2011-08-05 09:57:06,104 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 129957888 2011-08-05 09:57:06,123 INFO [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel 2011-08-05 09:57:16,383 INFO [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.3.2 Client version: Beta4.3.2-DEV os_name: Mac OS X os_arch: x86_64 java_version: 1.6.0_26 os_version: 10.6.8 2011-08-05 09:57:16,558 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: localhost User Name: ola -- Password: *** 2011-08-05 09:57:55,405 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:57:55,406 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:57:55,451 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:57:55,611 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:55,612 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:55,624 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:56,699 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:56,700 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:56,702 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:56,762 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:56,763 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:56,764 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:56,816 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:56,816 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:56,818 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:56,866 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:56,867 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:56,868 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:56,910 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:56,911 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:56,912 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:56,957 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:56,958 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:56,959 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:57,002 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:57,003 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:57,004 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:57,045 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:57,046 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:57,047 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:57,099 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:57,100 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:57,101 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:57,154 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:57,154 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:57,156 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:57,197 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:57,198 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:57,199 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:57,203 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 12 file(s) parsed into 12 group(s) with 12 call(s) to setId in 1740ms. (1752ms total) [0 unknowns] 2011-08-05 09:57:57,869 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:57:57,869 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:57:58,002 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:57:58,003 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:57:58,015 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:57:58,350 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:57:58,377 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:57:58,382 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:57:58,382 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:57:58,382 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:57:58,382 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:57:58,382 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:57:58,382 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:57:58,395 DEBUG [ omero.util.TempFileManager] ( Thread-19) Chose global tmpdir: /Users/ola 2011-08-05 09:57:58,397 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT69338549693406531845ab23ee6-1d10-41dd-bf9b-7dd697de2c7d 2011-08-05 09:57:58,420 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:02,022 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:02,022 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:02,132 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:02,132 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:02,148 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:02,158 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:02,158 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:02,162 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:02,162 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:02,162 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:02,162 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:02,162 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:02,162 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:02,163 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2027736067606914475e6d8418d-9161-4196-8358-5c7287006d70 2011-08-05 09:58:02,166 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:03,661 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:03,661 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:03,999 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:03,999 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:04,008 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:04,017 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:04,017 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:04,026 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:04,026 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:04,026 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:04,026 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:04,026 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:04,026 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:04,027 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT80869617923521526703fc5b140-055c-49f8-8dcb-8c76df2b4f9c 2011-08-05 09:58:04,030 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:05,522 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:05,522 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:05,668 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:05,668 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:05,678 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:05,713 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:05,713 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:05,719 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:05,719 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:05,719 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:05,719 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:05,719 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:05,720 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:05,721 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT46887107403984983294e03a488-bd56-4209-ae6a-49ff260d0491 2011-08-05 09:58:05,722 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:06,893 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:06,893 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:06,991 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:06,992 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:07,007 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:07,011 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:07,011 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:07,014 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:07,014 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:07,014 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:07,014 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:07,014 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:07,015 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:07,015 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1768133913136557338cdc7e24d-ae14-4613-8a31-59978a98b74e 2011-08-05 09:58:07,016 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:08,249 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:08,249 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:08,491 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:08,491 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:08,501 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:08,514 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:08,514 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:08,517 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:08,517 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:08,518 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:08,518 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:08,518 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:08,518 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:08,518 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8447453568025925330c4059f73-39bd-4907-b2e2-36a834ebc617 2011-08-05 09:58:08,520 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:11,057 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:11,057 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:11,268 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:11,269 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:11,278 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:11,325 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:11,325 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:11,328 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:11,328 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:11,328 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:11,328 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:11,328 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:11,328 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:11,328 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1374473577701119695ede41547-b7a8-4c81-bc18-9425e851c615 2011-08-05 09:58:11,330 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:12,977 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:12,977 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:13,086 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:13,087 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:13,095 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:13,099 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:13,099 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:13,105 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:13,105 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:13,105 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:13,105 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:13,105 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:13,106 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:13,106 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT830542249369778330c4fd4f8-1d42-4d13-aadc-2dc0efa1d980 2011-08-05 09:58:13,107 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:14,063 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:14,063 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:14,174 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:14,175 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:14,195 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:14,199 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:14,199 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:14,202 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:14,202 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:14,202 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:14,202 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:14,202 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:14,202 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:14,203 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT394603094415261286577c7ec1c-915a-4707-939d-d185f4778451 2011-08-05 09:58:14,204 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:15,272 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:15,272 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:15,393 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:15,394 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:15,403 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:15,406 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:15,407 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:15,411 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:15,411 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:15,411 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:15,411 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:15,412 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:15,415 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:15,416 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT6281012741952240861883f8007-642f-4f08-8bab-bacb3fb0ba01 2011-08-05 09:58:15,417 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:16,439 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:16,439 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:16,533 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:16,533 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:16,543 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:16,547 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:16,548 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:16,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:16,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:16,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:16,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:16,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:16,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:16,552 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT9065926505820263443d7910627-12ac-4105-bf01-2d83e48eec33 2011-08-05 09:58:16,553 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:17,483 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:17,483 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:17,582 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:17,582 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:17,594 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:17,597 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:17,597 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:17,600 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:17,600 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:17,600 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:17,600 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:17,600 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:17,601 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:17,601 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7047569542846266443d381823f-a2e2-4d9f-af82-b61e398f1e40 2011-08-05 09:58:17,602 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:18,572 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:18,572 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:18,573 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:18,626 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:18,626 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:18,627 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:18,629 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 55ms. (56ms total) [0 unknowns] 2011-08-05 09:58:18,639 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:18,639 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:18,724 