Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.

Ticket #9594: omeroinsight.log

File omeroinsight.log, 44.8 KB (added by rkferguson, 12 years ago)
Line 
12012-09-12 10:29:54,716 WARN  [                 ome.system.UpgradeCheck] (nitializer) UPGRADE AVAILABLE:Please upgrade to 4.4.3 See http://trac.openmicroscopy.org.uk/omero for the latest version
22012-09-12 10:29:54,716 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1037959168
32012-09-12 10:29:54,732 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.sun.java.swing.plaf.windows.WindowsLookAndFeel
42012-09-12 10:30:04,791 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.4.1
5Client version: 4.4.1-486-b319a8c-ice33-b3078
6os_name: Windows 7
7os_arch: x86
8java_version: 1.6.0_33
9os_version: 6.1
10
112012-09-12 10:30:05,182 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk
12User Name: user-8 -- Password: ***
13
142012-09-12 10:36:11,197 FATAL [icroscopy.shoola.env.AbnormalExitHandler] (entQueue-0) Abnormal termination due to an uncaught exception.
15java.lang.InternalError: couldn't create component peer
16        at sun.awt.windows.WComponentPeer.checkCreation(Unknown Source)
17        at sun.awt.windows.WComponentPeer.<init>(Unknown Source)
18        at sun.awt.windows.WCanvasPeer.<init>(Unknown Source)
19        at sun.awt.windows.WPanelPeer.<init>(Unknown Source)
20        at sun.awt.windows.WWindowPeer.<init>(Unknown Source)
21        at sun.awt.windows.WFramePeer.<init>(Unknown Source)
22        at sun.awt.windows.WToolkit.createFrame(Unknown Source)
23        at java.awt.Frame.addNotify(Unknown Source)
24        at java.awt.Window.pack(Unknown Source)
25        at org.openmicroscopy.shoola.util.ui.OptionsDialog.initialize(OptionsDialog.java:251)
26        at org.openmicroscopy.shoola.util.ui.OptionsDialog.<init>(OptionsDialog.java:269)
27        at org.openmicroscopy.shoola.util.ui.MessageBox.<init>(MessageBox.java:159)
28        at org.openmicroscopy.shoola.env.ui.CheckoutBox.<init>(CheckoutBox.java:175)
29        at org.openmicroscopy.shoola.env.ui.TaskBarManager.doExit(TaskBarManager.java:600)
30        at org.openmicroscopy.shoola.env.ui.TaskBarManager.eventFired(TaskBarManager.java:1041)
31        at org.openmicroscopy.shoola.env.event.EventBusImpl.dispatch(EventBusImpl.java:91)
32        at org.openmicroscopy.shoola.env.event.EventBusImpl.post(EventBusImpl.java:222)
33        at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerComponent.closeWindow(TreeViewerComponent.java:997)
34        at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerControl$2.windowClosing(TreeViewerControl.java:623)
35        at java.awt.AWTEventMulticaster.windowClosing(Unknown Source)
36        at java.awt.Window.processWindowEvent(Unknown Source)
37        at javax.swing.JFrame.processWindowEvent(Unknown Source)
38        at java.awt.Window.processEvent(Unknown Source)
39        at java.awt.Component.dispatchEventImpl(Unknown Source)
40        at java.awt.Container.dispatchEventImpl(Unknown Source)
41        at java.awt.Window.dispatchEventImpl(Unknown Source)
42        at java.awt.Component.dispatchEvent(Unknown Source)
43        at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
44        at java.awt.EventQueue.access$000(Unknown Source)
45        at java.awt.EventQueue$1.run(Unknown Source)
46        at java.awt.EventQueue$1.run(Unknown Source)
47        at java.security.AccessController.doPrivileged(Native Method)
48        at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
49        at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
50        at java.awt.EventQueue$2.run(Unknown Source)
51        at java.awt.EventQueue$2.run(Unknown Source)
52        at java.security.AccessController.doPrivileged(Native Method)
53        at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
54        at java.awt.EventQueue.dispatchEvent(Unknown Source)
55        at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
56        at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
57        at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
58        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
59        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
60        at java.awt.EventDispatchThread.run(Unknown Source)
61Abnormal termination due to an uncaught exception.
