#13283
|
RFE:: Improve cmd line listusers output
|
Usability
|
ux@…
|
minor
|
|
?
|
#13279
|
ome.conditions.TryAgain
|
Services
|
|
major
|
|
?
|
#13278
|
ome.conditions.OptimisticLockException
|
Services
|
|
major
|
|
?
|
#13276
|
Clean up guest connections from web
|
Web
|
atarkowska
|
minor
|
|
?
|
#13274
|
RFE: Unsupported Fortmat (.ovl)
|
Bio-Formats
|
|
minor
|
|
?
|
#13271
|
Olympus ScanR fails to import
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13270
|
Bug: images not matching with well placement
|
Bio-Formats
|
dgault
|
major
|
|
?
|
#13268
|
Bug: "Apply" button seems to ignore port change for server
|
Insight
|
dlindner
|
minor
|
|
?
|
#13265
|
ValidationException when inserting Pixels object
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13264
|
BUG: Ordering in Shares
|
Web
|
wmoore
|
major
|
|
?
|
#13263
|
BUG: SocketException, too many open files
|
Insight
|
dlindner
|
minor
|
|
?
|
#13260
|
Bug: omero ldap create hung
|
ApplicationServer
|
|
minor
|
|
?
|
#13259
|
OMERO.insight-ij plugin - charToByteConverterClass warning
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13252
|
Unexpected behavior of querieng MapAnnotations
|
API
|
jamoore
|
major
|
|
?
|
#13251
|
Bug: cleanse fails if there is a null ManagedRepository
|
OmeroPy
|
cblackburn
|
major
|
|
?
|
#13249
|
BUG: Requested object ID: null
|
Insight
|
dlindner
|
minor
|
|
?
|
#13245
|
BUG: Misleading error message for OOM
|
Insight
|
dlindner
|
minor
|
|
?
|
#13244
|
ImspectorPro files only open a single frame
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13242
|
Bug: Insight create user UI requires a group allocated, but UI doesn't show it as required
|
Insight
|
jburel
|
trivial
|
|
?
|
#13240
|
BUG: Import dialog: New Dataset orphaned
|
Insight
|
dlindner
|
minor
|
|
?
|
#13236
|
Bug: stack trace in converting to PNG
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13235
|
Bug: Errors in Indexer log
|
Services
|
|
major
|
|
?
|
#13234
|
Bug: duplicate key value violates unique constraint "experimenter_omename_key"
|
General
|
jamoore
|
minor
|
|
?
|
#13231
|
RFE: do not ignore image name on import
|
Import
|
jamoore
|
major
|
|
?
|
#13228
|
Bug: "No Image" thumb rendered at aspect of underlying image
|
Web
|
wmoore
|
minor
|
|
?
|
#13227
|
Strange SVG geometry in Insight
|
Insight
|
jburel
|
minor
|
|
?
|
#13222
|
ImageJ Plugin - Image crop not working with Virtual stack
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13219
|
Bug: Web rendering settings fails with this artificial image
|
Web
|
wmoore
|
minor
|
|
?
|
#13216
|
BUG: ConstraintViolationException; image annotation
|
Insight
|
dlindner
|
minor
|
|
?
|
#13215
|
BUG: Network down exceptions
|
Insight
|
dlindner
|
minor
|
|
?
|
#13213
|
BUG: NPE getSelectedGroup
|
Insight
|
dlindner
|
minor
|
|
?
|
#13212
|
RFE: thumbnail context menu
|
Web
|
wmoore
|
trivial
|
|
?
|
#13211
|
Channel offsets surprise
|
Scripting
|
wmoore
|
minor
|
|
?
|
#13208
|
BUG: Java Gateway, sudo connections fail
|
Insight
|
dlindner
|
minor
|
|
?
|
#13204
|
BUG: ND2 files with wrong series and time points
|
Bio-Formats
|
|
minor
|
|
?
|
#13203
|
ZeissCZIReader - Unknown IlluminationType
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13198
|
ApiUsageException: Cannot find unique user DistinguishedName
|
Services
|
|
major
|
|
?
|
#13193
|
ResourceError: Error instantiating pixel buffer
|
General
|
|
critical
|
|
?
|
#13192
|
BUG: multi-z images tile loading
|
Services
|
pwalczysko
|
critical
|
|
?
|
#13191
|
ReadOnlyGroupSecurityViolation: Cannot link
|
General
|
|
major
|
|
?
|
#13190
|
BUG: Image thumbnail selection, crash
|
Insight
|
dlindner
|
minor
|
|
?
|
#13189
|
BUG: NPE in Importer UI
|
Insight
|
dlindner
|
minor
|
|
?
|
#13188
|
Bug: Additional tiling defects
|
Bio-Formats
|
|
minor
|
|
?
|
#13185
|
RFE: option to Group/Ungroup files at the Import stage in Insight
|
Insight
|
jburel
|
minor
|
|
?
|
#13184
|
RFE: replace deprecated Hibernate annotations
|
ORM
|
jamoore
|
minor
|
|
?
|
#13178
|
BUG: Unsupported Compression Type 1145656920 for AVIReader
|
Bio-Formats
|
|
minor
|
|
?