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:18,725 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:18,732 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:18,740 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:18,740 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:18,740 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:18,740 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:18,740 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:18,740 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:18,741 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3240821456824130881a5145eb9-9a49-46bd-b8e3-2b7429c46fdd 2011-08-05 09:58:18,743 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:19,863 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:19,863 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:19,864 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:19,898 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:19,898 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:19,899 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:19,901 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 36ms. (37ms total) [0 unknowns] 2011-08-05 09:58:19,920 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:19,920 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:20,006 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:20,006 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:20,012 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:20,019 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:20,019 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:20,019 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:20,019 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:20,019 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:20,019 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:20,019 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT81571483932804566366ca0e555-0470-418c-8673-0e4b6c76eb4b 2011-08-05 09:58:20,021 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:21,680 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:21,680 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:21,681 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:21,720 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:21,720 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:21,721 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:21,723 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 42ms. (42ms total) [0 unknowns] 2011-08-05 09:58:21,751 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:21,751 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:21,864 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:21,865 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:21,880 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:21,887 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:21,887 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:21,887 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:21,887 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:21,887 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:21,887 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:21,887 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4724993049472753488a66e2230-348c-4a75-80ee-b1f89f9ee1cd 2011-08-05 09:58:21,889 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:23,172 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:23,172 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:23,173 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:23,231 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:23,231 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:23,232 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:23,239 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 66ms. (66ms total) [0 unknowns] 2011-08-05 09:58:23,249 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:23,249 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:23,344 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:23,344 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:23,380 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:23,388 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:23,388 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:23,388 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:23,388 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:23,388 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:23,388 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:23,389 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT553054216874239150190c9abe6-c5dd-4914-b9eb-076b7a479f90 2011-08-05 09:58:23,391 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:24,573 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:24,573 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:24,574 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:24,605 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:24,606 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:24,606 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:24,608 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 34ms. (34ms total) [0 unknowns] 2011-08-05 09:58:24,618 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:24,618 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:24,701 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:24,702 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:24,708 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:24,714 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:24,714 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:24,714 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:24,714 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:24,714 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:24,714 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:24,714 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT80443521466433307204eb4f1c9-74fe-48e1-b66e-ea0762cfa973 2011-08-05 09:58:24,716 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:25,804 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:25,804 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:25,805 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:25,840 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:25,840 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:25,841 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:25,843 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 37ms. (38ms total) [0 unknowns] 2011-08-05 09:58:25,854 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:25,854 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:25,942 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:25,943 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:25,949 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:25,956 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:25,956 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:25,956 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:25,956 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:25,956 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:25,956 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:25,956 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT552165703689480354275098aa1-36be-4edd-afb8-b609b1fc38ba 2011-08-05 09:58:25,958 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:27,027 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:27,028 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:27,028 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:27,096 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:27,096 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:27,097 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:27,099 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 70ms. (71ms total) [0 unknowns] 2011-08-05 09:58:27,109 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:27,109 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:27,195 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:27,195 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:27,201 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:27,207 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:27,207 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:27,207 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:27,207 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:27,207 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:27,207 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:27,207 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT156951100609302598580b93a63-566c-46b1-9acd-35e1c0e4dcd6 2011-08-05 09:58:27,209 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:28,505 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:28,505 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:28,506 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:28,541 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:28,542 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:28,543 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:28,551 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 44ms. (44ms total) [0 unknowns] 2011-08-05 09:58:28,565 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:28,565 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:28,683 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:28,684 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:28,690 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:28,696 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:28,697 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:28,697 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:28,697 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:28,697 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:28,697 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:28,697 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3860391750674074177d8686353-87cd-4f17-ba47-971ee2f05ffa 2011-08-05 09:58:28,699 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:31,145 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:31,145 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:31,146 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:31,195 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:31,196 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:31,197 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:31,199 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 51ms. (53ms total) [0 unknowns] 2011-08-05 09:58:31,291 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:31,291 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:31,500 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:31,500 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:31,512 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:31,532 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:31,532 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:31,532 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:31,532 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:31,532 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:31,532 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:31,533 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2833904789297605436276fa26e-30f9-4ee2-b8c8-d3d63952537a 2011-08-05 09:58:31,535 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:32,774 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:32,774 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:32,775 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:32,826 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:32,827 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:32,827 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:32,829 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 53ms. (54ms total) [0 unknowns] 2011-08-05 09:58:32,841 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:32,841 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:32,923 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:32,923 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:32,929 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:32,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:32,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:32,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:32,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:32,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:32,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:32,936 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT68092700690642824434a9dee0f-553a-4e82-a217-bcbd2fb3332d 2011-08-05 09:58:32,937 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:34,523 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:34,523 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:34,524 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:34,558 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:34,558 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:34,559 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:34,561 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 36ms. (37ms total) [0 unknowns] 2011-08-05 09:58:34,571 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:34,571 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:34,681 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:34,682 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:34,689 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:34,695 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:34,695 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:34,695 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:34,695 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:34,695 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:34,695 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:34,695 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT457722922633277197483fb7450-3e85-4307-81f4-8b36d953338a 2011-08-05 09:58:34,697 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:35,970 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:35,970 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:35,971 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:36,062 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,063 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,063 INFO [ loci.formats.in.TiffReader] ( Thread-19) Checking comment style 2011-08-05 09:58:36,064 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,126 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,127 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,127 INFO [ loci.formats.in.TiffReader] ( Thread-19) Checking comment style 2011-08-05 09:58:36,127 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,196 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,196 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,197 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,254 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,254 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,255 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,286 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,286 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,287 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,358 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,359 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,360 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,390 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,390 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,391 