62java.lang.InternalError: couldn't create component peer
63        at sun.awt.windows.WComponentPeer.checkCreation(Unknown Source)
64        at sun.awt.windows.WComponentPeer.<init>(Unknown Source)
65        at sun.awt.windows.WCanvasPeer.<init>(Unknown Source)
66        at sun.awt.windows.WPanelPeer.<init>(Unknown Source)
67        at sun.awt.windows.WWindowPeer.<init>(Unknown Source)
68        at sun.awt.windows.WFramePeer.<init>(Unknown Source)
69        at sun.awt.windows.WToolkit.createFrame(Unknown Source)
70        at java.awt.Frame.addNotify(Unknown Source)
71        at java.awt.Window.pack(Unknown Source)
72        at org.openmicroscopy.shoola.util.ui.OptionsDialog.initialize(OptionsDialog.java:251)
73        at org.openmicroscopy.shoola.util.ui.OptionsDialog.<init>(OptionsDialog.java:269)
74        at org.openmicroscopy.shoola.util.ui.MessageBox.<init>(MessageBox.java:159)
75        at org.openmicroscopy.shoola.env.ui.CheckoutBox.<init>(CheckoutBox.java:175)
76        at org.openmicroscopy.shoola.env.ui.TaskBarManager.doExit(TaskBarManager.java:600)
77        at org.openmicroscopy.shoola.env.ui.TaskBarManager.eventFired(TaskBarManager.java:1041)
78        at org.openmicroscopy.shoola.env.event.EventBusImpl.dispatch(EventBusImpl.java:91)
79        at org.openmicroscopy.shoola.env.event.EventBusImpl.post(EventBusImpl.java:222)
80        at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerComponent.closeWindow(TreeViewerComponent.java:997)
81        at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerControl$2.windowClosing(TreeViewerControl.java:623)
82        at java.awt.AWTEventMulticaster.windowClosing(Unknown Source)
83        at java.awt.Window.processWindowEvent(Unknown Source)
84        at javax.swing.JFrame.processWindowEvent(Unknown Source)
85        at java.awt.Window.processEvent(Unknown Source)
86        at java.awt.Component.dispatchEventImpl(Unknown Source)
87        at java.awt.Container.dispatchEventImpl(Unknown Source)
88        at java.awt.Window.dispatchEventImpl(Unknown Source)
89        at java.awt.Component.dispatchEvent(Unknown Source)
90        at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
91        at java.awt.EventQueue.access$000(Unknown Source)
92        at java.awt.EventQueue$1.run(Unknown Source)
93        at java.awt.EventQueue$1.run(Unknown Source)
94        at java.security.AccessController.doPrivileged(Native Method)
95        at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
96        at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
97        at java.awt.EventQueue$2.run(Unknown Source)
98        at java.awt.EventQueue$2.run(Unknown Source)
99        at java.security.AccessController.doPrivileged(Native Method)
100        at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
101        at java.awt.EventQueue.dispatchEvent(Unknown Source)
102        at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
103        at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
104        at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
105        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
106        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
107        at java.awt.EventDispatchThread.run(Unknown Source)
108Exception in thread "AWT-EventQueue-0"
109
1102012-09-12 10:37:03,397 WARN  [                 ome.system.UpgradeCheck] (nitializer) UPGRADE AVAILABLE:Please upgrade to 4.4.3 See http://trac.openmicroscopy.org.uk/omero for the latest version
1112012-09-12 10:37:03,710 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1060372480
1122012-09-12 10:37:03,761 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel
1132012-09-12 10:37:35,279 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.4.1
114Client version: 4.4.1-486-b319a8c-ice33-b3078
115os_name: Mac OS X
116os_arch: x86_64
117java_version: 1.6.0_35
118os_version: 10.6.8
119
1202012-09-12 10:37:35,844 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: bp.openmicroscopy.org.uk
121User Name: user-3 -- Password: ***
122
1232012-09-12 10:39:59,166 WARN  [                 ome.system.UpgradeCheck] (nitializer) UPGRADE AVAILABLE:Please upgrade to 4.4.3 See http://trac.openmicroscopy.org.uk/omero for the latest version
1242012-09-12 10:39:59,181 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1037959168
1252012-09-12 10:39:59,181 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.sun.java.swing.plaf.windows.WindowsLookAndFeel
1262012-09-12 10:40:07,978 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.4.1
127Client version: 4.4.1-486-b319a8c-ice33-b3078
128os_name: Windows 7
129os_arch: x86
130java_version: 1.6.0_35
131os_version: 6.1
132
1332012-09-12 10:40:08,353 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk
134User Name: user-8 -- Password: ***
135
1362012-09-12 10:43:09,025 INFO  [       ome.formats.importer.ImportConfig] ( Thread-14) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
1372012-09-12 10:43:09,025 INFO  [       ome.formats.importer.ImportConfig] ( Thread-14) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
1382012-09-12 10:43:38,369 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-14) File format: PICT
1392012-09-12 10:43:38,369 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-14) Base reader: loci.formats.in.PictReader
1402012-09-12 10:43:38,369 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-14) Metadata only import? false
1412012-09-12 10:43:38,369 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-14) Archiving enabled? false
1422012-09-12 10:43:38,369 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-14) Container metadata only import? false
