2013-10-17 10:03:57,286 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (nitializer) Network status: true (in 2 ms.) 2013-10-17 10:03:57,428 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk User Name: user-6 -- Password: *** 2013-10-17 10:03:58,741 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-15) Cached networkup: true 2013-10-17 10:03:58,872 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-16) Cached networkup: true 2013-10-17 10:04:14,918 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-17) Network status: true (in 0 ms.) 2013-10-17 10:04:14,925 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-18) Cached networkup: true 2013-10-17 10:04:15,029 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-19) Cached networkup: true 2013-10-17 10:05:03,174 DEBUG [ ome.scifio.io.Location] (entQueue-0) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,175 DEBUG [ ome.scifio.io.Location] (entQueue-0) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,214 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:03,214 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:03,228 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:03,244 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,253 DEBUG [ ome.scifio.io.NIOByteBufferProvider] ( Thread-20) Using mapped byte buffer? false 2013-10-17 10:05:03,301 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/IAGFP-Noc01_R3D.dv.log 2013-10-17 10:05:03,356 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:03,360 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:03,360 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:03,362 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:03,363 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:03,447 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,449 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,478 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/lung-lentiCMtriple-4_R3D.dv 2013-10-17 10:05:03,485 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:03,485 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:03,485 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:03,486 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:03,486 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:03,487 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,489 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,748 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/mt1_R3D_D3D.dv 2013-10-17 10:05:03,781 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:03,781 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:03,781 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:03,781 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:03,781 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:03,782 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,785 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,814 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv 2013-10-17 10:05:03,821 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:03,822 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:03,822 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:03,822 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:03,823 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:03,824 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:03,826 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:04,083 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/test11_R3D.dv 2013-10-17 10:05:04,121 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:04,121 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:04,121 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:04,129 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:04,133 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:04,136 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:04,139 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:04,400 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/CFPNEAT01_R3D.dv 2013-10-17 10:05:04,432 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:04,432 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:04,432 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:04,433 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:04,434 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:04,435 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:04,438 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:04,695 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/SMN10ul03_R3D_D3D.dv 2013-10-17 10:05:04,726 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:04,726 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:04,726 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:04,727 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:04,728 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:04,729 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:04,731 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:04,980 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/off_by_1_a.dv 2013-10-17 10:05:05,016 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:05,016 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:05,016 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:05,016 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:05,016 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:05,017 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:05,019 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:05,271 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:05,274 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:05,778 INFO [ loci.formats.ImageReader] ( Thread-20) OMETiffReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv.ome.tif 2013-10-17 10:05:05,868 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-20) Reading IFDs 2013-10-17 10:05:05,876 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-20) Populating metadata 2013-10-17 10:05:05,882 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:05,886 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:06,079 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:06,081 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 20 file(s) parsed into 9 group(s) with 11 call(s) to setId in 2803ms. (2853ms total) [2 unknowns] 2013-10-17 10:05:06,081 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:06,124 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Network status: true (in 0 ms.) 2013-10-17 10:05:06,309 DEBUG [openmicroscopy.shoola.env.data.Connector] ( Thread-20) Created derived connector: user-10 2013-10-17 10:05:06,356 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:06,386 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:06,386 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:06,388 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:06,388 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:06,406 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv 2013-10-17 10:05:06,409 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:06,409 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:06,409 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:06,410 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:06,410 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:06,411 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:06,411 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 22ms. (24ms total) [0 unknowns] 2013-10-17 10:05:06,411 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:06,412 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:06,412 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:06,412 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:06,662 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:06,662 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:07,497 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:07,498 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:07,498 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:07,499 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:07,500 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:07,522 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/lung-lentiCMtriple-4_R3D.dv 2013-10-17 10:05:07,525 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:07,525 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:07,525 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:07,526 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:07,526 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:07,527 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:07,528 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 27ms. (28ms total) [0 unknowns] 2013-10-17 10:05:07,528 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:07,528 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:07,528 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:07,528 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:07,605 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:07,605 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:08,608 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:08,609 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:08,609 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:08,611 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:08,611 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:08,788 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-0) Cached networkup: true 2013-10-17 10:05:08,826 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/off_by_1_a.dv 2013-10-17 10:05:08,859 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:08,859 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:08,859 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:08,859 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:08,859 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:08,860 