2012-06-08 14:19:12,672 INFO  [y.shoola.env.data.login.LoginServiceImpl] (entQueue-0) Logged onto OMERO at: howe.openmicroscopy.org.uk
User Name: user-5 -- Password: ***

2012-06-08 14:19:48,353 ERROR [opy.shoola.env.rnd.RenderingControlProxy] ( Thread-44) Initialize cachejava.lang.IllegalStateException: The CacheManager is not alive.
	at net.sf.ehcache.CacheManager.checkStatus(CacheManager.java:831)
	at net.sf.ehcache.CacheManager.addCache(CacheManager.java:650)
	at org.openmicroscopy.shoola.env.cache.CacheServiceImpl.createCache(CacheServiceImpl.java:109)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.initializeCache(RenderingControlProxy.java:335)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.renderUncompressed(RenderingControlProxy.java:567)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1570)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1554)
	at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.render(PixelsServicesFactory.java:491)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.renderImage(OmeroImageServiceImpl.java:599)
	at org.openmicroscopy.shoola.env.data.views.calls.ImageRenderer$1.doCall(ImageRenderer.java:87)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Initialize cachejava.lang.IllegalStateException: The CacheManager is not alive.
	at net.sf.ehcache.CacheManager.checkStatus(CacheManager.java:831)
	at net.sf.ehcache.CacheManager.addCache(CacheManager.java:650)
	at org.openmicroscopy.shoola.env.cache.CacheServiceImpl.createCache(CacheServiceImpl.java:109)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.initializeCache(RenderingControlProxy.java:335)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.renderUncompressed(RenderingControlProxy.java:567)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1570)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1554)
	at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.render(PixelsServicesFactory.java:491)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.renderImage(OmeroImageServiceImpl.java:599)
	at org.openmicroscopy.shoola.env.data.views.calls.ImageRenderer$1.doCall(ImageRenderer.java:87)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Exception in thread "Thread-44"

2012-06-08 14:20:28,245 ERROR [y.shoola.agents.imviewer.ProjectionSaver] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot project the image.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5334)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.projectImage(OmeroImageServiceImpl.java:920)
	at org.openmicroscopy.shoola.env.data.views.calls.ProjectionSaver$2.doCall(ProjectionSaver.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1831)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5312)
	... 9 more
Caused by: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1827)
	... 10 more
Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot project the image.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5334)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.projectImage(OmeroImageServiceImpl.java:920)
	at org.openmicroscopy.shoola.env.data.views.calls.ProjectionSaver$2.doCall(ProjectionSaver.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1831)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5312)
	... 9 more
Caused by: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1827)
	... 10 more
Exception in thread "AWT-EventQueue-0"

2012-06-08 14:47:09,869 INFO  [       ome.formats.importer.ImportConfig] ( Thread-52) OMERO Version: 4.3.3-3023-3bbdef2-ice33-b171
2012-06-08 14:47:09,896 INFO  [       ome.formats.importer.ImportConfig] ( Thread-52) Bioformats version: 4.4-DEV revision: 9239046 date: 8 June 2012
2012-06-08 14:47:14,431 INFO  [              loci.formats.FormatHandler] ( Thread-52) Reading LSM metadata for series #0
2012-06-08 14:47:15,009 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-52) File format: Zeiss Laser-Scanning Microscopy
2012-06-08 14:47:15,010 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-52) Base reader: loci.formats.in.ZeissLSMReader
2012-06-08 14:47:15,010 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-52) Metadata only import? false
2012-06-08 14:47:15,010 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-52) Archiving enabled? false
2012-06-08 14:47:15,010 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-52) Container metadata only import? false
2012-06-08 14:47:15,010 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-52) Reader is not of HCS domain, use metafile: true
2012-06-08 14:47:15,033 DEBUG [              omero.util.TempFileManager] ( Thread-52) Added file /Users/scott/omero/tmp/omero_scott/58320@omx-mbp-23554.local/ORIGINAL_METADATA_TXT6735885556253030924e5c4b8d0-0907-4da8-b0cc-ab9dc7b5df0b
2012-06-08 14:47:15,038 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-52) Unknown target class for LSID: Image:0
2012-06-08 14:48:39,983 ERROR [opy.shoola.env.rnd.RenderingControlProxy] ( Thread-67) Initialize cachejava.lang.IllegalStateException: The CacheManager is not alive.
	at net.sf.ehcache.CacheManager.checkStatus(CacheManager.java:831)
	at net.sf.ehcache.CacheManager.addCache(CacheManager.java:650)
	at org.openmicroscopy.shoola.env.cache.CacheServiceImpl.createCache(CacheServiceImpl.java:109)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.initializeCache(RenderingControlProxy.java:335)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.renderUncompressed(RenderingControlProxy.java:567)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1570)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1554)
	at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.render(PixelsServicesFactory.java:491)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.renderImage(OmeroImageServiceImpl.java:599)
	at org.openmicroscopy.shoola.env.data.views.calls.ImageRenderer$1.doCall(ImageRenderer.java:87)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Initialize cachejava.lang.IllegalStateException: The CacheManager is not alive.
	at net.sf.ehcache.CacheManager.checkStatus(CacheManager.java:831)
	at net.sf.ehcache.CacheManager.addCache(CacheManager.java:650)
	at org.openmicroscopy.shoola.env.cache.CacheServiceImpl.createCache(CacheServiceImpl.java:109)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.initializeCache(RenderingControlProxy.java:335)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.renderUncompressed(RenderingControlProxy.java:567)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1570)
	at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1554)
	at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.render(PixelsServicesFactory.java:491)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.renderImage(OmeroImageServiceImpl.java:599)
	at org.openmicroscopy.shoola.env.data.views.calls.ImageRenderer$1.doCall(ImageRenderer.java:87)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Exception in thread "Thread-67"

2012-06-08 14:48:54,884 ERROR [y.shoola.agents.imviewer.ProjectionSaver] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot project the image.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5334)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.projectImage(OmeroImageServiceImpl.java:920)
	at org.openmicroscopy.shoola.env.data.views.calls.ProjectionSaver$2.doCall(ProjectionSaver.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1831)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5312)
	... 9 more
Caused by: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1827)
	... 10 more
Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot project the image.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5334)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.projectImage(OmeroImageServiceImpl.java:920)
	at org.openmicroscopy.shoola.env.data.views.calls.ProjectionSaver$2.doCall(ProjectionSaver.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1831)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5312)
	... 9 more
Caused by: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1827)
	... 10 more
Exception in thread "AWT-EventQueue-0"