|
#13174
|
APLReader - parsing of mtb file
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13172
|
RFE: Guard agains duplicate tagnames
|
Client
|
|
major
|
|
?
|
#13170
|
CellSensReader - Image banding and bad pixel data
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13168
|
BUG: Bioformats Exporter not opening Mac OSX Java 8
|
Bio-Formats
|
|
minor
|
|
?
|
#13166
|
RFE: allow creation of ROIs from CLI
|
ROIs
|
jamoore
|
minor
|
|
?
|
#13163
|
BUG: Paste rendering settings
|
Insight
|
dlindner
|
minor
|
|
?
|
#13162
|
BUG: export as ome.tiff - masks
|
Services
|
|
critical
|
|
?
|
#13159
|
Review permissions for graph operations from CLI
|
Client
|
cblackburn
|
major
|
|
?
|
#13156
|
BUG: export as ome.tiff
|
Services
|
|
critical
|
|
?
|
#13155
|
BUG: No lock found
|
Insight
|
dlindner
|
minor
|
|
?
|
#13153
|
BUG: synchronous actions in Web
|
Services
|
|
major
|
|
?
|
#13152
|
Bug: Image looks different between BF and OMERO
|
Import
|
jburel
|
minor
|
|
?
|
#13144
|
Bug: Minimal Tiff Reader - Index out of bounds exception
|
Bio-Formats
|
|
minor
|
|
?
|
#13138
|
BUG: NoObjectFactoryException omero::model::Rectangle
|
Insight
|
dlindner
|
major
|
|
?
|
#13136
|
Add support for Berthold Nightshade data
|
Bio-Formats
|
|
major
|
|
?
|
#13123
|
Andor/FluoviewReader - Incorrect unit conversion
|
Bio-Formats
|
dgault
|
minor
|
|
?
|
#13121
|
BUG: cannot delete Shape
|
Insight
|
bramalingam
|
minor
|
|
?
|
#13120
|
Add support for RayScan .rec data
|
Bio-Formats
|
dgault
|
major
|
|
?
|
#13118
|
Bug: QA16933 - error handling on server down
|
Web
|
atarkowska
|
minor
|
|
?
|
#13117
|
Web should better handle request when omero server is unavailable
|
Web
|
atarkowska
|
major
|
|
?
|
#13116
|
BUG: OptimisticLockException on import
|
Insight
|
dlindner
|
minor
|
|
?
|
#13114
|
RFE: Add Refresh Thumbnails/Metadata button
|
Insight
|
jburel
|
critical
|
|
?
|
#13110
|
BUG: NoClassDefFoundError PieDataset
|
Insight
|
dlindner
|
minor
|
|
?
|
#13106
|
TiffReader: Does not handle YCbCr conversion
|
Bio-Formats
|
|
minor
|
|
?
|
#13105
|
BUG: Loss of interaction with image after computer sleep
|
Insight
|
jburel
|
major
|
|
?
|
#13102
|
BUG: Insight Dock icon lost
|
Insight
|
jburel
|
minor
|
|
?
|
#13101
|
BUG: SecurityViolation: 2 methods active
|
Insight
|
dlindner
|
minor
|
|
?
|
#13100
|
BUG: Web Rendering Settings - entered number not updating
|
Web
|
wmoore
|
major
|
|
?
|
#13098
|
BUG: JPEG Reader (Could not determine subsample type)
|
Bio-Formats
|
|
minor
|
|
?
|
#13096
|
omero.web.apps should be unique
|
Web
|
atarkowska
|
major
|
|
?
|
#13093
|
Bug: Polygon switch tool
|
Insight
|
jburel
|
minor
|
|
?
|
#13087
|
BUG: Freezes at import of archived
|
Insight
|
jburel
|
major
|
|
?
|
#13086
|
BUG: Archived files multi-import
|
Insight
|
jburel
|
major
|
|
?
|
#13084
|
BUG: OutOfMemoryError IMetadata.getTaggedObjectsCount()
|
ApplicationServer
|
jamoore
|
major
|
|
?
|
#13080
|
Bug: Cannot view data in system group
|
Web
|
wmoore
|
major
|
|
?
|
#13077
|
Images not linked directly to Instruments
|
Model
|
jburel
|
minor
|
|
?
|
#13075
|
Bug: importing many files with auto close leaks memory
|
Import
|
jamoore
|
critical
|
|
?
|
#13072
|
RFE: Selection of General pane
|
Web
|
wmoore
|
minor
|
|
?
|
#13071
|
BUG: Remove user from last group
|
Insight
|
dlindner
|
minor
|
|
?
|
#13064
|
RFE: New Reader for Picoquant HydraHarp (.pt3)
|
Bio-Formats
|
|
minor
|
|
?
|
#13060
|
Cannot find unique user DistinguishedName
|
Services
|
atarkowska
|
minor
|
|
?
|
#13056
|
BUG: RFE Browsing through planes
|
Insight
|
dlindner
|
minor
|
|
?
|
#13053
|
Bug: Password Reset is not an Error
|
Web
|
atarkowska
|
minor
|
|
?
