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Ticket #5549: locktimeout.txt

File locktimeout.txt, 20.8 KB (added by jmoore, 13 years ago)
Line 
1
21166846 ms since start (2011-05-25 11:28:40,984) ** ERROR **
3 [thread: AWT-EventQueue-0][class: org.openmicroscopy.shoola.agents.metadata.RenderingControlLoader] -
4 Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
5Cannot start the Rendering Engine.
6        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:875)
7        at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3134)
8        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:387)
9        at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:90)
10        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
11        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
12        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
13        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
14        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
15        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
16        at java.lang.Thread.run(Thread.java:680)
17Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
18Cannot set RE defaults.
19        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:875)
20        at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1780)
21        at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3128)
22        ... 9 more
23Caused by: omero.LockTimeout
24    serverStackTrace = "ome.conditions.LockTimeout: /OMERO/Pixels/Dir-016/16721_pyramid is locked by others
25                                at ome.io.bioformats.BfPyramidPixelBuffer.initializeReader(BfPyramidPixelBuffer.java:154)
26                                at ome.io.bioformats.BfPyramidPixelBuffer.<init>(BfPyramidPixelBuffer.java:139)
27                                at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:543)
28                                at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:326)
29                                at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:448)
30                                at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:1245)
31                                at ome.services.RenderingBean$13.doWork(RenderingBean.java:1811)
32                                at sun.reflect.GeneratedMethodAccessor234.invoke(Unknown Source)
33                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
34                                at java.lang.reflect.Method.invoke(Method.java:597)
35                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
36                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
37                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
38                                at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439)
39                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
40                                at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
41                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
42                                at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
43                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
44                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
45                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
46                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
47                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
48                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
49                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
50                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
51                                at $Proxy64.doWork(Unknown Source)
52                                at ome.services.util.Executor$Impl.execute(Executor.java:369)
53                                at ome.services.RenderingBean._resetDefaults(RenderingBean.java:1808)
54                                at ome.services.RenderingBean.resetDefaults(RenderingBean.java:659)
55                                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
56                                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
57                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
58                                at java.lang.reflect.Method.invoke(Method.java:597)
59                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
60                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
61                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
62                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
63                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
64                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
65                                at $Proxy82.resetDefaults(Unknown Source)
66                                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
67                                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
68                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
69                                at java.lang.reflect.Method.invoke(Method.java:597)
70                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
71                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
72                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
73                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
74                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
75                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
76                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
77                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
78                                at $Proxy82.resetDefaults(Unknown Source)
79                                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
80                                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
81                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
82                                at java.lang.reflect.Method.invoke(Method.java:597)
83                                at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
84                                at ome.services.throttling.Callback.run(Callback.java:56)
85                                at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
86                                at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136)
87                                at ome.services.blitz.impl.RenderingEngineI.resetDefaults_async(RenderingEngineI.java:376)
88                                at omero.api._RenderingEngineTie.resetDefaults_async(_RenderingEngineTie.java:323)
89                                at omero.api._RenderingEngineDisp.___resetDefaults(_RenderingEngineDisp.java:1326)
90                                at omero.api._RenderingEngineDisp.__dispatch(_RenderingEngineDisp.java:1702)
91                                at IceInternal.Incoming.invoke(Incoming.java:159)
92                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
93                                at Ice.ConnectionI.message(ConnectionI.java:972)
94                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
95                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
96                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
97                        "
98    serverExceptionClass = "ome.conditions.LockTimeout"
99    message = "/OMERO/Pixels/Dir-016/16721_pyramid is locked by others"
100    backOff = 15000
101    seconds = 0
102        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
103        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
104        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
105        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
106        at java.lang.Class.newInstance0(Class.java:355)
107        at java.lang.Class.newInstance(Class.java:308)
108        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
109        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
110        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
111        at omero.api._RenderingEngineDelM.resetDefaults(_RenderingEngineDelM.java:1848)
112        at omero.api.RenderingEnginePrxHelper.resetDefaults(RenderingEnginePrxHelper.java:2570)
113        at omero.api.RenderingEnginePrxHelper.resetDefaults(RenderingEnginePrxHelper.java:2542)
114        at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1775)
115        ... 10 more
116Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
117Cannot start the Rendering Engine.