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,422 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,422 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,423 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,454 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,454 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,455 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,488 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,488 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,489 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,562 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,563 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,564 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,607 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,607 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,608 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,659 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,661 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,662 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,701 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,701 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,702 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,749 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,749 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,760 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,804 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,805 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,806 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,842 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,843 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,844 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,886 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,887 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,888 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,929 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,929 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,930 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:36,972 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:36,973 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:36,974 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,020 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,021 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,022 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,075 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,075 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,077 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,142 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,145 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,149 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,208 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,208 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,210 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,265 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,265 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,271 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,317 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,317 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,317 INFO [ loci.formats.in.TiffReader] ( Thread-19) Checking comment style 2011-08-05 09:58:37,318 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,382 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,382 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,383 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,428 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,428 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,429 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,484 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,484 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,487 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,569 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,569 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,569 INFO [ loci.formats.in.TiffReader] ( Thread-19) Checking comment style 2011-08-05 09:58:37,575 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,593 INFO [ ome.formats.importer.ImportCandidates] ( Thread-19) 31 file(s) parsed into 30 group(s) with 30 call(s) to setId in 1594ms. (1622ms total) [0 unknowns] 2011-08-05 09:58:37,696 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:37,696 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:37,849 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:37,850 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:37,895 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:37,900 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:37,900 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:37,903 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:37,903 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:37,903 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:37,903 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:37,903 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:37,903 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:37,903 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT6361018795115924038fa37bebf-1bf7-4d4a-9773-43bff7e08745 2011-08-05 09:58:37,904 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:39,580 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:39,580 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:39,678 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:39,678 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:39,684 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:39,693 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:39,693 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:39,693 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:39,693 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:39,693 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:39,693 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:39,693 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2826986435444652475722ca8f8-71c1-448c-a718-0f8d414566f7 2011-08-05 09:58:39,695 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:40,858 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:40,858 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:40,948 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:40,948 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:40,962 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:40,966 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:40,966 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:40,969 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:40,969 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:40,969 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:40,969 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:40,969 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:40,969 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:40,970 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1775833342783609081c9730e57-7b58-460c-a38f-e3872f25d5d5 2011-08-05 09:58:40,972 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:41,933 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:41,933 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:42,034 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:42,034 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:42,040 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:42,043 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:42,043 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:42,046 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:42,046 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:42,046 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:42,046 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:42,046 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:42,046 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:42,047 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT425374656643426671c0b4467a-6f97-47fa-b65c-9107a70bd4bd 2011-08-05 09:58:42,048 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:43,095 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:43,095 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:43,219 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:43,219 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:43,220 INFO [ loci.formats.in.TiffReader] ( Thread-19) Checking comment style 2011-08-05 09:58:43,220 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:43,239 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Tagged Image File Format 2011-08-05 09:58:43,239 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.TiffDelegateReader 2011-08-05 09:58:43,239 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:43,239 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:43,239 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:43,240 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:43,240 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT66112759529706682888ef092a7-30ec-4e41-ba1e-8e18ef33555a 2011-08-05 09:58:43,241 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:44,234 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:44,234 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:44,364 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:44,364 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:44,373 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:44,379 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:44,379 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:44,379 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:44,379 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:44,379 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:44,379 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:44,379 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2524362131158427594da61df93-5219-406a-a1bb-896cac6a0be7 2011-08-05 09:58:44,382 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:45,831 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:45,831 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:45,923 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:45,924 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:45,930 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:45,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:45,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:45,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:45,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:45,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:45,935 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:45,936 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2849824033547198107f2664c1-711c-4c8f-b72c-e7f801ddc2a2 2011-08-05 09:58:45,937 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:47,880 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:47,880 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:47,986 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:47,986 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:47,987 INFO [ loci.formats.in.TiffReader] ( Thread-19) Checking comment style 2011-08-05 09:58:47,987 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:47,989 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Tagged Image File Format 2011-08-05 09:58:47,989 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.TiffDelegateReader 2011-08-05 09:58:47,989 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:47,989 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:47,989 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:47,989 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:47,990 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT482066634024063696fb5d518e-38c6-4939-ba2d-2a6ae2e8cc74 2011-08-05 09:58:47,990 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:48,910 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:48,910 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:48,995 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:48,995 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:49,001 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:49,007 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:49,007 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:49,007 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:49,007 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:49,007 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:49,007 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:49,007 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8017146450576635848c552c901-5b6a-4d81-adb2-f6567e13036f 2011-08-05 09:58:49,009 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:50,114 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:50,115 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:50,203 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:50,204 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:50,216 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:50,223 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:50,224 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:50,224 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:50,224 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:50,224 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:50,224 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:50,224 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT82439956282013439544de016fe-3d09-449b-b773-9f03a8ddf788 2011-08-05 09:58:50,237 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:51,409 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:51,409 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:51,512 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:51,512 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:51,518 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:51,521 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:51,521 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:51,524 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:51,524 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:51,524 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:51,524 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:51,524 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:51,524 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:51,524 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT696955406425499085470471a50-89fb-4f52-983b-37882c41bc33 2011-08-05 09:58:51,525 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:51,698 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:51,698 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:51,699 INFO [ ome.formats.importer.ImportCandidates] ( Thread-24) Depth: 4 Metadata Level: MINIMUM 2011-08-05 09:58:51,744 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:51,744 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:51,744 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:51,748 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:51,750 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:51,783 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:51,783 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:51,783 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:51,787 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:51,790 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:51,820 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:51,820 