|
#13049
|
SaveArray without Validation Exception
|
Services
|
jamoore
|
major
|
|
?
|
#13048
|
Update permissions async
|
WebAdmin
|
wmoore
|
critical
|
|
?
|
#13047
|
RFE: Misformatting of table
|
Web
|
wmoore
|
major
|
|
?
|
#13043
|
BUG: Share and Projections
|
Web
|
wmoore
|
major
|
|
?
|
#13041
|
RFE: CLI can have trouble introspecting into abstract types
|
Client
|
cblackburn
|
minor
|
|
?
|
#13033
|
Service is not being closed OverUsageException
|
Insight
|
jamoore
|
critical
|
|
?
|
#13030
|
Newly added omero prop cause SecurityViolation
|
Services
|
atarkowska
|
major
|
|
?
|
#13028
|
Bug: Email bounce / address problems should not be a server error
|
WebAdmin
|
atarkowska
|
minor
|
|
?
|
#13027
|
Bug: Windows user at UCL triggered AWT exception
|
Insight
|
jburel
|
minor
|
|
?
|
#13015
|
Add support for EasyRatioPro format
|
Bio-Formats
|
|
major
|
|
?
|
#13014
|
Bug: Memory Management issues in OMERO-IJ Plugin for Big Images
|
Insight
|
jburel
|
minor
|
|
?
|
#13011
|
Webgateway cache missing quality
|
Web
|
atarkowska
|
minor
|
|
?
|
#13010
|
BUG: Thumb is None
|
Web
|
wmoore
|
major
|
|
?
|
#13008
|
Bug: missing intensity results data?
|
Insight
|
jburel
|
minor
|
|
?
|
#13006
|
RFE: better error detail on save failure
|
Insight
|
jburel
|
minor
|
|
?
|
#13004
|
RFE : Optimise performance for reading tiles in big Images
|
Bio-Formats
|
|
minor
|
|
?
|
#13001
|
Bug: new tag set gets grayed out
|
Insight
|
jburel
|
minor
|
|
?
|
#12992
|
Download as JPEG
|
Services
|
|
major
|
|
?
|
#12991
|
Public user should take priority on public pages
|
Web
|
atarkowska
|
major
|
|
?
|
#12990
|
Cannot delete Share Comment
|
General
|
|
critical
|
|
?
|
#12980
|
Bug: web Download zip > 2GB
|
Web
|
wmoore
|
major
|
|
?
|
#12979
|
RFE: improve error message for CLI export onto existing file
|
OmeroPy
|
cblackburn
|
minor
|
|
?
|
#12966
|
RFE: warn when unlinking at chown and Move - Insight
|
Insight
|
jburel
|
critical
|
|
?
|
#12961
|
RFE: Allow user to change mind when choosing group (change group, web)
|
Web
|
wmoore
|
minor
|
|
?
|
#12956
|
BUG:Failing LDAP request crashed Insight
|
from QA
|
dlindner
|
minor
|
|
?
|
#12955
|
BUG:Measurementtool problems with sdt file
|
from QA
|
dlindner
|
minor
|
|
?
|
#12947
|
Insight cache defult group
|
from QA
|
jburel
|
minor
|
|
?
|
#12946
|
RFE: clarify downgrade-to-private workflow
|
Insight
|
jburel
|
minor
|
|
?
|
#12945
|
RFE: show error message after failed chmod
|
Insight
|
jburel
|
minor
|
|
?
|
#12938
|
Text image file support
|
Bio-Formats
|
|
minor
|
|
?
|
#12937
|
RFE: avoid needless group click on move
|
Web
|
wmoore
|
minor
|
|
?
|
#12923
|
RFE: Improve handling of "User 452 is not a member of group 106" security violation from server
|
Web
|
wmoore
|
minor
|
|
?
|
#12922
|
Bug: PG ERROR printed on invalid UTF-8
|
ORM
|
|
minor
|
|
?
|
#12917
|
RFE: Display Group ID in clients
|
Insight
|
jburel
|
minor
|
|
?
|
#12916
|
RFE - getting map annotations using Matlab toolkit
|
General
|
bramalingam
|
minor
|
|
?
|
#12915
|
RFE: Clearer indication of script failure
|
Insight
|
jburel
|
minor
|
|
?
|
#12914
|
Bug: negative script parameters
|
Web
|
wmoore
|
minor
|
|
?
|
#12909
|
BUG:Feedback 11099 - SocketException
|
Insight
|
jburel
|
minor
|
|
?
|
#12908
|
Scripts 'Password' parameter
|
Scripting
|
wmoore
|
major
|
|
?
|
#12907
|
Bug: C++ cmake option consistency
|
Bio-Formats
|
rleigh
|
minor
|
|
?
|
#12906
|
RFE: Export of metadata within file names
|
Services
|
|
critical
|
|
?
|
#12898
|
Extend Bio-Formats Macro Extensions to extract Channel name,etc.
|
Bio-Formats
|
|
minor
|
|
?
|
#12897
|
RFE: parse metadata from U. Fribourg 2-photon data
|
Bio-Formats
|
|
minor
|
|
?