1432012-09-12 10:43:38,369 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-14) Reader is not of HCS domain, use metafile: true
1442012-09-12 10:43:38,369 DEBUG [              omero.util.TempFileManager] ( Thread-14) Chose global tmpdir:  \\psf\Home
1452012-09-12 10:43:38,369 DEBUG [              omero.util.TempFileManager] ( Thread-14) Added file \\psf\Home\omero\tmp\omero_gus\3792@gus-PC\ORIGINAL_METADATA_TXT8983393559837078388d268a388-a262-41b0-8c08-cd81188bf197
1462012-09-12 10:43:38,400 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-14) Unknown target class for LSID: Image:0
1472012-09-12 10:46:27,697 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0
1482012-09-12 10:55:26,884 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
1492012-09-12 10:55:26,884 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
1502012-09-12 10:55:36,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) File format: Animated PNG
1512012-09-12 10:55:36,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Base reader: loci.formats.in.APNGReader
1522012-09-12 10:55:36,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Metadata only import? false
1532012-09-12 10:55:36,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Archiving enabled? false
1542012-09-12 10:55:36,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Container metadata only import? false
1552012-09-12 10:55:36,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Reader is not of HCS domain, use metafile: true
1562012-09-12 10:55:36,603 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-61) Unknown target class for LSID: Image:0
1572012-09-12 10:56:04,666 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
1582012-09-12 10:56:04,666 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
1592012-09-12 10:56:13,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) File format: POV-Ray
1602012-09-12 10:56:13,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Base reader: loci.formats.in.PovrayReader
1612012-09-12 10:56:13,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Metadata only import? false
1622012-09-12 10:56:13,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Archiving enabled? false
1632012-09-12 10:56:13,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Container metadata only import? false
1642012-09-12 10:56:13,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Reader is not of HCS domain, use metafile: true
1652012-09-12 10:56:13,712 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-61) Unknown target class for LSID: Image:0
1662012-09-12 10:56:17,853 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
1672012-09-12 10:56:17,853 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
1682012-09-12 10:56:17,853 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-61) Depth: 4 Metadata Level: MINIMUM
1692012-09-12 11:00:24,322 INFO  [              loci.formats.FormatHandler] ( Thread-61) Finding XML file
1702012-09-12 11:00:24,947 INFO  [              loci.formats.FormatHandler] ( Thread-61) Parsing XML file
1712012-09-12 11:00:34,103 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Reading IFDs
1722012-09-12 11:00:34,119 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Populating metadata
1732012-09-12 11:00:34,228 INFO  [              loci.formats.in.TiffReader] ( Thread-61) Checking comment style
1742012-09-12 11:00:35,869 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-61) Populating OME metadata
1752012-09-12 11:00:35,931 INFO  [              loci.formats.FormatHandler] ( Thread-61) Populating metadata
1762012-09-12 11:00:36,572 INFO  [              loci.formats.FormatHandler] ( Thread-61) Parsing CFG file
1772012-09-12 11:00:36,884 INFO  [              loci.formats.FormatHandler] ( Thread-61) Populating OME metadata
1782012-09-12 11:00:37,072 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-61) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 258812ms. (259219ms total) [0 unknowns]
1792012-09-12 11:00:37,181 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
1802012-09-12 11:00:37,181 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
1812012-09-12 11:00:44,650 INFO  [              loci.formats.FormatHandler] ( Thread-61) Parsing XML file
1822012-09-12 11:00:52,697 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Reading IFDs
1832012-09-12 11:00:52,697 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Populating metadata
1842012-09-12 11:00:52,744 INFO  [              loci.formats.in.TiffReader] ( Thread-61) Checking comment style
1852012-09-12 11:00:54,400 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-61) Populating OME metadata
1862012-09-12 11:00:54,462 INFO  [              loci.formats.FormatHandler] ( Thread-61) Populating metadata
1872012-09-12 11:00:55,103 INFO  [              loci.formats.FormatHandler] ( Thread-61) Parsing CFG file
1882012-09-12 11:00:55,431 INFO  [              loci.formats.FormatHandler] ( Thread-61) Populating OME metadata
1892012-09-12 11:00:56,431 WARN  [odel.enums.handlers.ImmersionEnumHandler] ( Thread-61) Unknown Immersion value 'null' will be stored as "Other"
1902012-09-12 11:00:56,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) File format: Prairie TIFF
1912012-09-12 11:00:56,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Base reader: loci.formats.in.PrairieReader
1922012-09-12 11:00:56,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Metadata only import? false
1932012-09-12 11:00:56,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Archiving enabled? false
1942012-09-12 11:00:56,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Container metadata only import? false
1952012-09-12 11:00:56,587 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Reader is not of HCS domain, use metafile: true
