Ticket #8530: omeroinsight log

File omeroinsight log, 26.8 KB (added by saloynton, 7 years ago)

Omero insight log of screenshotOne

Line 
12012-05-17 17:46:38,657 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk
2User Name: user-6 -- Password: ***
3
42012-05-17 17:54:35,077 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) OMERO Version: 4.3.3-2500-4419873-ice33-b65
52012-05-17 17:54:35,093 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
62012-05-17 17:59:47,494 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWDIRECTORY
72012-05-17 17:59:47,643 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWATTDIR
82012-05-17 18:07:34,463 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-17) Unknown Correction value 'null' will be stored as "Other"
92012-05-17 18:07:34,812 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) File format: Zeiss CZI
102012-05-17 18:07:34,812 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Base reader: loci.formats.in.ZeissCZIReader
112012-05-17 18:07:34,812 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Metadata only import? false
122012-05-17 18:07:34,812 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Archiving enabled? false
132012-05-17 18:07:34,812 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Container metadata only import? false
142012-05-17 18:07:34,813 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Reader is not of HCS domain, use metafile: true
152012-05-17 18:07:34,982 DEBUG [              omero.util.TempFileManager] ( Thread-17) Chose global tmpdir:  /Users/scott
162012-05-17 18:07:35,036 DEBUG [              omero.util.TempFileManager] ( Thread-17) Added file /Users/scott/omero/tmp/omero_scott/50260@omx-mbp-23554.local/ORIGINAL_METADATA_TXT8817398686017690169e82ca171-6944-43c1-b1ff-755781c45f6d
172012-05-17 18:07:35,139 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-17) Unknown target class for LSID: Image:0
182012-05-17 18:15:37,196 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) OMERO Version: 4.3.3-2500-4419873-ice33-b65
192012-05-17 18:15:37,219 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
202012-05-17 18:17:25,251 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWDIRECTORY
212012-05-17 18:17:25,271 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWATTDIR
222012-05-17 18:18:20,392 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-17) Unknown Correction value 'null' will be stored as "Other"
232012-05-17 18:18:20,491 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) File format: Zeiss CZI
242012-05-17 18:18:20,492 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Base reader: loci.formats.in.ZeissCZIReader
252012-05-17 18:18:20,492 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Metadata only import? false
262012-05-17 18:18:20,492 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Archiving enabled? false
272012-05-17 18:18:20,492 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Container metadata only import? false
282012-05-17 18:18:20,492 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Reader is not of HCS domain, use metafile: true
292012-05-17 18:18:20,522 DEBUG [              omero.util.TempFileManager] ( Thread-17) Added file /Users/scott/omero/tmp/omero_scott/50260@omx-mbp-23554.local/ORIGINAL_METADATA_TXT9222293235180292734568e749a-f074-49da-8e1f-6dba230dc1f0
302012-05-17 18:18:20,527 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-17) Unknown target class for LSID: Image:0
312012-05-17 18:19:30,549 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) OMERO Version: 4.3.3-2500-4419873-ice33-b65
322012-05-17 18:19:30,576 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
332012-05-17 18:20:25,799 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWDIRECTORY
342012-05-17 18:20:25,824 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWATTDIR
352012-05-17 18:20:27,891 WARN  [enums.handlers.MicroscopeTypeEnumHandler] ( Thread-17) Unknown MicroscopeType value 'null' will be stored as "Other"
362012-05-17 18:20:27,913 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-17) Unknown Correction value 'null' will be stored as "Other"
372012-05-17 18:20:27,914 WARN  [              loci.formats.FormatHandler] ( Thread-17) Expected positive value for PhysicalSize; got 0.0
382012-05-17 18:20:27,979 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) File format: Zeiss CZI
392012-05-17 18:20:27,979 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Base reader: loci.formats.in.ZeissCZIReader
402012-05-17 18:20:27,979 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Metadata only import? false
412012-05-17 18:20:27,979 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Archiving enabled? false
422012-05-17 18:20:27,979 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Container metadata only import? false
432012-05-17 18:20:27,979 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Reader is not of HCS domain, use metafile: true
442012-05-17 18:20:27,995 DEBUG [              omero.util.TempFileManager] ( Thread-17) Added file /Users/scott/omero/tmp/omero_scott/50260@omx-mbp-23554.local/ORIGINAL_METADATA_TXT6649484781794145205e62ba83c-634b-49cf-b724-eb2e143d1be3
452012-05-17 18:20:27,997 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-17) Unknown target class for LSID: Image:0
462012-05-17 18:20:31,845 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) OMERO Version: 4.3.3-2500-4419873-ice33-b65
472012-05-17 18:20:31,845 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
482012-05-17 18:22:03,397 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWDIRECTORY
492012-05-17 18:22:03,462 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWATTDIR
502012-05-17 18:22:12,146 WARN  [enums.handlers.MicroscopeTypeEnumHandler] ( Thread-17) Unknown MicroscopeType value 'null' will be stored as "Other"
512012-05-17 18:22:12,214 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-17) Unknown Correction value 'null' will be stored as "Other"