|
#12892
|
Bug: Handle CmdError on load_original_metadata
|
Web
|
wmoore
|
major
|
|
?
|
#12891
|
Bug: InternalException on admin search
|
Services
|
|
major
|
|
?
|
#12887
|
uncategorized SQLException for SQL [select ome_nextval(?,?)];
|
Security
|
atarkowska
|
critical
|
|
?
|
#12882
|
RFE: more information about login failures
|
Insight
|
jburel
|
minor
|
|
?
|
#12873
|
Bug: plate Run move
|
Web
|
wmoore
|
major
|
|
?
|
#12872
|
RFE: Warning on deletion of Attachments
|
Web
|
wmoore
|
major
|
|
?
|
#12863
|
BUG: Insight delete stale comments, ratings, MAnn
|
Insight
|
jburel
|
minor
|
|
?
|
#12851
|
BUG:OmeroDataService, MemoryLimitException
|
Insight
|
dlindner
|
minor
|
|
?
|
#12845
|
RFE: file type Metamorph
|
Import
|
jburel
|
minor
|
|
?
|
#12844
|
BUG:NPE Importer
|
from QA
|
dlindner
|
minor
|
|
?
|
#12841
|
Bug: Imspector channels detected incorrectly
|
Bio-Formats
|
|
major
|
|
?
|
#12838
|
BUG:JDK bug in GTKFileChooserUI
|
Insight
|
dlindner
|
minor
|
|
?
|
#12836
|
Read lookup tables from Imspector .msr files
|
Bio-Formats
|
|
major
|
|
?
|
#12830
|
Auto-truncate names in tree
|
Web
|
wmoore
|
major
|
|
?
|
#12815
|
Bug: kymograph script can't attach
|
Scripting
|
wmoore
|
minor
|
|
?
|
#12813
|
BUG: Thumbnail Figure empty Dataset
|
Web
|
wmoore
|
major
|
|
?
|
#12812
|
BUG: Windows servicename length is very limited on W2012-R2
|
General
|
|
minor
|
|
?
|
#12788
|
BUG: Import failure on trout-latest - Unable to handle target
|
Insight
|
jburel
|
major
|
|
?
|
#12781
|
Bug: CLI import to a dataset in a different group to current fails.
|
Import
|
cblackburn
|
critical
|
|
?
|
#12780
|
BUG: Insight Import View in Data Browser doesn't work
|
Import
|
|
minor
|
|
?
|
#12778
|
BUG: webclient/?show=image-XXX URLs don't work when the image is on the 2nd+ page of a dataset
|
Web
|
wmoore
|
major
|
|
?
|
#12768
|
Bug: OSX Crash Dialogue on saveout from ROI edit
|
Insight
|
jburel
|
minor
|
|
?
|
#12767
|
Bug: OSX Crash Dialogue on saveout from ROI edit
|
Insight
|
jburel
|
minor
|
|
?
|
#12764
|
Bug: save rename change
|
Insight
|
jburel
|
minor
|
|
?
|
#12763
|
Bug: 500 in web uncaught on user deactivation
|
Web
|
wmoore
|
major
|
|
?
|
#12749
|
Bug: move button becomes inconsistently deselected
|
Insight
|
jburel
|
minor
|
|
?
|
#12740
|
Bug: Miscellaneous OMETiffReader defects
|
Bio-Formats
|
|
minor
|
|
?
|
#12731
|
Update L2DReader to support Li-Cor Odyssey data
|
Bio-Formats
|
|
major
|
|
?
|
#12730
|
Add support for Tissuegnostics data
|
Bio-Formats
|
|
major
|
|
?
|
#12721
|
RFE: Improve graphs error reporting in Web
|
Web
|
wmoore
|
minor
|
|
?
|
#12720
|
RFE: Tab Completion on users for group membership in web admin
|
Web
|
wmoore
|
minor
|
|
?
|
#12710
|
BUG: Search raised and error Feedback 10437
|
from QA
|
atarkowska
|
minor
|
|
?
|
#12706
|
Bug: SecurityViolation when removed from group
|
Web
|
wmoore
|
major
|
|
?
|
#12691
|
RFE: support LargeZips
|
Web
|
web-team@…
|
major
|
|
?
|
#12689
|
Bug: tree/metadata sync with runs and wells
|
Insight
|
jburel
|
minor
|
|
?
|
#12682
|
Bug: DatabaseBusyException
|
Insight
|
jburel
|
minor
|
|
?
|
#12674
|
Bug: absurd Insight import time
|
Insight
|
jburel
|
minor
|
|
?
|
#12664
|
BUG: Avatar error
|
Web
|
wmoore
|
major
|
|
?
|
#12660
|
RFE: Alpha-blended overlay of binary segmentation on images
|
Client
|
|
minor
|
|
?
|
#12655
|
BUG:TableLayout ArrayIndexOutOfBoundsException
|
Insight
|
dlindner
|
minor
|
|
?
|
#12642
|
BUG: Export as OME-TIFF broken
|
Export
|
jburel
|
blocker
|
|
?