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:51,820 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:51,837 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:51,841 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:51,876 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:51,877 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:51,877 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:51,877 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:51,877 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:51,902 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:51,902 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:51,902 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:51,905 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:51,906 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:51,908 INFO [ ome.formats.importer.ImportCandidates] ( Thread-24) 5 file(s) parsed into 5 group(s) with 5 call(s) to setId in 206ms. (209ms total) [0 unknowns] 2011-08-05 09:58:52,277 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:52,277 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:52,414 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:52,414 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:52,414 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:52,416 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:52,428 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:52,443 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:52,444 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:52,482 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:52,550 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) File format: Deltavision 2011-08-05 09:58:52,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 09:58:52,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Metadata only import? false 2011-08-05 09:58:52,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Archiving enabled? false 2011-08-05 09:58:52,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Container metadata only import? false 2011-08-05 09:58:52,551 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:52,552 DEBUG [ omero.util.TempFileManager] ( Thread-24) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT86570676827463491948bfc98f7-caca-44e8-b30f-cf389b69c114 2011-08-05 09:58:52,555 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-24) Unknown target class for LSID: Image:0 2011-08-05 09:58:53,524 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:53,524 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:53,731 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:53,732 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:53,750 INFO [ loci.formats.in.TiffReader] ( Thread-19) Checking comment style 2011-08-05 09:58:53,751 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:53,775 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Tagged Image File Format 2011-08-05 09:58:53,775 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.TiffDelegateReader 2011-08-05 09:58:53,775 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:53,775 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:53,775 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:53,775 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:53,776 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT83829569690156842556b9d3b37-2772-407c-be96-aeab8fda3010 2011-08-05 09:58:53,776 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:54,287 ERROR [ ome.formats.importer.ImportLibrary] ( Thread-24) Close exception hidden by previous exception Ice.ObjectNotExistException id.name = "a:c:2:36:16afe716:131990ea7b4:-7fc8omero.api.RawPixelsStore" id.category = "67fad290-015b-4f7f-9373-599201ad0a1e" facet = "" operation = "close" at IceInternal.Outgoing.invoke(Outgoing.java:147) at omero.api._RawPixelsStoreDelM.close(_RawPixelsStoreDelM.java:1894) at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2642) at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2614) at ome.formats.OMEROMetadataStoreClient.finalizePixelStore(OMEROMetadataStoreClient.java:2479) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:593) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6314) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,311 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-24) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7ff8omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320 omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (org.hibernate.HibernateException): Flush during cascade is dangerous at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1204) at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302) at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118) at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420) at ome.security.basic.EventHandler.invoke(EventHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227) at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120) at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142) at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.InternalException" message = " Wrapped Exception: (org.hibernate.HibernateException): Flush during cascade is dangerous" at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,333 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7ff8omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320 omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (org.springframework.transaction.TransactionSystemException): Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed at org.springframework.jdbc.datasource.DataSourceTransactionManager.doRollback(DataSourceTransactionManager.java:286) at org.springframework.transaction.support.AbstractPlatformTransactionManager.doRollbackOnCommitException(AbstractPlatformTransactionManager.java:895) at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:782) at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:723) at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:412) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:118) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227) at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120) at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142) at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.InternalException" message = " Wrapped Exception: (org.springframework.transaction.TransactionSystemException): Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed" at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,425 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:54,425 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:54,446 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:54,446 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:54,597 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:54,598 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:54,598 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:54,601 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:54,611 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:54,614 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:54,614 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:54,623 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:54,708 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:54,709 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:54,709 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:54,735 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) File format: Deltavision 2011-08-05 09:58:54,735 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 09:58:54,735 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Metadata only import? false 2011-08-05 09:58:54,735 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Archiving enabled? false 2011-08-05 09:58:54,735 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Container metadata only import? false 2011-08-05 09:58:54,735 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:54,736 DEBUG [ omero.util.TempFileManager] ( Thread-24) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7641369026663285012341478a3-2e9c-4342-a8ca-39a1361cbbd9 2011-08-05 09:58:54,737 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-24) Unknown target class for LSID: Image:0 2011-08-05 09:58:54,738 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:54,750 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:54,754 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:54,754 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:54,754 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:54,754 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:54,754 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:54,755 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:54,755 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4976720291863628820e5aeea72-e42c-43b4-8adb-b764ac807be6 2011-08-05 09:58:54,758 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:54,758 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:54,829 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-24) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc7omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320 omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (org.hibernate.HibernateException): Flush during cascade is dangerous at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1204) at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302) at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118) at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420) at ome.security.basic.EventHandler.invoke(EventHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227) at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120) at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142) at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.InternalException" message = " Wrapped Exception: (org.hibernate.HibernateException): Flush during cascade is dangerous" at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,847 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc7omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320 omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (org.springframework.transaction.TransactionSystemException): Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed at org.springframework.jdbc.datasource.DataSourceTransactionManager.doRollback(DataSourceTransactionManager.java:286) at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:845) at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:822) at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:430) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:112) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.close(Unknown Source) at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227) at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120) at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142) at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.InternalException" message = " Wrapped Exception: (org.springframework.transaction.TransactionSystemException): Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed" at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,857 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-24) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc6omero.api.RawPixelsStore" -t:tcp -h 10.12.2.54 -p 49320 omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (org.hibernate.HibernateException): Flush during cascade is dangerous at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1204) at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302) at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118) at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420) at ome.security.basic.EventHandler.invoke(EventHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy82.close(Unknown Source) at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy82.close(Unknown Source) at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227) at omero.api._RawPixelsStoreTie.close_async(_RawPixelsStoreTie.java:330) at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142) at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1157) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.InternalException" message = " Wrapped Exception: (org.hibernate.HibernateException): Flush during cascade is dangerous" at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._RawPixelsStoreDelM.close(_RawPixelsStoreDelM.java:1901) at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2642) at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2614) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:920) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,864 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc6omero.api.RawPixelsStore" -t:tcp -h 10.12.2.54 -p 49320 omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (org.hibernate.SessionException): Session is closed! at org.hibernate.impl.AbstractSessionImpl.errorIfClosed(AbstractSessionImpl.java:72) at org.hibernate.impl.SessionImpl.getJDBCContext(SessionImpl.java:2002) at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:328) at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51) at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1208) at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312) at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302) at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118) at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420) at ome.security.basic.EventHandler.invoke(EventHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy82.close(Unknown Source) at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy82.close(Unknown Source) at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227) at omero.api._RawPixelsStoreTie.close_async(_RawPixelsStoreTie.java:330) at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142) at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1157) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.InternalException" message = " Wrapped Exception: (org.hibernate.SessionException): Session is closed!" at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._RawPixelsStoreDelM.close(_RawPixelsStoreDelM.java:1901) at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2642) at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2614) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:920) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,866 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc5omero.api.ThumbnailStore" -t:tcp -h 10.12.2.54 -p 49320 Ice.ObjectNotExistException id.name = "a:c:2:36:16afe716:131990ea7b4:-7fc5omero.api.ThumbnailStore" id.category = "67fad290-015b-4f7f-9373-599201ad0a1e" facet = "" operation = "close" at IceInternal.Outgoing.invoke(Outgoing.java:147) at omero.api._ThumbnailStoreDelM.close(_ThumbnailStoreDelM.java:63) at omero.api.ThumbnailStorePrxHelper.close(ThumbnailStorePrxHelper.java:117) at omero.api.ThumbnailStorePrxHelper.close(ThumbnailStorePrxHelper.java:89) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:923) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,868 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing 67fad290-015b-4f7f-9373-599201ad0a1e/a1266e6b-244f-460a-9066-550ab8408c23omero.api.MetadataStore -t:tcp -h 10.12.2.54 -p 49320 Ice.ObjectNotExistException id.name = "a1266e6b-244f-460a-9066-550ab8408c23omero.api.MetadataStore" id.category = "67fad290-015b-4f7f-9373-599201ad0a1e" facet = "" operation = "close" at IceInternal.Outgoing.invoke(Outgoing.java:147) at