
327 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
---|
328 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
---|
329 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
---|
330 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
---|
331 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
---|
332 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
---|
333 | at java.lang.Thread.run(Thread.java:619) |
---|
334 | |
---|
335 | "TestNGInvoker-testImportPlate()" prio=10 tid=0x00002b391c037000 nid=0x2e77 waiting for monitor entry [0x00002b392dbd8000] |
---|
336 | java.lang.Thread.State: BLOCKED (on object monitor) |
---|
337 | at Ice.ObjectPrxHelperBase.__handleExceptionWrapper(ObjectPrxHelperBase.java:872) |
---|
338 | - waiting to lock <0x00002b38eaafdb40> (a omero.api.MetadataStorePrxHelper) |
---|
339 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:53) |
---|
340 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
---|
341 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
---|
342 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
---|
343 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
---|
344 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
---|
345 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
---|
346 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
347 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
---|
348 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
349 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
---|
350 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
351 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
---|
352 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
---|
353 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
---|
354 | at integration.AbstractTest.importFile(AbstractTest.java:554) |
---|
355 | at integration.ImporterTest.testImportPlate(ImporterTest.java:1054) |
---|
356 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
357 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
---|
358 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
359 | at java.lang.reflect.Method.invoke(Method.java:597) |
---|
360 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
---|
361 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
---|
362 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
---|
363 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
---|
364 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
---|
365 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
---|
366 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
---|
367 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
---|
368 | at java.lang.Thread.run(Thread.java:619) |
---|
369 | |
---|
370 | "TestNGInvoker-testImportImageWithROI()" prio=10 tid=0x00002b391c023800 nid=0x2ce7 waiting for monitor entry [0x00002b3923a37000] |
---|
371 | java.lang.Thread.State: BLOCKED (on object monitor) |
---|
372 | at Ice.ConnectionI.sendRequest(ConnectionI.java:336) |
---|
373 | - waiting to lock <0x00002b38eaafd9f8> (a Ice.ConnectionI) |
---|
374 | at IceInternal.ConnectionRequestHandler.sendRequest(ConnectionRequestHandler.java:36) |
---|
375 | at IceInternal.Outgoing.invoke(Outgoing.java:66) |
---|
376 | at omero.api._MetadataStoreDelM.createRoot(_MetadataStoreDelM.java:24) |
---|
377 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:48) |
---|
378 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
---|
379 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
---|
380 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
---|
381 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
---|
382 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
---|
383 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
---|
384 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
385 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
---|
386 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
387 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
---|
388 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
389 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
---|