522012-05-17 18:22:12,215 WARN  [              loci.formats.FormatHandler] ( Thread-17) Expected positive value for PhysicalSize; got 0.0
532012-05-17 18:22:12,251 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) File format: Zeiss CZI
542012-05-17 18:22:12,251 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Base reader: loci.formats.in.ZeissCZIReader
552012-05-17 18:22:12,251 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Metadata only import? false
562012-05-17 18:22:12,251 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Archiving enabled? false
572012-05-17 18:22:12,251 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Container metadata only import? false
582012-05-17 18:22:12,251 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Reader is not of HCS domain, use metafile: true
592012-05-17 18:22:12,333 DEBUG [              omero.util.TempFileManager] ( Thread-17) Added file /Users/scott/omero/tmp/omero_scott/50260@omx-mbp-23554.local/ORIGINAL_METADATA_TXT7405764417182177296e3a48e77-8649-4d08-9c64-49d18e4ed907
602012-05-17 18:22:12,358 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-17) Unknown target class for LSID: Image:0
612012-05-17 18:22:23,800 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) OMERO Version: 4.3.3-2500-4419873-ice33-b65
622012-05-17 18:22:23,874 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
632012-05-17 18:23:58,831 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: DELETED
642012-05-17 18:25:05,071 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: DELETED
652012-05-17 18:25:06,210 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWDIRECTORY
662012-05-17 18:25:06,211 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWATTDIR
672012-05-17 18:29:20,116 WARN  [l.enums.handlers.DetectorTypeEnumHandler] ( Thread-17) Unknown DetectorType value 'null' will be stored as "Other"
682012-05-17 18:29:20,139 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-17) Unknown Correction value 'null' will be stored as "Other"
692012-05-17 18:29:20,425 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-17) Unknown Binning value '1,1' will be stored as "Other"
702012-05-17 18:29:20,430 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-17) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
712012-05-17 18:29:20,431 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-17) Unknown Binning value '1,1' will be stored as "Other"
722012-05-17 18:29:20,431 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-17) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
732012-05-17 18:29:20,440 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) File format: Zeiss CZI
742012-05-17 18:29:20,440 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Base reader: loci.formats.in.ZeissCZIReader
752012-05-17 18:29:20,440 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Metadata only import? false
762012-05-17 18:29:20,440 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Archiving enabled? false
772012-05-17 18:29:20,441 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Container metadata only import? false
782012-05-17 18:29:20,448 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Reader is not of HCS domain, use metafile: true
792012-05-17 18:29:20,488 DEBUG [              omero.util.TempFileManager] ( Thread-17) Added file /Users/scott/omero/tmp/omero_scott/50260@omx-mbp-23554.local/ORIGINAL_METADATA_TXT3672658794527491120e1abd67e-25a0-4838-a2f9-4372397148df
802012-05-17 18:29:20,504 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-17) Unknown target class for LSID: Image:0
812012-05-17 18:43:41,082 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) OMERO Version: 4.3.3-2500-4419873-ice33-b65
822012-05-17 18:43:41,092 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
832012-05-17 18:46:18,652 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWDIRECTORY
842012-05-17 18:46:18,680 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWATTDIR
852012-05-17 18:48:10,251 INFO  [       ome.formats.importer.ImportConfig] ( Thread-50) OMERO Version: 4.3.3-2500-4419873-ice33-b65
862012-05-17 18:48:10,292 INFO  [       ome.formats.importer.ImportConfig] ( Thread-50) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
872012-05-17 18:48:27,065 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 3
882012-05-17 18:49:48,864 WARN  [l.enums.handlers.DetectorTypeEnumHandler] ( Thread-17) Unknown DetectorType value 'null' will be stored as "Other"
892012-05-17 18:49:48,918 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-17) Unknown Correction value 'null' will be stored as "Other"
902012-05-17 18:49:49,058 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-17) Unknown Binning value '1,1' will be stored as "Other"
912012-05-17 18:49:49,063 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-17) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
922012-05-17 18:49:49,063 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-17) Unknown Binning value '1,1' will be stored as "Other"
932012-05-17 18:49:49,063 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-17) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
942012-05-17 18:49:49,064 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) File format: Zeiss CZI
952012-05-17 18:49:49,064 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Base reader: loci.formats.in.ZeissCZIReader
962012-05-17 18:49:49,064 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Metadata only import? false
972012-05-17 18:49:49,064 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Archiving enabled? false
982012-05-17 18:49:49,064 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Container metadata only import? false
992012-05-17 18:49:49,064 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Reader is not of HCS domain, use metafile: true
1002012-05-17 18:49:49,065 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-17) Unknown target class for LSID: Image:0
1012012-05-17 18:52:20,783 INFO  [       ome.formats.importer.ImportConfig] ( Thread-90) OMERO Version: 4.3.3-2500-4419873-ice33-b65