|
#12621
|
BUG: BlitzGateway,getSession() fails if initialised using client_obj
|
API
|
|
minor
|
|
?
|
#12599
|
Bug: OMERO clients report BIT pixel type as uint8
|
Bio-Formats
|
|
minor
|
|
?
|
#12595
|
Bug: Very confusing multi-selection in project browser
|
Insight
|
jburel
|
minor
|
|
?
|
#12594
|
RFE: Allow multi-paste of image link
|
Insight
|
jburel
|
minor
|
|
?
|
#12593
|
Bug: Insight projects browser icons not updating with thumbnails changes
|
Insight
|
jburel
|
minor
|
|
?
|
#12586
|
Bug: Insight context menu enabling for new containers
|
Insight
|
jburel
|
minor
|
|
?
|
#12584
|
Add support for .oct files
|
Bio-Formats
|
|
major
|
|
?
|
#12580
|
Bug: projected images share objective settings
|
General
|
|
minor
|
|
?
|
#12573
|
BUG: QA 9547 - handle timed out session
|
from QA
|
jburel
|
minor
|
|
?
|
#12567
|
BUG: plate not rendering fully in Windows 8 IE10
|
Web
|
web-team@…
|
blocker
|
|
?
|
#12545
|
Bug: DB model for ROI to Image does not match XML schema
|
Model
|
jamoore
|
major
|
|
?
|
#12542
|
RFE: distinguish system / owner users in tree view
|
Insight
|
jburel
|
minor
|
|
?
|
#12541
|
ICE_CONFIG environment variable is ignored by omero shell
|
OmeroPy
|
|
minor
|
|
?
|
#12540
|
Bug: curious group owner creation behavior
|
Insight
|
jburel
|
minor
|
|
?
|
#12535
|
Bug: Unsupported conversion to rtype
|
from QA
|
atarkowska
|
minor
|
|
?
|
#12515
|
BUG: Prev/next page links do not adapt to filtered results
|
Web
|
web-team@…
|
minor
|
|
?
|
#12483
|
Add support for MetaSystems .vsi data
|
Bio-Formats
|
|
major
|
|
?
|
#12473
|
Channel should model separate probe/fluor metadata attributes
|
Specification
|
rleigh
|
minor
|
|
?
|
#12467
|
RFE: Server foregrounding option improvements
|
Deployment
|
|
major
|
|
?
|
#12464
|
Bug: server start-up confusing if repository bean creation fails
|
Services
|
jamoore
|
minor
|
|
?
|
#12459
|
Bug: createImageFromNumpySeq must use tiling
|
OmeroPy
|
wmoore
|
critical
|
|
?
|
#12442
|
Bug: hql size function syntax error
|
General
|
|
minor
|
|
?
|
#12439
|
Bug: RepositoryInfo broken?
|
API
|
|
major
|
|
?
|
#12438
|
BUG: Hang in import process - import part of .lei
|
Insight
|
jburel
|
major
|
|
?
|
#12432
|
Bug: "bin/omero load -k" doesn't exit to shell in certain cases
|
Client
|
|
major
|
|
?
|
#12431
|
RFE: set umask in omero web config
|
Web
|
web-team@…
|
minor
|
|
?
|
#12428
|
RFE: make script help hyperlinks actually live
|
Web
|
web-team@…
|
minor
|
|
?
|
#12427
|
RFE: Clarify compression setting.
|
Insight
|
jburel
|
minor
|
|
?
|
#12419
|
BUG: Quick change of selection web
|
Web
|
web-team@…
|
major
|
|
?
|
#12418
|
RFE: nicer error from Insight for out of space when saving files
|
Insight
|
jburel
|
minor
|
|
?
|
#12404
|
Bug: insight "cannot cancel script" error
|
Insight
|
jburel
|
minor
|
|
?
|
#12401
|
BUG: First-time LDAP login not working in Insight
|
from QA
|
jburel
|
minor
|
|
?
|
#12400
|
Bug: xsd-fu is using an ancient version of generateDS
|
General
|
|
minor
|
|
?
|
#12387
|
BUG:Figure generation PDF
|
Search
|
wmoore
|
minor
|
|
?
|
#12385
|
Unnecessary thread safety from Vector?
|
Bio-Formats
|
mtbcarroll
|
minor
|
|
?
|
#12382
|
Bug: SecurityViolation - updating thumbnail not allowed
|
Web
|
wmoore
|
minor
|
|
?
|
#12376
|
RFE: Lucene to index Original Metadata
|
Search
|
jamoore
|
critical
|
|
?
|
#12364
|
BUG:File on tape
|
from QA
|
jburel
|
minor
|
|
?
|
#12350
|
RFE: Cannot find search results
|
Insight
|
dlindner
|
critical
|
|
?
|
#12345
|
LockTimeout on loading metadata
|
from QA
|
atarkowska
|
minor
|
|
?
|
#12334
|
RFE: Windows Service bin/omero admin diagostics and OMERO_TEMPDIR
|
Deployment
|
jamoore
|
minor
|
|
?
|
#12315
|
Bug: DropBox can't remove temporary files on Windows
|
Client
|
spli
|
major
|
|
?