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:08,861 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 249ms. (250ms total) [0 unknowns] 2013-10-17 10:05:08,861 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:08,861 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:08,861 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:08,861 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:08,946 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:08,946 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:09,084 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-29) Cached networkup: true 2013-10-17 10:05:09,942 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-2) Cached networkup: true 2013-10-17 10:05:10,141 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-31) Cached networkup: true 2013-10-17 10:05:10,193 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:10,195 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:10,195 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:10,196 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:10,196 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:10,423 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/CFPNEAT01_R3D.dv 2013-10-17 10:05:10,456 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:10,456 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:10,456 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:10,457 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:10,458 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:10,459 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:10,460 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 263ms. (264ms total) [0 unknowns] 2013-10-17 10:05:10,460 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:10,460 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:10,460 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:10,460 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:10,544 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:10,544 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:11,416 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-3) Network status: true (in 1 ms.) 2013-10-17 10:05:11,622 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-33) Cached networkup: true 2013-10-17 10:05:14,780 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:14,784 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:14,784 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:14,785 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:14,785 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:14,977 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/IAGFP-Noc01_R3D.dv 2013-10-17 10:05:15,002 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:15,003 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:15,003 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:15,003 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:15,004 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:15,005 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:15,006 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 219ms. (221ms total) [0 unknowns] 2013-10-17 10:05:15,006 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:15,006 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:15,006 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:15,006 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:15,058 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:15,058 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:17,744 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-0) Network status: true (in 0 ms.) 2013-10-17 10:05:18,028 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-35) Cached networkup: true 2013-10-17 10:05:18,222 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:18,226 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:18,226 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:18,227 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:18,227 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:18,386 INFO [ loci.formats.ImageReader] ( Thread-20) OMETiffReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv.ome.tif 2013-10-17 10:05:18,445 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-20) Reading IFDs 2013-10-17 10:05:18,452 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-20) Populating metadata 2013-10-17 10:05:18,457 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:18,458 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 230ms. (231ms total) [0 unknowns] 2013-10-17 10:05:18,458 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:18,458 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:18,458 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:18,458 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:18,520 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:18,520 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:19,887 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:19,891 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:19,891 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:19,912 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:19,912 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:20,134 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/SMN10ul03_R3D_D3D.dv 2013-10-17 10:05:20,164 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:20,165 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:20,165 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:20,165 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:20,166 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:20,167 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:20,168 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 255ms. (255ms total) [0 unknowns] 2013-10-17 10:05:20,168 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:20,168 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:20,168 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:20,168 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:20,227 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:20,227 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:21,176 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-5) Cached networkup: true 2013-10-17 10:05:21,493 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-38) Cached networkup: true 2013-10-17 10:05:22,614 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-6) Cached networkup: true 2013-10-17 10:05:23,006 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-39) Network status: true (in 0 ms.) 2013-10-17 10:05:24,289 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:24,296 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:24,296 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:24,296 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:24,297 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:24,519 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/test11_R3D.dv 2013-10-17 10:05:24,550 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:24,550 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:24,550 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:24,553 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:24,557 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:24,559 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:24,559 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 262ms. (263ms total) [0 unknowns] 2013-10-17 10:05:24,559 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:24,560 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:24,560 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:24,560 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:24,616 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:24,616 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:26,572 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-5) Cached networkup: true 2013-10-17 10:05:27,306 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-41) Cached networkup: true 2013-10-17 10:05:29,640 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:29,643 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:29,644 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:29,644 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM 2013-10-17 10:05:29,644 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:29,873 INFO [ loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/mt1_R3D_D3D.dv 2013-10-17 10:05:29,906 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading header 2013-10-17 10:05:29,907 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating core metadata 2013-10-17 10:05:29,907 INFO [ loci.formats.FormatHandler] ( Thread-20) Reading extended header 2013-10-17 10:05:29,907 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating original metadata 2013-10-17 10:05:29,907 INFO [ loci.formats.FormatHandler] ( Thread-20) Populating OME metadata 2013-10-17 10:05:29,908 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:29,908 INFO [ ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 263ms. (264ms total) [0 unknowns] 2013-10-17 10:05:29,909 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:29,909 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:29,909 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:29,909 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Network status: true (in 0 ms.) 2013-10-17 10:05:29,967 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439 2013-10-17 10:05:29,967 INFO [ ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013 2013-10-17 10:05:31,559 DEBUG [ ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null 2013-10-17 10:05:31,560 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:05:31,563 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true 2013-10-17 10:09:03,154 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-44) Network status: true (in 0 ms.)