1022012-05-17 18:52:20,840 INFO  [       ome.formats.importer.ImportConfig] ( Thread-90) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
1032012-05-17 18:53:29,998 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-90) Exception closing "c877210c-bc0c-4eb9-87fb-069c88d466aa/86:24:41:e3:70faf547:1375520addb:-7441omero.api.RawPixelsStore" -t:tcp -h 134.36.65.227 -p 44505
104omero.InternalException
105    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.springframework.transaction.TransactionSystemException):
106                        Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed
107                                at org.springframework.jdbc.datasource.DataSourceTransactionManager.doRollback(DataSourceTransactionManager.java:286)
108                                at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:845)
109                                at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:822)
110                                at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:430)
111                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:112)
112                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
113                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:236)
114                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
115                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
116                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
117                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
118                                at $Proxy95.close(Unknown Source)
119                                at sun.reflect.GeneratedMethodAccessor744.invoke(Unknown Source)
120                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
121                                at java.lang.reflect.Method.invoke(Method.java:597)
122                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
123                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
124                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
125                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98)
126                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
127                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
128                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
129                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
130                                at $Proxy95.close(Unknown Source)
131                                at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:228)
132                                at sun.reflect.GeneratedMethodAccessor855.invoke(Unknown Source)
133                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
134                                at java.lang.reflect.Method.invoke(Method.java:597)
135                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
136                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
137                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
138                                at omero.cmd.CallContext.invoke(CallContext.java:59)
139                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
140                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
141                                at $Proxy96.close_async(Unknown Source)
142                                at omero.api._RawPixelsStoreTie.close_async(_RawPixelsStoreTie.java:330)
143                                at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142)
144                                at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1157)
145                                at IceInternal.Incoming.invoke(Incoming.java:159)
146                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
147                                at Ice.ConnectionI.message(ConnectionI.java:972)
148                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
149                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
150                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
151                        "
152    serverExceptionClass = "ome.conditions.InternalException"
153    message = " Wrapped Exception: (org.springframework.transaction.TransactionSystemException):
154               Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed"
155        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
156        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
157        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
158        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
159        at java.lang.Class.newInstance0(Class.java:355)
160        at java.lang.Class.newInstance(Class.java:308)
161        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
162        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
163        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
164        at omero.api._RawPixelsStoreDelM.close(_RawPixelsStoreDelM.java:1901)
165        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2642)
166        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2614)
167        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:913)
168        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:937)
169        at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:399)
170        at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:1044)
171        at loci.formats.FormatReader.initFile(FormatReader.java:219)
172        at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:302)
173        at loci.formats.FormatReader.setId(FormatReader.java:1091)
174        at loci.formats.ImageReader.setId(ImageReader.java:682)
175        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
176        at loci.formats.ChannelFiller.setId(ChannelFiller.java:250)