1962012-09-12 11:00:56,587 DEBUG [              omero.util.TempFileManager] ( Thread-61) Added file \\psf\Home\omero\tmp\omero_gus\3792@gus-PC\ORIGINAL_METADATA_TXT472872132913788614589828632-f063-484a-b1aa-a5032158d385
1972012-09-12 11:00:56,744 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-61) Unknown target class for LSID: Image:0
1982012-09-12 11:01:17,806 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Reading IFDs
1992012-09-12 11:01:17,806 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Populating metadata
2002012-09-12 11:01:17,806 INFO  [              loci.formats.in.TiffReader] ( Thread-61) Checking comment style
2012012-09-12 11:01:19,478 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-61) Populating OME metadata
2022012-09-12 11:01:40,509 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Reading IFDs
2032012-09-12 11:01:40,509 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-61) Populating metadata
2042012-09-12 11:01:40,525 INFO  [              loci.formats.in.TiffReader] ( Thread-61) Checking comment style
2052012-09-12 11:01:42,322 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-61) Populating OME metadata
2062012-09-12 11:03:14,525 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
2072012-09-12 11:03:14,525 INFO  [       ome.formats.importer.ImportConfig] ( Thread-61) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
2082012-09-12 11:03:36,166 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) File format: Adobe Photoshop
2092012-09-12 11:03:36,166 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Base reader: loci.formats.in.PSDReader
2102012-09-12 11:03:36,166 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Metadata only import? false
2112012-09-12 11:03:36,166 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Archiving enabled? false
2122012-09-12 11:03:36,166 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Container metadata only import? false
2132012-09-12 11:03:36,166 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-61) Reader is not of HCS domain, use metafile: true
2142012-09-12 11:03:36,166 DEBUG [              omero.util.TempFileManager] ( Thread-61) Added file \\psf\Home\omero\tmp\omero_gus\3792@gus-PC\ORIGINAL_METADATA_TXT5880533787878882294791c6889-6411-42f4-92eb-9b3a8183a39c
2152012-09-12 11:03:36,166 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-61) Unknown target class for LSID: Image:0
2162012-09-12 11:09:02,947 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 2
2172012-09-12 11:09:37,197 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0
2182012-09-12 11:13:47,431 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0
2192012-09-12 11:27:37,210 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
2202012-09-12 11:27:37,210 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
2212012-09-12 11:28:14,414 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) File format: Quesant AFM
2222012-09-12 11:28:14,414 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Base reader: loci.formats.in.QuesantReader
2232012-09-12 11:28:14,414 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Metadata only import? false
2242012-09-12 11:28:14,414 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Archiving enabled? false
2252012-09-12 11:28:14,414 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Container metadata only import? false
2262012-09-12 11:28:14,414 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Reader is not of HCS domain, use metafile: true
2272012-09-12 11:28:14,414 DEBUG [              omero.util.TempFileManager] (Thread-163) Added file \\psf\Home\omero\tmp\omero_gus\3792@gus-PC\ORIGINAL_METADATA_TXT959194780848391321d4e39c6c-de15-425d-a85f-d96fa589f4b3
2282012-09-12 11:28:14,414 WARN  [    ome.formats.model.ReferenceProcessor] (Thread-163) Unknown target class for LSID: Image:0
2292012-09-12 11:28:45,789 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
2302012-09-12 11:28:45,789 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
2312012-09-12 11:32:30,585 INFO  [              loci.formats.FormatHandler] (Thread-163) Parsing tags
2322012-09-12 11:32:30,648 INFO  [              loci.formats.FormatHandler] (Thread-163) Populating metadata
2332012-09-12 11:32:31,242 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) File format: QuickTime
2342012-09-12 11:32:31,242 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Base reader: loci.formats.in.QTReader
2352012-09-12 11:32:31,242 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Metadata only import? false
2362012-09-12 11:32:31,242 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Archiving enabled? false
2372012-09-12 11:32:31,242 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Container metadata only import? false
2382012-09-12 11:32:31,242 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Reader is not of HCS domain, use metafile: true
2392012-09-12 11:32:31,289 DEBUG [              omero.util.TempFileManager] (Thread-163) Added file \\psf\Home\omero\tmp\omero_gus\3792@gus-PC\ORIGINAL_METADATA_TXT7300211516316376175706faf1e-b1ec-4bf3-968f-3a2376560b98
2402012-09-12 11:32:31,289 WARN  [    ome.formats.model.ReferenceProcessor] (Thread-163) Unknown target class for LSID: Image:0
2412012-09-12 11:34:56,070 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
2422012-09-12 11:34:56,070 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
2432012-09-12 11:35:36,710 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) File format: RHK Technologies
2442012-09-12 11:35:36,710 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Base reader: loci.formats.in.RHKReader