|
#12313
|
Bug: OME-TIFF export with XML annotation
|
Export
|
jburel
|
critical
|
|
?
|
#12312
|
Bug: password reset assumes root user ID of 0
|
General
|
|
minor
|
|
?
|
#12299
|
RFE: Delete double linked image warning
|
Web
|
atarkowska
|
major
|
|
?
|
#12297
|
Bug: Time zone
|
Web
|
atarkowska
|
major
|
|
?
|
#12292
|
RFE: reserved column names
|
ORM
|
jamoore
|
minor
|
|
?
|
#12277
|
RFE: Add ImageJ logo to Insight running as ImageJ plugin
|
Insight
|
jburel
|
minor
|
|
?
|
#12275
|
Check filesystem sanitization of template paths
|
Import
|
jamoore
|
minor
|
|
?
|
#12265
|
RFE: reduce number of directories for uploaded files
|
QA
|
atarkowska
|
minor
|
|
?
|
#12260
|
RFE: database script upgrade schema comparison
|
Model
|
jamoore
|
minor
|
|
?
|
#12246
|
Bug: Dialogue boxes always appear on primary display
|
Insight
|
jburel
|
minor
|
|
?
|
#12245
|
Add support for Incucyte data
|
Bio-Formats
|
|
major
|
|
?
|
#12243
|
RFE: increase pagination options for CLI commands
|
Services
|
jamoore
|
minor
|
|
?
|
#12240
|
Birdeyeview bug on IE
|
Web
|
web-team@…
|
minor
|
|
?
|
#12237
|
Bug: LIFReader: Original metadata regression from 4.4
|
Bio-Formats
|
jburel
|
minor
|
|
?
|
#12234
|
Bug: Import directory with no images fails
|
Insight
|
jburel
|
minor
|
|
?
|
#12231
|
BUG: OMEROweb_request.log errors on nightshade
|
Web
|
web-team@…
|
major
|
|
?
|
#12224
|
BUG: put group off display & import
|
Insight
|
jburel
|
minor
|
|
?
|
#12215
|
Bug: can't see file paths popup under Linux
|
Insight
|
jburel
|
minor
|
|
?
|
#12207
|
Bug: render_response and render_response_admin fail if given an HttpResponse
|
Web
|
web-team@…
|
minor
|
|
?
|
#12199
|
Bug: Script List param defaults
|
Web
|
|
major
|
|
?
|
#12186
|
Bug: bin/omero db script hang
|
Client
|
|
major
|
|
?
|
#10930
|
Arrange Lucene index better for multiply hashed files
|
Search
|
|
minor
|
|
?
|
#10924
|
RFE: deprecation warnings
|
General
|
|
minor
|
|
?
|
#10922
|
Bug: Size of tag/comment/text annotations is unlimited
|
API
|
|
minor
|
|
?
|
#10919
|
Detect omero.fslite.path_rules breaking changes
|
OmeroFs
|
mtbcarroll
|
minor
|
|
?
|
#10906
|
RFE: IQuery should respect Parameters.exp()
|
Services
|
|
minor
|
|
?
|
#10903
|
Add support for Ariol data
|
Bio-Formats
|
|
major
|
|
?
|
#10885
|
UTF-8 text columns require extra index
|
ORM
|
|
critical
|
|
?
|
#10880
|
RFE: Verify that ImportContainer.getReader() is consulted on import
|
Import
|
jamoore
|
major
|
|
?
|
#10841
|
BUG: Export as jpeg
|
Services
|
jamoore
|
major
|
|
?
|
#10835
|
RFE: chdir on insight launch from CLI
|
Insight
|
jburel
|
minor
|
|
?
|
#10830
|
Bug: Import CLI - permissions
|
Import
|
cblackburn
|
major
|
|
?
|
#10818
|
Bug: Graphical layout issues with java7/windows8
|
Insight
|
jburel
|
minor
|
|
?
|
#10815
|
NetworkChecker & HTTP_PROXY
|
General
|
|
minor
|
|
?
|
#10814
|
RFE: Export - downgrade file filter
|
Insight
|
jburel
|
minor
|
|
?
|
#10813
|
Closeable import processes
|
Services
|
|
critical
|
|
?
|
#10812
|
FS perf. optimizations to consider
|
Performance
|
|
minor
|
|
?
|
#10810
|
Refactor ImportCandidates into Bio-Formats
|
General
|
|
major
|
|
?
|
#10809
|
FS delete finalization
|
General
|
|
minor
|
|
?
|
#10808
|
Convenience methods/test for Repository API
|
API
|
|
minor
|
|
?
|
#10797
|
Memoizer exception handling
|
General
|
jamoore
|
major
|
|
?
|
#10792
|
Performance numbers for FS lite
|
General
|
|
minor
|
|
?
|
#10787
|
Bug: orphaned wells on gretzky
|
Insight
|
jburel
|
minor
|
|
?
|
#10768
|
RFE: File chooser during downgrade
|
Insight
|
jburel
|
minor
|
|
?
|
#10765
|
Background task to re-check checksums
|
OmeroFs
|
jamoore
|
major
|
|
?