omero.api._MetadataStoreDelM.close(_MetadataStoreDelM.java:386) at omero.api.MetadataStorePrxHelper.close(MetadataStorePrxHelper.java:598) at omero.api.MetadataStorePrxHelper.close(MetadataStorePrxHelper.java:570) at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896) at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:926) at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) 2011-08-05 09:58:54,980 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:54,981 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:55,026 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:55,026 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:55,169 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:55,169 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:55,169 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:55,170 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:55,170 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:55,227 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:55,227 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:55,234 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:55,406 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:55,429 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:55,432 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:55,432 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:55,432 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:55,432 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:55,432 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:55,432 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:55,433 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7900368334191687276c521bbc1-cb2f-4452-aa6e-85e3ad9b1d34 2011-08-05 09:58:55,434 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:55,444 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:55,444 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:55,680 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:55,681 INFO [ ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:55,690 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 09:58:55,690 INFO [ ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 09:58:55,836 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:55,836 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating core metadata 2011-08-05 09:58:55,836 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading extended header 2011-08-05 09:58:55,839 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:55,854 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:55,909 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs 2011-08-05 09:58:55,909 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata 2011-08-05 09:58:55,923 INFO [ loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata 2011-08-05 09:58:56,047 INFO [ loci.formats.FormatHandler] ( Thread-24) Reading header 2011-08-05 09:58:56,047 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating original metadata 2011-08-05 09:58:56,048 INFO [ loci.formats.FormatHandler] ( Thread-24) Populating OME metadata 2011-08-05 09:58:56,077 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 09:58:56,078 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) File format: Deltavision 2011-08-05 09:58:56,078 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 09:58:56,078 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Metadata only import? false 2011-08-05 09:58:56,078 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Archiving enabled? false 2011-08-05 09:58:56,079 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Container metadata only import? false 2011-08-05 09:58:56,079 INFO [ ome.formats.importer.ImportLibrary] ( Thread-24) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:56,079 DEBUG [ omero.util.TempFileManager] ( Thread-24) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT42638338586673596375353161d-e596-4176-80ac-66944e30065a 2011-08-05 09:58:56,082 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-24) Unknown target class for LSID: Image:0 2011-08-05 09:58:56,110 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 09:58:56,114 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK 2011-08-05 09:58:56,114 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader 2011-08-05 09:58:56,114 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false 2011-08-05 09:58:56,114 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false 2011-08-05 09:58:56,114 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false 2011-08-05 09:58:56,114 INFO [ ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true 2011-08-05 09:58:56,115 DEBUG [ omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4115508825493299786e267bdf5-0fde-4d1c-8445-fd3dd244be51 2011-08-05 09:58:56,119 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 09:58:56,119 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0 2011-08-05 10:05:44,197 DEBUG [ omero.util.TempFileManager] ( Thread-20) Removing tree: /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk 2011-08-05 10:05:54,761 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 129957888 2011-08-05 10:05:54,767 INFO [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel 2011-08-05 10:05:58,348 INFO [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.3.2 Client version: Beta4.3.2-DEV os_name: Mac OS X os_arch: x86_64 java_version: 1.6.0_26 os_version: 10.6.8 2011-08-05 10:05:58,491 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: localhost User Name: ola -- Password: *** 2011-08-05 10:06:28,011 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:28,011 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:28,209 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:28,211 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:28,237 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:29,437 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:29,450 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:29,458 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:29,458 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:29,458 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:29,458 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:29,458 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:29,459 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:29,484 DEBUG [ omero.util.TempFileManager] ( Thread-21) Chose global tmpdir: /Users/ola 2011-08-05 10:06:29,486 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT78574443755285953332ffdfbd8-2a1b-4212-87a0-13d1e24c1344 2011-08-05 10:06:29,511 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:31,410 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:31,410 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:31,883 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:31,884 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:31,898 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:31,907 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:31,907 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:31,913 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:31,913 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:31,913 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:31,913 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:31,913 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:31,913 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:31,914 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3894760049340472416c69e5947-dab0-4100-a26a-9ce3c5122d5c 2011-08-05 10:06:31,917 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:37,798 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:37,798 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:37,977 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:37,978 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:37,989 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:38,000 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:38,000 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:38,004 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:38,004 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:38,004 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:38,004 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:38,005 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:38,005 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:38,005 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7977211776918209261d271f53f-3d17-487e-a723-2851d2ff94dc 2011-08-05 10:06:38,010 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:40,002 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:40,003 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:40,222 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:40,222 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:40,242 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:40,277 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:40,277 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:40,281 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:40,281 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:40,282 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:40,282 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:40,282 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:40,282 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:40,282 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT71255363870099992721f3d67f1-b736-445a-aefa-6092b2454641 2011-08-05 10:06:40,283 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:42,262 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:42,262 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:42,438 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:42,438 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:42,455 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:42,461 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:42,464 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:42,468 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:42,468 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:42,468 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:42,468 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:42,468 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:42,468 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:42,468 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2674149843153551160c30f7c07-4c5d-45d9-a2aa-9e7ced6a366d 2011-08-05 10:06:42,470 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:44,068 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:44,068 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:44,205 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:44,205 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:44,214 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:44,220 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:44,220 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:44,223 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:44,223 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:44,223 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:44,223 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:44,223 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:44,223 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:44,224 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT73691400941495315987b50ef4a-108e-4f76-951b-e0c5599497c3 2011-08-05 10:06:44,225 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:45,929 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:45,930 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:46,066 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:46,067 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:46,077 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:46,081 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:46,081 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:46,085 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:46,085 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:46,085 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:46,085 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:46,085 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:46,085 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:46,085 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2060473520148280875c2b031a-5531-4746-ad1a-f11e07e3c368 2011-08-05 10:06:46,087 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:47,813 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:47,813 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:47,980 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:47,980 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:47,989 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:47,993 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:47,994 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:47,997 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:47,997 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:47,997 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:47,997 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:47,997 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:47,997 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:47,998 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5121044750387534918157ebf96-7289-49c1-9ac6-41dc010fd742 2011-08-05 10:06:47,999 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:50,963 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:50,963 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:51,144 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:51,145 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:51,155 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:51,163 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:51,163 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:51,168 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:51,168 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:51,168 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:51,168 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:51,168 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:51,168 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:51,168 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT55929547664295390529a9322c7-4a0d-4441-a5fd-1dd67b9be8ba 2011-08-05 10:06:51,170 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:52,966 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:52,966 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:53,165 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:53,166 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:53,188 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:53,192 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:53,192 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:53,198 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:53,198 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:53,198 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:53,198 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:53,198 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:53,199 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:53,199 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT61988984325969446881c30454e-3ada-46cd-9553-8cae2ae34fae 2011-08-05 10:06:53,200 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:54,811 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:54,811 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:54,933 