2452012-09-12 11:35:36,710 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Metadata only import? false
2462012-09-12 11:35:36,710 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Archiving enabled? false
2472012-09-12 11:35:36,710 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Container metadata only import? false
2482012-09-12 11:35:36,710 INFO  [      ome.formats.importer.ImportLibrary] (Thread-163) Reader is not of HCS domain, use metafile: true
2492012-09-12 11:35:36,726 WARN  [    ome.formats.model.ReferenceProcessor] (Thread-163) Unknown target class for LSID: Image:0
2502012-09-12 11:35:42,960 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
2512012-09-12 11:35:42,960 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
2522012-09-12 11:35:42,960 INFO  [   ome.formats.importer.ImportCandidates] (Thread-163) Depth: 4 Metadata Level: MINIMUM
2532012-09-12 11:51:01,742 INFO  [       loci.formats.in.MinimalTiffReader] (Thread-163) Reading IFDs
2542012-09-12 11:51:01,789 INFO  [       loci.formats.in.MinimalTiffReader] (Thread-163) Populating metadata
2552012-09-12 11:53:16,945 INFO  [   ome.formats.importer.ImportCandidates] (Thread-163) 299 file(s) parsed into 0 group(s) with 1 call(s) to setId in 699594ms. (1053985ms total) [0 unknowns]
2562012-09-12 11:54:44,429 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
2572012-09-12 11:54:44,429 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
2582012-09-12 11:54:44,429 INFO  [   ome.formats.importer.ImportCandidates] (Thread-163) Depth: 4 Metadata Level: MINIMUM
2592012-09-12 11:54:44,445 INFO  [   ome.formats.importer.ImportCandidates] (Thread-163) 1 file(s) parsed into 0 group(s) with 0 call(s) to setId in 0ms. (16ms total) [0 unknowns]
2602012-09-12 11:54:44,445 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) OMERO Version: 4.4.1-486-b319a8c-ice33-b3078
2612012-09-12 11:54:44,445 INFO  [       ome.formats.importer.ImportConfig] (Thread-163) Bioformats version: 4.4-DEV revision: 6733597 date: 12 September 2012
2622012-09-12 11:54:44,445 INFO  [   ome.formats.importer.ImportCandidates] (Thread-163) Depth: 4 Metadata Level: MINIMUM
2632012-09-12 11:54:44,445 INFO  [   ome.formats.importer.ImportCandidates] (Thread-163) 1 file(s) parsed into 0 group(s) with 0 call(s) to setId in 0ms. (0ms total) [0 unknowns]
2642012-09-12 11:54:56,414 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
265Cannot find annotations for class pojos.DatasetData.
266        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:896)
267        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2737)
268        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1014)
269        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:707)
270        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$5.doCall(StructuredAnnotationLoader.java:188)
271        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
272        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
273        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
274        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
275        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
276        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
277        at java.lang.Thread.run(Unknown Source)
278Caused by: Ice.DNSException
279    error = 0
280    host = "gretzky.openmicroscopy.org.uk"
281        at IceInternal.Network.getAddresses(Network.java:867)
282        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
283        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
284Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
285        at java.net.InetAddress.getAllByName0(Unknown Source)
286        at java.net.InetAddress.getAllByName(Unknown Source)
287        at java.net.InetAddress.getAllByName(Unknown Source)
288        at IceInternal.Network.getAddresses(Network.java:854)
289        ... 2 more
290State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
291Cannot find annotations for class pojos.DatasetData.
292        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:896)
293        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2737)
294        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1014)
295        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:707)
296        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$5.doCall(StructuredAnnotationLoader.java:188)
297        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
298        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
299        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
300        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
301        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
302        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
303        at java.lang.Thread.run(Unknown Source)
304Caused by: Ice.DNSException
305    error = 0
306    host = "gretzky.openmicroscopy.org.uk"
307        at IceInternal.Network.getAddresses(Network.java:867)
308        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
309        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
310Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
311        at java.net.InetAddress.getAllByName0(Unknown Source)
312        at java.net.InetAddress.getAllByName(Unknown Source)
313        at java.net.InetAddress.getAllByName(Unknown Source)
314        at IceInternal.Network.getAddresses(Network.java:854)
315        ... 2 more
316Exception in thread "AWT-EventQueue-0"
317
3182012-09-12 11:54:56,445 ERROR [agents.treeviewer.ExperimenterDataLoader] (entQueue-0) State: 12Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
319Cannot load hierarchy for class pojos.DatasetData.