|
#10763
|
Bug: Creation of zipfile/ome-tiff attachments by file export
|
Web
|
web-team@…
|
minor
|
|
?
|
#10754
|
Validation checksums for file downloads
|
OmeroFs
|
jamoore
|
minor
|
|
?
|
#10744
|
RFE: raw file store empty file semantics
|
Services
|
|
minor
|
|
?
|
#10731
|
Bug: Display of long other XML annotation
|
Insight
|
jburel
|
minor
|
|
?
|
#10715
|
BUG: ROIs - Insight-Web - different appearance and IDs
|
Insight
|
jburel
|
minor
|
|
?
|
#10704
|
Stacktrace emdb OMERO web
|
Web
|
wmoore
|
minor
|
|
?
|
#10702
|
RFE: Rationalize logging configuration
|
General
|
|
major
|
|
?
|
#10694
|
Editing of annotations not asynch
|
Insight
|
jburel
|
major
|
|
?
|
#10693
|
Refactor OriginalFile for repositories and directories
|
OmeroFs
|
jamoore
|
minor
|
|
?
|
#10692
|
Review checksum comparisons
|
OmeroFs
|
jamoore
|
minor
|
|
?
|
#10691
|
Adjust code generator so that enumeration values appear in ome.model.*
|
Model
|
|
minor
|
|
?
|
#10690
|
RFE: better handling of omero.group=-1 in certain write situations
|
Services
|
|
major
|
|
?
|
#10679
|
BUG: History calendar Web
|
Web
|
wmoore
|
minor
|
|
?
|
#10672
|
Big image import failure on howe
|
Import
|
|
minor
|
|
?
|
#10670
|
Improve exception handling when thumbnail size is too small
|
Services
|
|
minor
|
|
?
|
#10667
|
Bug: Tag display & editing
|
Client
|
|
major
|
|
?
|
#10664
|
Bug: non-deterministic behavior in RTypes
|
OmeroCpp
|
rleigh
|
critical
|
|
?
|
#10660
|
BUG: Big images rendering - red square
|
Insight
|
jburel
|
minor
|
|
?
|
#10648
|
Command-line processing via Scripts Example
|
Scripting
|
wmoore
|
major
|
|
?
|
#10605
|
Force debug=True for OMERO.web while in development mode
|
Web
|
web-team@…
|
minor
|
|
?
|
#10601
|
Bug: delete plate acquisition
|
Insight
|
jburel
|
major
|
|
?
|
#10590
|
RFE: Add id-based Principal
|
API
|
|
critical
|
|
?
|
#10584
|
Bug: testStartAsync failing (disabling)
|
General
|
jamoore
|
minor
|
|
?
|
#10565
|
Review server for RawFileStore leakage
|
General
|
jamoore
|
minor
|
|
?
|
#10553
|
RFE: display if user is an admin
|
Insight
|
jburel
|
minor
|
|
?
|
#10552
|
Bug: Can't view large images in Insight, out of memory
|
Insight
|
jburel
|
minor
|
|
?
|
#10541
|
Bug: Insight ROI intensity view excel export defects
|
Insight
|
jburel
|
minor
|
|
?
|
#10540
|
Bug: ROI tool line profile and histogram defects
|
Insight
|
jburel
|
minor
|
|
?
|
#10537
|
omero/client.java should check Ice version
|
Deployment
|
|
major
|
|
?
|
#10534
|
Bug: Jiggling metadata scrollbars
|
Insight
|
jburel
|
minor
|
|
?
|
#10529
|
Bug: Bird eye location at init
|
Web
|
wmoore
|
major
|
|
?
|
#10528
|
Bug: Incorrect header size in ROI propagation dialogue
|
Insight
|
jburel
|
minor
|
|
?
|
#10524
|
RFE: reset import location tab
|
Insight
|
jburel
|
major
|
|
?
|
#10520
|
Bug: path._base == unicode on Python2.7
|
OmeroPy
|
spli
|
major
|
|
?
|
#10504
|
Add support for Aperio XML ROI file
|
Bio-Formats
|
mlinkert
|
minor
|
|
?
|
#10501
|
RFE: async download methods in gateways
|
API
|
|
major
|
|
?
|
#10484
|
Bug: Group display selector hard to awaken
|
Insight
|
jburel
|
minor
|
|
?
|
#10455
|
RFE: poor layout of right pane in web client
|
Web
|
wmoore
|
minor
|
|
?
|
#10454
|
Bug: in web right-click menus can be vertically truncated
|
Web
|
wmoore
|
minor
|
|
?
|
#10452
|
RFE: different CLI help goes to different file descriptors
|
Import
|
jamoore
|
minor
|
|
?
|
#10428
|
Turn down logging verbosity in OMERO.tables
|
Services
|
spli
|
minor
|
|
?
|
#10421
|
Update OMERO.tables backwards_compatibility test
|
API
|
spli
|
critical
|
|
?
|
#10418
|
Consider adding FloatColumn OMERO.tables column type
|
API
|
spli
|
minor
|
|
?