118        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:875)
119        at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3134)
120        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:387)
121        at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:90)
122        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
123        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
124        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
125        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
126        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
127        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
128        at java.lang.Thread.run(Thread.java:680)
129Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
130Cannot set RE defaults.
131        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:875)
132        at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1780)
133        at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3128)
134        ... 9 more
135Caused by: omero.LockTimeout
136    serverStackTrace = "ome.conditions.LockTimeout: /OMERO/Pixels/Dir-016/16721_pyramid is locked by others
137                                at ome.io.bioformats.BfPyramidPixelBuffer.initializeReader(BfPyramidPixelBuffer.java:154)
138                                at ome.io.bioformats.BfPyramidPixelBuffer.<init>(BfPyramidPixelBuffer.java:139)
139                                at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:543)
140                                at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:326)
141                                at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:448)
142                                at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:1245)
143                                at ome.services.RenderingBean$13.doWork(RenderingBean.java:1811)
144                                at sun.reflect.GeneratedMethodAccessor234.invoke(Unknown Source)
145                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
146                                at java.lang.reflect.Method.invoke(Method.java:597)
147                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
148                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
149                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
150                                at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439)
151                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
152                                at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
153                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
154                                at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
155                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
156                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
157                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
158                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
159                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
160                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
161                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
162                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
163                                at $Proxy64.doWork(Unknown Source)
164                                at ome.services.util.Executor$Impl.execute(Executor.java:369)
165                                at ome.services.RenderingBean._resetDefaults(RenderingBean.java:1808)
166                                at ome.services.RenderingBean.resetDefaults(RenderingBean.java:659)
167                                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
168                                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
169                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
170                                at java.lang.reflect.Method.invoke(Method.java:597)
171                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
172                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
173                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
174                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
175                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
176                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
177                                at $Proxy82.resetDefaults(Unknown Source)
178                                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
179                                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
180                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
181                                at java.lang.reflect.Method.invoke(Method.java:597)
182                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
183                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
184                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
185                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
186                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
187                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
188                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
189                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
190                                at $Proxy82.resetDefaults(Unknown Source)
191                                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
192                                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
193                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
194                                at java.lang.reflect.Method.invoke(Method.java:597)
195                                at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
196                                at ome.services.throttling.Callback.run(Callback.java:56)
197                                at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
198                                at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136)
199                                at ome.services.blitz.impl.RenderingEngineI.resetDefaults_async(RenderingEngineI.java:376)
200                                at omero.api._RenderingEngineTie.resetDefaults_async(_RenderingEngineTie.java:323)
201                                at omero.api._RenderingEngineDisp.___resetDefaults(_RenderingEngineDisp.java:1326)
202                                at omero.api._RenderingEngineDisp.__dispatch(_RenderingEngineDisp.java:1702)
203                                at IceInternal.Incoming.invoke(Incoming.java:159)
204                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
205                                at Ice.ConnectionI.message(ConnectionI.java:972)
206                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
207                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
208                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
209                        "
210    serverExceptionClass = "ome.conditions.LockTimeout"
211    message = "/OMERO/Pixels/Dir-016/16721_pyramid is locked by others"
212    backOff = 15000
213    seconds = 0
214        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
215        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
216        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
217        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
218        at java.lang.Class.newInstance0(Class.java:355)
219        at java.lang.Class.newInstance(Class.java:308)
220        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
221        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
222        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
223        at omero.api._RenderingEngineDelM.resetDefaults(_RenderingEngineDelM.java:1848)
224        at omero.api.RenderingEnginePrxHelper.resetDefaults(RenderingEnginePrxHelper.java:2570)
225        at omero.api.RenderingEnginePrxHelper.resetDefaults(RenderingEnginePrxHelper.java:2542)
226        at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1775)
227        ... 10 more
228Exception in thread "AWT-EventQueue-0"

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