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:54,933 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:54,951 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:54,955 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:54,955 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:54,967 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:54,967 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:54,967 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:54,967 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:54,967 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:54,967 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:54,968 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3557980521405747738fc84ecdc-7601-4145-bef3-da8075def8ea 2011-08-05 10:06:54,969 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:57,128 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:57,128 INFO [ ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:57,301 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs 2011-08-05 10:06:57,301 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata 2011-08-05 10:06:57,310 INFO [ loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata 2011-08-05 10:06:57,314 WARN [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other" 2011-08-05 10:06:57,314 WARN [ ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null' 2011-08-05 10:06:57,317 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK 2011-08-05 10:06:57,317 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader 2011-08-05 10:06:57,317 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false 2011-08-05 10:06:57,317 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false 2011-08-05 10:06:57,317 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false 2011-08-05 10:06:57,317 INFO [ ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true 2011-08-05 10:06:57,317 DEBUG [ omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT28166372033143313999c3c6d6b-d6de-4ee2-8dc1-0ed4cd044efc 2011-08-05 10:06:57,318 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0 2011-08-05 10:06:59,867 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:06:59,870 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:06:59,963 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:06:59,963 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating core metadata 2011-08-05 10:06:59,963 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading extended header 2011-08-05 10:06:59,967 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:07:00,074 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:07:00,329 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:07:00,329 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:07:00,330 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:07:00,384 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision 2011-08-05 10:07:00,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:07:00,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false 2011-08-05 10:07:00,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false 2011-08-05 10:07:00,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false 2011-08-05 10:07:00,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true 2011-08-05 10:07:00,386 DEBUG [ omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT894985039063429607e4cd18ca-2895-4916-a28a-89fb43f7a257 2011-08-05 10:07:00,393 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0 2011-08-05 10:07:31,800 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:07:31,800 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:07:31,965 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:07:31,966 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating core metadata 2011-08-05 10:07:31,966 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading extended header 2011-08-05 10:07:31,971 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:07:31,990 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:07:32,015 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:07:32,015 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:07:32,016 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:07:32,052 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision 2011-08-05 10:07:32,052 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:07:32,052 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false 2011-08-05 10:07:32,052 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false 2011-08-05 10:07:32,054 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false 2011-08-05 10:07:32,054 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true 2011-08-05 10:07:32,060 DEBUG [ omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT658073076957056842790ffe5d1-b39f-4ff2-af6b-99fe864a0183 2011-08-05 10:07:32,076 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0 2011-08-05 10:08:39,105 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:08:39,105 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:08:39,210 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:08:39,210 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating core metadata 2011-08-05 10:08:39,210 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading extended header 2011-08-05 10:08:39,214 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:08:39,225 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:08:39,241 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:08:39,242 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:08:39,243 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:08:39,255 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision 2011-08-05 10:08:39,255 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:08:39,255 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false 2011-08-05 10:08:39,255 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false 2011-08-05 10:08:39,255 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false 2011-08-05 10:08:39,257 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true 2011-08-05 10:08:39,259 DEBUG [ omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4126858833020085253d27af75-bf1a-4ffc-a1a3-825c0e0dc215 2011-08-05 10:08:39,261 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0 2011-08-05 10:09:01,283 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:09:01,283 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:09:01,378 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:09:01,378 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating core metadata 2011-08-05 10:09:01,378 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading extended header 2011-08-05 10:09:01,379 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:09:01,379 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:09:01,381 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:09:01,382 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:09:01,382 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:09:01,383 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision 2011-08-05 10:09:01,383 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:09:01,383 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false 2011-08-05 10:09:01,383 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false 2011-08-05 10:09:01,383 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false 2011-08-05 10:09:01,384 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true 2011-08-05 10:09:01,384 DEBUG [ omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8389876253603457122bcec7328-e9ca-4c01-a9f3-e05df5156f34 2011-08-05 10:09:01,385 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0 2011-08-05 10:09:02,943 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:09:02,943 INFO [ ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:09:03,026 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:09:03,026 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating core metadata 2011-08-05 10:09:03,026 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading extended header 2011-08-05 10:09:03,031 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:09:03,042 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:09:03,067 INFO [ loci.formats.FormatHandler] ( Thread-28) Reading header 2011-08-05 10:09:03,067 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating original metadata 2011-08-05 10:09:03,068 INFO [ loci.formats.FormatHandler] ( Thread-28) Populating OME metadata 2011-08-05 10:09:03,082 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision 2011-08-05 10:09:03,082 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:09:03,082 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false 2011-08-05 10:09:03,082 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false 2011-08-05 10:09:03,082 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false 2011-08-05 10:09:03,082 INFO [ ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true 2011-08-05 10:09:03,083 DEBUG [ omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5225518926891074854315a834e-95c0-4e64-bc8c-5ecb74bbd4a1 2011-08-05 10:09:03,085 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0 2011-08-05 10:09:31,507 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:09:31,507 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:09:31,516 INFO [ ome.formats.importer.ImportCandidates] ( Thread-29) Depth: 4 Metadata Level: MINIMUM 2011-08-05 10:09:31,566 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,566 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,566 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,567 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,567 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,598 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,598 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,598 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,600 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,601 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,638 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,638 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,638 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,641 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,642 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,679 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,679 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,679 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,681 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,682 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,715 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,715 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,715 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,718 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,721 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,752 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,752 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,752 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,753 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,755 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,789 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,789 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,789 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,791 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,791 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,820 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,820 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,820 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,821 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,822 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,856 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,856 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,856 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,859 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,860 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,885 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,885 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,885 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,887 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,889 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:31,922 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:31,922 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:31,922 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:31,923 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:31,924 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,041 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,041 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,041 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,042 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,042 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,075 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,075 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,075 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,075 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,075 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,136 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,136 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,136 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,138 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,142 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,171 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,171 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,172 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,172 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,172 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,202 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,202 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,202 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,202 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,202 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,254 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,254 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,254 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,255 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,255 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,290 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,290 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,290 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,292 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,293 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,326 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,326 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,326 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,327 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,328 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,359 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,359 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,359 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,360 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,361 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,401 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,401 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,401 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,403 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,404 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,434 