390 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
---|
391 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
---|
392 | at integration.AbstractTest.importFile(AbstractTest.java:554) |
---|
393 | at integration.ImporterTest.testImportImageWithROI(ImporterTest.java:1013) |
---|
394 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
395 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
---|
396 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
397 | at java.lang.reflect.Method.invoke(Method.java:597) |
---|
398 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
---|
399 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
---|
400 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
---|
401 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
---|
402 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
---|
403 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
---|
404 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
---|
405 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
---|
406 | at java.lang.Thread.run(Thread.java:619) |
---|
407 | |
---|
408 | "TestNGInvoker-testImportImageWithAcquisitionData()" prio=10 tid=0x00002b391c03d000 nid=0x2b98 in Object.wait() [0x00002b392e0dd000] |
---|
409 | java.lang.Thread.State: WAITING (on object monitor) |
---|
410 | at java.lang.Object.wait(Native Method) |
---|
411 | - waiting on <0x00002b38eaafd9b8> (a IceInternal.Outgoing) |
---|
412 | at java.lang.Object.wait(Object.java:485) |
---|
413 | at IceInternal.Outgoing.invoke(Outgoing.java:109) |
---|
414 | - locked <0x00002b38eaafd9b8> (a IceInternal.Outgoing) |
---|
415 | at omero.api._MetadataStoreDelM.createRoot(_MetadataStoreDelM.java:24) |
---|
416 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:48) |
---|
417 | at omero.api.MetadataStorePrxHelper.createRoot(MetadataStorePrxHelper.java:20) |
---|
418 | at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:935) |
---|
419 | at loci.formats.FormatReader.initFile(FormatReader.java:216) |
---|
420 | at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:215) |
---|
421 | at loci.formats.FormatReader.setId(FormatReader.java:1058) |
---|
422 | at loci.formats.ImageReader.setId(ImageReader.java:650) |
---|
423 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
424 | at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) |
---|
425 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
426 | at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) |
---|
427 | at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) |
---|
428 | at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) |
---|
429 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) |
---|
430 | at integration.AbstractTest.importFile(AbstractTest.java:612) |
---|
431 | at integration.AbstractTest.importFile(AbstractTest.java:554) |
---|
432 | at integration.ImporterTest.testImportImageWithAcquisitionData(ImporterTest.java:820) |
---|
433 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
434 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) |
---|
435 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
436 | at java.lang.reflect.Method.invoke(Method.java:597) |
---|
437 | at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:644) |
---|
438 | at org.testng.internal.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:49) |
---|
439 | at org.testng.internal.InvokeMethodRunnable.run(InvokeMethodRunnable.java:40) |
---|
440 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
---|
441 | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
---|
442 | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
---|
443 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
---|
444 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
---|
445 | at java.lang.Thread.run(Thread.java:619) |
---|
446 | |
---|
447 | "pool-140-thread-1" prio=10 tid=0x00002b391c08b000 nid=0x29c5 waiting for monitor entry [0x00002b3924f4d000] |
---|
448 | java.lang.Thread.State: BLOCKED (on object monitor) |
---|
449 | at IceInternal.OutgoingConnectionFactory.findConnectionByEndpoint(OutgoingConnectionFactory.java:449) |
---|
450 | - waiting to lock <0x00002b38eab50d70> (a IceInternal.OutgoingConnectionFactory) |