320        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:896)
321        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2641)
322        at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221)
323        at org.openmicroscopy.shoola.env.data.views.calls.DMLoader$1.doCall(DMLoader.java:91)
324        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
325        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
326        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
327        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
328        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
329        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
330        at java.lang.Thread.run(Unknown Source)
331Caused by: Ice.DNSException
332    error = 0
333    host = "gretzky.openmicroscopy.org.uk"
334        at IceInternal.Network.getAddresses(Network.java:867)
335        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
336        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
337Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
338        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
339        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
340        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
341        at java.net.InetAddress.getAllByName0(Unknown Source)
342        at java.net.InetAddress.getAllByName(Unknown Source)
343        at java.net.InetAddress.getAllByName(Unknown Source)
344        at IceInternal.Network.getAddresses(Network.java:854)
345        ... 2 more
346State: 12Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
347Cannot load hierarchy for class pojos.DatasetData.
348        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:896)
349        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2641)
350        at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221)
351        at org.openmicroscopy.shoola.env.data.views.calls.DMLoader$1.doCall(DMLoader.java:91)
352        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
353        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
354        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
355        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
356        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
357        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
358        at java.lang.Thread.run(Unknown Source)
359Caused by: Ice.DNSException
360    error = 0
361    host = "gretzky.openmicroscopy.org.uk"
362        at IceInternal.Network.getAddresses(Network.java:867)
363        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
364        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
365Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
366        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
367        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
368        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
369        at java.net.InetAddress.getAllByName0(Unknown Source)
370        at java.net.InetAddress.getAllByName(Unknown Source)
371        at java.net.InetAddress.getAllByName(Unknown Source)
372        at IceInternal.Network.getAddresses(Network.java:854)
373        ... 2 more
374Exception in thread "AWT-EventQueue-0"
375
3762012-09-12 11:57:31,858 WARN  [    ome.formats.OMEROMetadataStoreClient] (entQueue-0) Exception closing "8c4f40cd-fbb3-491e-ae8e-3a80cf569175/86:24:41:e3:1378b84e:139b9add19b:-77a5omero.api.RawFileStore" -t:tcp -h 134.36.65.227 -p 42993
377Ice.DNSException
378    error = 0
379    host = "gretzky.openmicroscopy.org.uk"
380        at IceInternal.Network.getAddresses(Network.java:867)
381        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
382        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
383Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
384        at java.net.InetAddress.getAllByName0(Unknown Source)
385        at java.net.InetAddress.getAllByName(Unknown Source)
386        at java.net.InetAddress.getAllByName(Unknown Source)
387        at IceInternal.Network.getAddresses(Network.java:854)
388        ... 2 more
3892012-09-12 11:57:31,858 WARN  [    ome.formats.OMEROMetadataStoreClient] (entQueue-0) Exception closing "8c4f40cd-fbb3-491e-ae8e-3a80cf569175/86:24:41:e3:1378b84e:139b9add19b:-77a4omero.api.RawPixelsStore" -t:tcp -h 134.36.65.227 -p 42993
390Ice.DNSException
391    error = 0
392    host = "gretzky.openmicroscopy.org.uk"
393        at IceInternal.Network.getAddresses(Network.java:867)
394        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
395        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
396Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
397        at java.net.InetAddress.getAllByName0(Unknown Source)
398        at java.net.InetAddress.getAllByName(Unknown Source)
399        at java.net.InetAddress.getAllByName(Unknown Source)
400        at IceInternal.Network.getAddresses(Network.java:854)
401        ... 2 more
4022012-09-12 11:57:31,858 WARN  [    ome.formats.OMEROMetadataStoreClient] (entQueue-0) Exception closing "8c4f40cd-fbb3-491e-ae8e-3a80cf569175/86:24:41:e3:1378b84e:139b9add19b:-77a3omero.api.ThumbnailStore" -t:tcp -h 134.36.65.227 -p 42993
403Ice.DNSException
404    error = 0
405    host = "gretzky.openmicroscopy.org.uk"
406        at IceInternal.Network.getAddresses(Network.java:867)
407        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
408        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
409Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
410        at java.net.InetAddress.getAllByName0(Unknown Source)
411        at java.net.InetAddress.getAllByName(Unknown Source)
412        at java.net.InetAddress.getAllByName(Unknown Source)
413        at IceInternal.Network.getAddresses(Network.java:854)
414        ... 2 more
4152012-09-12 11:57:31,858 WARN  [    ome.formats.OMEROMetadataStoreClient] (entQueue-0) Exception closing 8c4f40cd-fbb3-491e-ae8e-3a80cf569175/fa205489-3260-43be-af51-84167860a4c6omero.api.MetadataStore -t:tcp -h 134.36.65.227 -p 42993
416Ice.DNSException
417    error = 0
418    host = "gretzky.openmicroscopy.org.uk"
419        at IceInternal.Network.getAddresses(Network.java:867)
420        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
421        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
422Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
423        at java.net.InetAddress.getAllByName0(Unknown Source)
424        at java.net.InetAddress.getAllByName(Unknown Source)
425        at java.net.InetAddress.getAllByName(Unknown Source)
426        at IceInternal.Network.getAddresses(Network.java:854)
427        ... 2 more
4282012-09-12 11:57:31,858 DEBUG [              omero.util.TempFileManager] ( Thread-15) Removing tree: \\psf\Home\omero\tmp\omero_gus\3792@gus-PC
4292012-09-12 11:57:48,108 ERROR [                 ome.system.UpgradeCheck] (nitializer) Unknown host:http://upgrade.openmicroscopy.org.uk
4302012-09-12 11:57:48,108 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1037959168
4312012-09-12 11:57:48,124 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.sun.java.swing.plaf.windows.WindowsLookAndFeel
4322012-09-12 11:58:01,655 DEBUG [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Failed to log onto OMERO.
433Reason: Can't connect to OMERO. OMERO info not valid.
434
435Ice.DNSException
436    error = 0
437    host = "gretzky.openmicroscopy.org.uk"
438        at IceInternal.Network.getAddresses(Network.java:867)
439        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
440        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
441Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
442        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
443        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
444        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
445        at java.net.InetAddress.getAllByName0(Unknown Source)
446        at java.net.InetAddress.getAllByName(Unknown Source)
447        at java.net.InetAddress.getAllByName(Unknown Source)
448        at IceInternal.Network.getAddresses(Network.java:854)
449        ... 2 more
450
451OMERO address: gretzky.openmicroscopy.org.uk
452User Name: user-8 -- Password: ***
453org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Can't connect to OMERO. OMERO info not valid.
454
455Ice.DNSException
456    error = 0
457    host = "gretzky.openmicroscopy.org.uk"
458        at IceInternal.Network.getAddresses(Network.java:867)
459        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
460        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
461Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
462        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
463        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
464        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
465        at java.net.InetAddress.getAllByName0(Unknown Source)
466        at java.net.InetAddress.getAllByName(Unknown Source)
467        at java.net.InetAddress.getAllByName(Unknown Source)
468        at IceInternal.Network.getAddresses(Network.java:854)
469        ... 2 more
470
471        at org.openmicroscopy.shoola.env.data.OMEROGateway.createSession(OMEROGateway.java:2313)
472        at org.openmicroscopy.shoola.env.data.DataServicesFactory.connect(DataServicesFactory.java:506)
473        at org.openmicroscopy.shoola.env.data.login.LoginServiceImpl.attempt(LoginServiceImpl.java:139)
474        at org.openmicroscopy.shoola.env.data.login.LoginServiceImpl.login(LoginServiceImpl.java:273)
475        at org.openmicroscopy.shoola.env.data.login.LoginManager.login(LoginManager.java:98)
476        at org.openmicroscopy.shoola.env.init.SplashScreenInit.onEnd(SplashScreenInit.java:165)
477        at org.openmicroscopy.shoola.env.init.Initializer.notifyEnd(Initializer.java:189)
478        at org.openmicroscopy.shoola.env.Container.runStartupProcedure(Container.java:128)
479        at org.openmicroscopy.shoola.env.Container.access$000(Container.java:76)
480        at org.openmicroscopy.shoola.env.Container$1.run(Container.java:173)
481        at java.lang.Thread.run(Unknown Source)
482Caused by: Ice.DNSException
483    error = 0
484    host = "gretzky.openmicroscopy.org.uk"
485        at IceInternal.Network.getAddresses(Network.java:867)
486        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
487        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
488Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
489        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
490        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
491        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
492        at java.net.InetAddress.getAllByName0(Unknown Source)
493        at java.net.InetAddress.getAllByName(Unknown Source)
494        at java.net.InetAddress.getAllByName(Unknown Source)
495        at IceInternal.Network.getAddresses(Network.java:854)
496        ... 2 more
497Failed to log onto OMERO.