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,434 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,434 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,436 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,436 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,476 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,476 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,476 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,478 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,478 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,517 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:32,517 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:32,517 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:32,518 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:32,518 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:32,522 INFO [ ome.formats.importer.ImportCandidates] ( Thread-29) 28 file(s) parsed into 25 group(s) with 27 call(s) to setId in 993ms. (1006ms total) [2 unknowns] 2011-08-05 10:09:32,696 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:09:32,697 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:09:32,963 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Adobe Photoshop 2011-08-05 10:09:32,963 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.PSDReader 2011-08-05 10:09:32,963 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:09:32,963 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:09:32,963 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:09:32,963 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:09:32,964 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT646101568007774965e4ec48d4-79a4-456a-859c-8622d0b7147c 2011-08-05 10:09:32,965 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:09:34,408 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:09:34,408 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:09:34,527 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:34,527 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:34,528 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:34,529 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:34,542 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:34,551 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:34,552 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:34,552 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:34,563 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:09:34,563 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:09:34,563 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:09:34,563 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:09:34,563 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:09:34,563 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:09:34,563 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT844897328266208873ebc2c7ed-4f49-413e-a502-15fea2670fea 2011-08-05 10:09:34,581 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:09:56,311 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:09:56,311 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:09:56,403 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:56,403 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:09:56,403 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:09:56,405 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:56,442 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:56,457 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:09:56,459 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:09:56,459 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:09:56,470 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:09:56,470 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:09:56,470 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:09:56,470 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:09:56,470 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:09:56,471 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:09:56,472 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1442751726710649029eed597f2-4d93-452e-ab23-fb12e9111cd6 2011-08-05 10:09:56,486 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:10:20,302 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:10:20,302 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:10:20,401 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:10:20,402 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:10:20,402 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:10:20,402 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:10:20,407 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:10:20,417 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:10:20,417 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:10:20,418 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:10:20,426 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:10:20,426 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:10:20,426 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:10:20,426 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:10:20,426 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:10:20,426 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:10:20,426 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4692114406666242085555b1c90-f97c-47dc-b0a4-e59406bdfdc9 2011-08-05 10:10:20,428 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:10:39,084 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:10:39,084 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:10:39,194 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:10:39,194 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:10:39,194 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:10:39,195 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:10:39,295 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:10:39,312 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:10:39,312 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:10:39,313 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:10:39,326 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:10:39,326 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:10:39,326 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:10:39,326 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:10:39,326 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:10:39,326 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:10:39,327 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7400440240651230812df206a00-6b05-4615-a8d3-bfe491088d71 2011-08-05 10:10:39,328 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:11:25,129 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:11:25,129 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:11:25,221 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:11:25,221 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:11:25,221 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:11:25,222 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:11:25,229 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:11:25,240 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:11:25,240 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:11:25,241 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:11:25,252 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:11:25,252 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:11:25,252 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:11:25,252 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:11:25,252 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:11:25,252 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:11:25,253 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4087859716559766795202afed7-9e52-4c35-b9d8-fae847678429 2011-08-05 10:11:25,254 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:12:19,005 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:12:19,005 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:12:19,086 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:12:19,087 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:12:19,087 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:12:19,087 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:12:19,092 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:12:19,099 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:12:19,100 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:12:19,100 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:12:19,107 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:12:19,107 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:12:19,107 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:12:19,107 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:12:19,107 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:12:19,108 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:12:19,109 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4450065236542678048ac14eb43-384d-4fe7-bd17-2277ad02115f 2011-08-05 10:12:19,110 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:12:38,342 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:12:38,343 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:12:38,458 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:12:38,458 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:12:38,458 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:12:38,459 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:12:38,465 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:12:38,473 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:12:38,474 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:12:38,474 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:12:38,484 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:12:38,484 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:12:38,484 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:12:38,484 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:12:38,484 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:12:38,484 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:12:38,485 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5951804743331599058146d4a5-061e-44e8-987b-85dd85a44ecb 2011-08-05 10:12:38,486 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:13:04,974 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:13:04,975 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:13:05,078 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:13:05,078 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:13:05,079 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:13:05,079 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:13:05,083 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:13:05,089 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:13:05,090 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:13:05,090 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:13:05,096 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:13:05,096 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:13:05,096 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:13:05,096 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:13:05,096 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:13:05,096 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:13:05,097 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT70179254076823550847ffa847-140c-4342-bbf2-c3840e224707 2011-08-05 10:13:05,098 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:13:20,234 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:13:20,234 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:13:20,353 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:13:20,353 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:13:20,353 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:13:20,354 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:13:20,365 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:13:20,376 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:13:20,377 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:13:20,377 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:13:20,391 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:13:20,391 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:13:20,391 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:13:20,391 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:13:20,391 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:13:20,392 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:13:20,392 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT321005785385508327685a4a9fc-aecc-489a-858d-cc00d4cf011e 2011-08-05 10:13:20,394 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:13:52,333 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:13:52,333 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:13:52,408 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:13:52,408 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:13:52,408 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:13:52,409 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:13:52,414 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:13:52,422 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:13:52,423 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:13:52,423 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:13:52,429 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:13:52,429 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:13:52,429 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:13:52,429 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:13:52,429 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:13:52,429 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:13:52,429 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4567789669141052863c97f0ef7-d0a0-48de-90cf-7d68ca0709cb 2011-08-05 10:13:52,431 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:14:15,346 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:14:15,346 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:14:15,439 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:14:15,439 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:14:15,439 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:14:15,440 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:14:15,452 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:14:15,464 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:14:15,464 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:14:15,465 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:14:15,475 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:14:15,475 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:14:15,475 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:14:15,475 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:14:15,475 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:14:15,476 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:14:15,477 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT444214155937802648761892fef-1ce2-41d5-b258-009e740394f3 2011-08-05 10:14:15,480 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:14:54,254 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:14:54,254 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:14:54,358 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:14:54,358 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:14:54,358 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:14:54,359 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:14:54,365 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:14:54,377 