---|
451 | at IceInternal.OutgoingConnectionFactory.create(OutgoingConnectionFactory.java:265) |
---|
452 | at IceInternal.RoutableReference.createConnection(RoutableReference.java:848) |
---|
453 | at IceInternal.RoutableReference$1.setEndpoints(RoutableReference.java:484) |
---|
454 | at IceInternal.RouterInfo.getClientEndpoints(RouterInfo.java:92) |
---|
455 | at IceInternal.RoutableReference.getConnection(RoutableReference.java:476) |
---|
456 | at IceInternal.ConnectRequestHandler.connect(ConnectRequestHandler.java:41) |
---|
457 | at Ice._ObjectDelM.setup(_ObjectDelM.java:275) |
---|
458 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:1007) |
---|
459 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
---|
460 | - locked <0x00002b38eab24e98> (a omero.api.ServiceFactoryPrxHelper) |
---|
461 | at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:1646) |
---|
462 | at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:1620) |
---|
463 | at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:610) |
---|
464 | at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:69) |
---|
465 | - locked <0x00002b38eaafdb60> (a ome.formats.OMEROMetadataStoreClient) |
---|
466 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
---|
467 | at java.util.concurrent.FutureTask$Sync.innerRunAndReset(FutureTask.java:317) |
---|
468 | at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:150) |
---|
469 | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$101(ScheduledThreadPoolExecutor.java:98) |
---|
470 | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.runPeriodic(ScheduledThreadPoolExecutor.java:181) |
---|
471 | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:205) |
---|
472 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
---|
473 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
---|
474 | at java.lang.Thread.run(Thread.java:619) |
---|
475 | |
---|
476 | "Ice.Timer" prio=10 tid=0x0000000040bd1800 nid=0x29be in Object.wait() [0x00002b390f137000] |
---|
477 | java.lang.Thread.State: WAITING (on object monitor) |
---|
478 | at java.lang.Object.wait(Native Method) |
---|
479 | - waiting on <0x00002b38eab18e48> (a IceInternal.Timer) |
---|
480 | at java.lang.Object.wait(Object.java:485) |
---|
481 | at IceInternal.Timer.run(Timer.java:177) |
---|
482 | - locked <0x00002b38eab18e48> (a IceInternal.Timer) |
---|
483 | |
---|
484 | "Ice.SelectorThread" prio=10 tid=0x0000000040bdd000 nid=0x29bd runnable [0x00002b390e508000] |
---|
485 | java.lang.Thread.State: RUNNABLE |
---|
486 | at sun.nio.ch.EPollArrayWrapper.epollWait(Native Method) |
---|
487 | at sun.nio.ch.EPollArrayWrapper.poll(EPollArrayWrapper.java:215) |
---|
488 | at sun.nio.ch.EPollSelectorImpl.doSelect(EPollSelectorImpl.java:65) |
---|
489 | at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69) |
---|
490 | - locked <0x00002b38eab6cda8> (a sun.nio.ch.Util$1) |
---|
491 | - locked <0x00002b38eab6cdc0> (a java.util.Collections$UnmodifiableSet) |
---|
492 | - locked <0x00002b38eab6cd30> (a sun.nio.ch.EPollSelectorImpl) |
---|
493 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80) |
---|
494 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84) |
---|
495 | at IceInternal.Selector.select(Selector.java:139) |
---|
496 | at IceInternal.SelectorThread.run(SelectorThread.java:120) |
---|
497 | at IceInternal.SelectorThread$HelperThread.run(SelectorThread.java:273) |
---|
498 | |
---|
499 | "Ice.EndpointHostResolverThread" prio=10 tid=0x00002b391c03b000 nid=0x29bb in Object.wait() [0x00002b391b63d000] |
---|
500 | java.lang.Thread.State: WAITING (on object monitor) |
---|
501 | at java.lang.Object.wait(Native Method) |
---|
502 | - waiting on <0x00002b38eab75bc0> (a IceInternal.EndpointHostResolver) |
---|
503 | at java.lang.Object.wait(Object.java:485) |
---|
504 | at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:77) |
---|
505 | - locked <0x00002b38eab75bc0> (a IceInternal.EndpointHostResolver) |
---|
506 | at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146) |
---|
507 | |
---|
508 | "omero.ClientCallback.ThreadPool-4" prio=10 tid=0x00002b391c0a5000 nid=0x29ba in Object.wait() [0x00002b3923e3c000] |