498Reason: Can't connect to OMERO. OMERO info not valid.
499
500Ice.DNSException
501    error = 0
502    host = "gretzky.openmicroscopy.org.uk"
503        at IceInternal.Network.getAddresses(Network.java:867)
504        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
505        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
506Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
507        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
508        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
509        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
510        at java.net.InetAddress.getAllByName0(Unknown Source)
511        at java.net.InetAddress.getAllByName(Unknown Source)
512        at java.net.InetAddress.getAllByName(Unknown Source)
513        at IceInternal.Network.getAddresses(Network.java:854)
514        ... 2 more
515
516OMERO address: gretzky.openmicroscopy.org.uk
517User Name: user-8 -- Password: ***
518org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Can't connect to OMERO. OMERO info not valid.
519
520Ice.DNSException
521    error = 0
522    host = "gretzky.openmicroscopy.org.uk"
523        at IceInternal.Network.getAddresses(Network.java:867)
524        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
525        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
526Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
527        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
528        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
529        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
530        at java.net.InetAddress.getAllByName0(Unknown Source)
531        at java.net.InetAddress.getAllByName(Unknown Source)
532        at java.net.InetAddress.getAllByName(Unknown Source)
533        at IceInternal.Network.getAddresses(Network.java:854)
534        ... 2 more
535
536        at org.openmicroscopy.shoola.env.data.OMEROGateway.createSession(OMEROGateway.java:2313)
537        at org.openmicroscopy.shoola.env.data.DataServicesFactory.connect(DataServicesFactory.java:506)
538        at org.openmicroscopy.shoola.env.data.login.LoginServiceImpl.attempt(LoginServiceImpl.java:139)
539        at org.openmicroscopy.shoola.env.data.login.LoginServiceImpl.login(LoginServiceImpl.java:273)
540        at org.openmicroscopy.shoola.env.data.login.LoginManager.login(LoginManager.java:98)
541        at org.openmicroscopy.shoola.env.init.SplashScreenInit.onEnd(SplashScreenInit.java:165)
542        at org.openmicroscopy.shoola.env.init.Initializer.notifyEnd(Initializer.java:189)
543        at org.openmicroscopy.shoola.env.Container.runStartupProcedure(Container.java:128)
544        at org.openmicroscopy.shoola.env.Container.access$000(Container.java:76)
545        at org.openmicroscopy.shoola.env.Container$1.run(Container.java:173)
546        at java.lang.Thread.run(Unknown Source)
547Caused by: Ice.DNSException
548    error = 0
549    host = "gretzky.openmicroscopy.org.uk"
550        at IceInternal.Network.getAddresses(Network.java:867)
551        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:94)
552        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)
553Caused by: java.net.UnknownHostException: gretzky.openmicroscopy.org.uk
554        at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
555        at java.net.InetAddress$1.lookupAllHostAddr(Unknown Source)
556        at java.net.InetAddress.getAddressFromNameService(Unknown Source)
557        at java.net.InetAddress.getAllByName0(Unknown Source)
558        at java.net.InetAddress.getAllByName(Unknown Source)
559        at java.net.InetAddress.getAllByName(Unknown Source)
560        at IceInternal.Network.getAddresses(Network.java:854)
561        ... 2 more
562Exception in thread "Initializer"
563
5642012-09-12 12:07:30,146 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.4.1
565Client version: 4.4.1-486-b319a8c-ice33-b3078
566os_name: Windows 7
567os_arch: x86
568java_version: 1.6.0_35
569os_version: 6.1
570
5712012-09-12 12:07:30,490 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Cannot connect OMERO at: gretzky.openmicroscopy.org.uk
572User Name: user-8 -- Password: ***
573
5742012-09-12 12:07:51,724 WARN  [                 ome.system.UpgradeCheck] (nitializer) UPGRADE AVAILABLE:Please upgrade to 4.4.3 See http://trac.openmicroscopy.org.uk/omero for the latest version
5752012-09-12 12:07:51,740 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1037959168
5762012-09-12 12:07:51,740 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.sun.java.swing.plaf.windows.WindowsLookAndFeel
5772012-09-12 12:07:57,755 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.4.1
578Client version: 4.4.1-486-b319a8c-ice33-b3078
579os_name: Windows 7
580os_arch: x86
581java_version: 1.6.0_35
582os_version: 6.1
583
5842012-09-12 12:07:58,115 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk
585User Name: user-8 -- Password: ***
586

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.81869 sec.)

We're Hiring!