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:14:54,377 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:14:54,378 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:14:54,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:14:54,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:14:54,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:14:54,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:14:54,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:14:54,385 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:14:54,386 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT45567081297254040836cd2bd26-927c-4445-b7e4-c36ab321c7f4 2011-08-05 10:14:54,387 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:15:21,968 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:15:21,968 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:15:22,073 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:15:22,073 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:15:22,073 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:15:22,074 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:15:22,084 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:15:22,090 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:15:22,091 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:15:22,091 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:15:22,097 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:15:22,097 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:15:22,097 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:15:22,097 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:15:22,098 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:15:22,098 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:15:22,112 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4238217630882808211bba8fae7-de75-4757-9d31-789da1c52fdb 2011-08-05 10:15:22,113 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:15:49,010 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:15:49,010 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:15:49,105 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:15:49,105 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:15:49,106 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:15:49,106 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:15:49,110 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:15:49,119 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:15:49,120 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:15:49,120 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:15:49,124 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:15:49,124 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:15:49,124 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:15:49,124 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:15:49,124 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:15:49,124 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:15:49,125 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT380383006679195800528392fb8-745d-4528-b0f6-6ddfefee8a2e 2011-08-05 10:15:49,126 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:16:07,263 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:16:07,274 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:16:07,364 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:07,364 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:16:07,364 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:16:07,365 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:07,383 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:07,389 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:07,390 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:07,390 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:07,396 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:16:07,396 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:16:07,396 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:16:07,396 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:16:07,396 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:16:07,396 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:16:07,397 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8285505721291527108a564b082-e87b-46cb-8247-427f5c339de1 2011-08-05 10:16:07,398 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:16:49,415 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:16:49,430 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:16:49,545 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:49,545 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:16:49,545 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:16:49,545 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:49,545 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:49,546 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:49,547 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:49,547 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:49,548 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:16:49,548 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:16:49,548 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:16:49,548 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:16:49,548 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:16:49,549 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:16:49,585 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT921419287979091835793497023-2bd9-4c3d-b48f-d8fad24dc78c 2011-08-05 10:16:49,587 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:16:51,167 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:16:51,167 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:16:51,346 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:51,346 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:16:51,346 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:16:51,346 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:51,347 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:51,350 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:51,351 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:51,351 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:51,353 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:16:51,353 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:16:51,353 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:16:51,353 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:16:51,353 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:16:51,353 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:16:51,353 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT90573527677767360125789bcbf-4d60-4a0b-97a2-11ded6baace0 2011-08-05 10:16:51,355 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:16:56,842 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:16:56,861 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:16:56,957 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:56,957 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:16:56,957 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:16:56,959 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:56,973 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:56,981 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:16:56,982 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:16:56,982 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:16:56,990 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:16:56,990 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:16:56,990 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:16:56,990 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:16:56,990 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:16:56,990 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:16:57,002 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT624616897387343447678bfb53a-b7ac-4e7e-8231-a17d9ec6154d 2011-08-05 10:16:57,004 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:17:33,589 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:17:33,602 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:17:33,708 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:17:33,708 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:17:33,708 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:17:33,708 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:17:33,709 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:17:33,710 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:17:33,711 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:17:33,711 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:17:33,712 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:17:33,712 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:17:33,712 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:17:33,712 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:17:33,712 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:17:33,712 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:17:33,728 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4316763485865791062e231a32c-dcef-429a-b44a-beaeb740131f 2011-08-05 10:17:33,729 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:17:35,830 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:17:35,830 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:17:35,924 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:17:35,924 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:17:35,924 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:17:35,925 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:17:35,931 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:17:35,937 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:17:35,938 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:17:35,938 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:17:35,944 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:17:35,944 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:17:35,944 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:17:35,944 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:17:35,944 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:17:35,945 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:17:35,949 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT9219098741386001056d7f1c830-c6ab-4d0a-aad5-31dc91efe37c 2011-08-05 10:17:35,951 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:18:18,629 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:18:18,649 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:18:18,740 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:18:18,740 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:18:18,740 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:18:18,741 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:18:18,751 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:18:18,755 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:18:18,756 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:18:18,756 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:18:18,760 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:18:18,760 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:18:18,760 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:18:18,760 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:18:18,760 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:18:18,760 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:18:18,760 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT818742202467430270983a0462d-f013-435d-ba53-81fa0f381070 2011-08-05 10:18:18,761 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:18:34,121 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:18:34,145 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:18:34,295 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:18:34,295 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:18:34,296 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:18:34,296 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:18:34,302 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:18:34,308 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:18:34,308 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:18:34,309 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:18:34,324 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:18:34,324 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:18:34,324 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:18:34,324 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:18:34,324 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:18:34,324 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:18:34,324 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8559365787372642966ab5a122d-eb0a-46e2-b725-1024dc224f76 2011-08-05 10:18:34,326 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:19:09,193 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:19:09,194 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:19:09,443 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:19:09,443 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:19:09,443 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:19:09,445 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:19:09,455 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:19:09,461 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:19:09,462 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:19:09,463 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:19:09,476 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:19:09,476 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:19:09,476 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:19:09,476 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:19:09,476 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:19:09,476 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:19:09,484 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT26474195767429651975bf1e4d9-a50c-4dc5-a5fe-24ea3d48e19d 2011-08-05 10:19:09,486 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0 2011-08-05 10:20:08,891 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629 2011-08-05 10:20:08,892 INFO [ ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011 2011-08-05 10:20:09,027 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:20:09,027 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating core metadata 2011-08-05 10:20:09,028 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading extended header 2011-08-05 10:20:09,028 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:20:09,043 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:20:09,045 INFO [ loci.formats.FormatHandler] ( Thread-29) Reading header 2011-08-05 10:20:09,046 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating original metadata 2011-08-05 10:20:09,046 INFO [ loci.formats.FormatHandler] ( Thread-29) Populating OME metadata 2011-08-05 10:20:09,047 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision 2011-08-05 10:20:09,047 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader 2011-08-05 10:20:09,047 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false 2011-08-05 10:20:09,047 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false 2011-08-05 10:20:09,047 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false 2011-08-05 10:20:09,047 INFO [ ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true 2011-08-05 10:20:09,067 DEBUG [ omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3407632872605848461e7331cfe-5e12-4e7a-9da7-9692f6d578d2 2011-08-05 10:20:09,069 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0