---|
509 | java.lang.Thread.State: WAITING (on object monitor) |
---|
510 | at java.lang.Object.wait(Native Method) |
---|
511 | - waiting on <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
512 | at java.lang.Object.wait(Object.java:485) |
---|
513 | at IceInternal.ThreadPool.run(ThreadPool.java:315) |
---|
514 | - locked <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
515 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
516 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
517 | |
---|
518 | "omero.ClientCallback.ThreadPool-3" prio=10 tid=0x00002b391c090800 nid=0x29b9 in Object.wait() [0x00002b3920806000] |
---|
519 | java.lang.Thread.State: WAITING (on object monitor) |
---|
520 | at java.lang.Object.wait(Native Method) |
---|
521 | - waiting on <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
522 | at java.lang.Object.wait(Object.java:485) |
---|
523 | at IceInternal.ThreadPool.run(ThreadPool.java:315) |
---|
524 | - locked <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
525 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
526 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
527 | |
---|
528 | "omero.ClientCallback.ThreadPool-2" prio=10 tid=0x00002b391c0a4000 nid=0x29b8 in Object.wait() [0x00002b3923c3a000] |
---|
529 | java.lang.Thread.State: WAITING (on object monitor) |
---|
530 | at java.lang.Object.wait(Native Method) |
---|
531 | - waiting on <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
532 | at java.lang.Object.wait(Object.java:485) |
---|
533 | at IceInternal.ThreadPool.run(ThreadPool.java:315) |
---|
534 | - locked <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
535 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
536 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
537 | |
---|
538 | "omero.ClientCallback.ThreadPool-1" prio=10 tid=0x00002b391c080800 nid=0x29b7 runnable [0x00002b3922c2a000] |
---|
539 | java.lang.Thread.State: RUNNABLE |
---|
540 | at sun.nio.ch.EPollArrayWrapper.epollWait(Native Method) |
---|
541 | at sun.nio.ch.EPollArrayWrapper.poll(EPollArrayWrapper.java:215) |
---|
542 | at sun.nio.ch.EPollSelectorImpl.doSelect(EPollSelectorImpl.java:65) |
---|
543 | at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69) |
---|
544 | - locked <0x00002b38eab54748> (a sun.nio.ch.Util$1) |
---|
545 | - locked <0x00002b38eab54730> (a java.util.Collections$UnmodifiableSet) |
---|
546 | - locked <0x00002b38eab53bf8> (a sun.nio.ch.EPollSelectorImpl) |
---|
547 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80) |
---|
548 | at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84) |
---|
549 | at IceInternal.Selector.select(Selector.java:139) |
---|
550 | at IceInternal.ThreadPool.run(ThreadPool.java:335) |
---|
551 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
552 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
553 | |
---|
554 | "omero.ClientCallback.ThreadPool-0" prio=10 tid=0x00002b391c045800 nid=0x29b6 in Object.wait() [0x00002b3925957000] |
---|
555 | java.lang.Thread.State: WAITING (on object monitor) |
---|
556 | at java.lang.Object.wait(Native Method) |
---|
557 | - waiting on <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
558 | at java.lang.Object.wait(Object.java:485) |
---|
559 | at IceInternal.ThreadPool.run(ThreadPool.java:710) |
---|
560 | - locked <0x00002b38eab53a88> (a IceInternal.ThreadPool) |
---|
561 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
562 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
563 | |
---|
564 | "Java2D Disposer" daemon prio=10 tid=0x0000000040328000 nid=0x6f55 in Object.wait() [0x00002b390f43a000] |
---|
565 | java.lang.Thread.State: WAITING (on object monitor) |
---|
566 | at java.lang.Object.wait(Native Method) |
---|
567 | - waiting on <0x00002b38eab6da18> (a java.lang.ref.ReferenceQueue$Lock) |
---|
568 | at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118) |
---|
569 | - locked <0x00002b38eab6da18> (a java.lang.ref.ReferenceQueue$Lock) |
---|
570 | at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134) |
---|
571 | at sun.java2d.Disposer.run(Disposer.java:125) |