177        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
178        at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:261)
179        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
180        at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:310)
181        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:486)
182        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6245)
183        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1246)
184        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
185        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
186        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:113)
187        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
188        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
189        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
190        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
191        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
192        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
193        at java.lang.Thread.run(Thread.java:680)
1942012-05-17 18:53:55,982 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) OMERO Version: 4.3.3-2500-4419873-ice33-b65
1952012-05-17 18:53:56,001 INFO  [       ome.formats.importer.ImportConfig] ( Thread-17) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
1962012-05-17 18:57:10,792 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWDIRECTORY
1972012-05-17 18:57:11,189 INFO  [              loci.formats.FormatHandler] ( Thread-17) Unknown segment type: ZISRAWATTDIR
1982012-05-17 19:01:02,398 WARN  [l.enums.handlers.DetectorTypeEnumHandler] ( Thread-17) Unknown DetectorType value 'null' will be stored as "Other"
1992012-05-17 19:01:02,434 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-17) Unknown Correction value 'null' will be stored as "Other"
2002012-05-17 19:01:02,488 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-17) Unknown Binning value '1,1' will be stored as "Other"
2012012-05-17 19:01:02,493 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-17) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
2022012-05-17 19:01:02,493 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-17) Unknown Binning value '1,1' will be stored as "Other"
2032012-05-17 19:01:02,493 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-17) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
2042012-05-17 19:01:02,494 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) File format: Zeiss CZI
2052012-05-17 19:01:02,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Base reader: loci.formats.in.ZeissCZIReader
2062012-05-17 19:01:02,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Metadata only import? false
2072012-05-17 19:01:02,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Archiving enabled? false
2082012-05-17 19:01:02,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Container metadata only import? false
2092012-05-17 19:01:02,519 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-17) Reader is not of HCS domain, use metafile: true
2102012-05-17 19:01:02,536 DEBUG [              omero.util.TempFileManager] ( Thread-17) Added file /Users/scott/omero/tmp/omero_scott/50260@omx-mbp-23554.local/ORIGINAL_METADATA_TXT7479034512658088249ad4fbbfc-081f-4dce-9063-3fa8190b8001
2112012-05-17 19:01:02,552 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-17) Unknown target class for LSID: Image:0
2122012-05-17 19:04:29,698 INFO  [              loci.formats.FormatHandler] ( Thread-50) Unknown segment type: ZISRAWDIRECTORY
2132012-05-17 19:04:30,101 INFO  [              loci.formats.FormatHandler] ( Thread-50) Unknown segment type: ZISRAWATTDIR
2142012-05-17 19:09:12,789 INFO  [              loci.formats.FormatHandler] ( Thread-90) Unknown segment type: ZISRAWDIRECTORY
2152012-05-17 19:09:13,125 INFO  [              loci.formats.FormatHandler] ( Thread-90) Unknown segment type: ZISRAWATTDIR
2162012-05-17 19:13:02,069 WARN  [del.enums.handlers.CorrectionEnumHandler] ( Thread-50) Unknown Correction value 'null' will be stored as "Other"
2172012-05-17 19:13:02,131 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-50) File format: Zeiss CZI
2182012-05-17 19:13:02,132 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-50) Base reader: loci.formats.in.ZeissCZIReader
2192012-05-17 19:13:02,132 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-50) Metadata only import? false
2202012-05-17 19:13:02,132 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-50) Archiving enabled? false
2212012-05-17 19:13:02,132 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-50) Container metadata only import? false
2222012-05-17 19:13:02,132 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-50) Reader is not of HCS domain, use metafile: true
2232012-05-17 19:13:02,140 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-50) Unknown target class for LSID: Image:0
2242012-05-17 19:13:02,846 INFO  [       ome.formats.importer.ImportConfig] ( Thread-50) OMERO Version: 4.3.3-2500-4419873-ice33-b65
2252012-05-17 19:13:02,846 INFO  [       ome.formats.importer.ImportConfig] ( Thread-50) Bioformats version: 4.4-DEV revision: 5df2832 date: 15 May 2012
2262012-05-17 19:13:41,858 DEBUG [              omero.util.TempFileManager] ( Thread-18) Removing tree: /Users/scott/omero/tmp/omero_scott/50260@omx-mbp-23554.local
2272012-05-18 09:11:11,053 WARN  [                 ome.system.UpgradeCheck] (nitializer) UPGRADE AVAILABLE:Please upgrade to Beta-4.3.4 See http://trac.openmicroscopy.org.uk/omero for the latest version
2282012-05-18 09:11:12,215 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 532545536
2292012-05-18 09:11:12,298 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel
2302012-05-18 09:11:30,190 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.3.3
231Client version: 4.3.3-2500-4419873-ice33-b65
232os_name: Mac OS X
233os_arch: x86_64
234java_version: 1.6.0_31
235os_version: 10.6.8

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