---|
572 | at java.lang.Thread.run(Thread.java:619) |
---|
573 | |
---|
574 | "Low Memory Detector" daemon prio=10 tid=0x00000000401bd000 nid=0x690a runnable [0x0000000000000000] |
---|
575 | java.lang.Thread.State: RUNNABLE |
---|
576 | |
---|
577 | "CompilerThread1" daemon prio=10 tid=0x00000000401ba000 nid=0x6909 waiting on condition [0x0000000000000000] |
---|
578 | java.lang.Thread.State: RUNNABLE |
---|
579 | |
---|
580 | "CompilerThread0" daemon prio=10 tid=0x00000000401b5800 nid=0x6908 waiting on condition [0x0000000000000000] |
---|
581 | java.lang.Thread.State: RUNNABLE |
---|
582 | |
---|
583 | "Signal Dispatcher" daemon prio=10 tid=0x00000000401b3800 nid=0x6907 runnable [0x0000000000000000] |
---|
584 | java.lang.Thread.State: RUNNABLE |
---|
585 | |
---|
586 | "Finalizer" daemon prio=10 tid=0x0000000040197000 nid=0x6906 in Object.wait() [0x00002b390d63c000] |
---|
587 | java.lang.Thread.State: WAITING (on object monitor) |
---|
588 | at java.lang.Object.wait(Native Method) |
---|
589 | - waiting on <0x00002b38e6de45e8> (a java.lang.ref.ReferenceQueue$Lock) |
---|
590 | at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118) |
---|
591 | - locked <0x00002b38e6de45e8> (a java.lang.ref.ReferenceQueue$Lock) |
---|
592 | at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134) |
---|
593 | at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159) |
---|
594 | |
---|
595 | "Reference Handler" daemon prio=10 tid=0x000000004018f800 nid=0x6905 in Object.wait() [0x00002b390d53b000] |
---|
596 | java.lang.Thread.State: WAITING (on object monitor) |
---|
597 | at java.lang.Object.wait(Native Method) |
---|
598 | - waiting on <0x00002b38e6de4620> (a java.lang.ref.Reference$Lock) |
---|
599 | at java.lang.Object.wait(Object.java:485) |
---|
600 | at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116) |
---|
601 | - locked <0x00002b38e6de4620> (a java.lang.ref.Reference$Lock) |
---|
602 | |
---|
603 | "main" prio=10 tid=0x0000000040125000 nid=0x68fb in Object.wait() [0x00002b38de058000] |
---|
604 | java.lang.Thread.State: WAITING (on object monitor) |
---|
605 | at java.lang.Object.wait(Native Method) |
---|
606 | - waiting on <0x00002b38eabfbd98> (a omero.client$1) |
---|
607 | at java.lang.Thread.join(Thread.java:1143) |
---|
608 | - locked <0x00002b38eabfbd98> (a omero.client$1) |
---|
609 | at java.lang.Thread.join(Thread.java:1196) |
---|
610 | at java.lang.ApplicationShutdownHooks.runHooks(ApplicationShutdownHooks.java:79) |
---|
611 | at java.lang.ApplicationShutdownHooks$1.run(ApplicationShutdownHooks.java:24) |
---|
612 | at java.lang.Shutdown.runHooks(Shutdown.java:79) |
---|
613 | at java.lang.Shutdown.sequence(Shutdown.java:123) |
---|
614 | at java.lang.Shutdown.exit(Shutdown.java:168) |
---|
615 | - locked <0x00002b38e20174d8> (a java.lang.Class for java.lang.Shutdown) |
---|
616 | at java.lang.Runtime.exit(Runtime.java:90) |
---|
617 | at java.lang.System.exit(System.java:904) |
---|
618 | at org.testng.TestNG.main(TestNG.java:926) |
---|
619 | |
---|
620 | "VM Thread" prio=10 tid=0x0000000040189000 nid=0x6904 runnable |
---|
621 | |
---|
622 | "GC task thread#0 (ParallelGC)" prio=10 tid=0x000000004012f800 nid=0x68fc runnable |
---|
623 | |
---|
624 | "GC task thread#1 (ParallelGC)" prio=10 tid=0x0000000040131800 nid=0x68fd runnable |
---|
625 | |
---|
626 | "GC task thread#2 (ParallelGC)" prio=10 tid=0x0000000040133000 nid=0x68fe runnable |
---|
627 | |
---|
628 | "GC task thread#3 (ParallelGC)" prio=10 tid=0x0000000040135000 nid=0x68ff runnable |
---|
629 | |
---|
630 | "GC task thread#4 (ParallelGC)" prio=10 tid=0x0000000040137000 nid=0x6900 runnable |
---|
631 | |
---|
632 | "GC task thread#5 (ParallelGC)" prio=10 tid=0x0000000040138800 nid=0x6901 runnable |
---|
633 | |
---|
634 | "GC task thread#6 (ParallelGC)" prio=10 tid=0x000000004013a800 nid=0x6902 runnable |
---|
635 | |
---|
636 | "GC task thread#7 (ParallelGC)" prio=10 tid=0x000000004013c800 nid=0x6903 runnable |
---|
637 | |
---|
638 | "VM Periodic Task Thread" prio=10 tid=0x00002b3910001800 nid=0x690b waiting on condition |
---|
639 | |
---|
640 | JNI global references: 1363 |
---|
641 | |
---|