|
#10415
|
Bug: tablestest suite from OmeroPy fails with Python 2.6
|
OmeroPy
|
jamoore
|
major
|
|
?
|
#10414
|
Consider changing file path representation in API
|
OmeroFs
|
jamoore
|
minor
|
|
?
|
#10408
|
Bug: search for Experimenter using byFullText("root") does not return any results
|
Search
|
|
minor
|
|
?
|
#10396
|
Dragging of images in web fails after the mouse pointer leaves the image
|
Web
|
wmoore
|
minor
|
|
?
|
#10368
|
RFE: Use nice terminal bars for CLI upload
|
General
|
|
trivial
|
|
?
|
#10363
|
Bug: Race condition opening images before thumbnail load
|
Insight
|
jburel
|
major
|
|
?
|
#10362
|
OMERO.scripts should call enableKeepAlive() before running a script
|
Scripting
|
spli
|
minor
|
|
1d
|
#10359
|
Bug: getManagedRepo in repository.py is too slow
|
API
|
jamoore
|
critical
|
|
?
|
#10357
|
Color Mapping strategy
|
from QA
|
jburel
|
minor
|
|
?
|
#10352
|
Viewport 'view' & 'model' separation
|
Web
|
wmoore
|
major
|
|
?
|
#10340
|
Add support for VTK files
|
Bio-Formats
|
|
trivial
|
|
?
|
#10332
|
Bug: Insight drag and drop doesn't move images between groups
|
Insight
|
jburel
|
minor
|
|
?
|
#10330
|
Enable deletion of (hanging/zombie) ScriptJobs
|
Scripting
|
|
minor
|
|
?
|
#10328
|
Bug: ROIs drawn Insight shown to be in wrong place by web client image viewer
|
Insight
|
jburel
|
minor
|
|
?
|
#10327
|
Bug: Very easy to lose data permenantly when deleting multiply-linked objects
|
Insight
|
jburel
|
major
|
|
?
|
#10325
|
Introduce ImportSet to API
|
OmeroFs
|
jamoore
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critical
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1.5d
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#10314
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Bug: Insight toolbar inactive in some situations
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Insight
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jburel
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minor
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?
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#10313
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Bug: clash between users semi-disables Insight
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Insight
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jburel
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minor
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?
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#10304
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Bug: Original metadata is unquoted and not safe to parse
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OmeroPy
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critical
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?
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#10293
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RFE: on logout set login params, or have switch user
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Web
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wmoore
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minor
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?
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#10288
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Address literal non-ASCII characters in source code
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General
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minor
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?
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#10276
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Review files older than 2 years
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General
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jamoore
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minor
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?
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#10271
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FindBugsTask cannot be found
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General
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jamoore
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minor
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?
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#4213
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Add support for MetaFluor/OptoFluor data
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Bio-Formats
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minor
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1d
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#4212
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RFE: allow deleting of user scripts
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Services
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minor
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0.25d
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#4190
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Add reader wrapper that provides simpler tile access
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Bio-Formats
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major
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?
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#4185
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Add support for Zeiss FCS files
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Bio-Formats
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major
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|
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#4179
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Add support for Leica Stereo Microscope data
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Bio-Formats
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major
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|
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#4177
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Certain JPEG-2000 files are not read correctly
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Bio-Formats
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major
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?
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#4171
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Overwriting compressed planes doesn't always work
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Bio-Formats
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major
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|
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#4169
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Add support for Micro-CT VOL files
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Bio-Formats
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major
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1.5d
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#4167
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Writers do not support overwriting metadata
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Bio-Formats
|
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major
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|
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#4163
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Make error message windows more friendly
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Bio-Formats
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major
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|
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#4157
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Make it easier to get/set the pixels' compression type
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Bio-Formats
|
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major
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?
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#4155
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Expand (and clean up) use of new 'setWriteSequentially' method
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Bio-Formats
|
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major
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?
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#4154
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Add support for OME-TIFF files produced by Leica Matrix scanner
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Bio-Formats
|
rleigh
|
major
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1d
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#4152
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LSM reader XT linescan opened as XY
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Bio-Formats
|
|
minor
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|
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#4147
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Add support for Varian FID files
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Bio-Formats
|
|
major
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|
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#4133
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OME-XML writer does not support saving tiles
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Bio-Formats
|
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major
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|
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#4132
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JPEG writer does not support saving tiles
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Bio-Formats
|
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major
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|
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#4131
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JPEG-2000 writer does not support saving tiles
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Bio-Formats
|
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major
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|
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#4129
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APNG writer does not support saving tiles
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Bio-Formats
|
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major
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|
?
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#4128
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AVI writer does not support saving tiles
|
Bio-Formats
|
|
major
|
|
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#4126
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Allow user to specify dimensions during stack concatenation
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Bio-Formats
|
|
major
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|
?
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#4125
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Add support for OpenEXR files
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Bio-Formats
|
|
major
|
|
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#4124
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Add support for Matlab matrix files
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Bio-Formats
|
|
major
|
|
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#4120
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Add support for Intervision MV format
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Bio-Formats
|
|
major
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|
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#4115
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Add support for scanning microscopy formats
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Bio-Formats
|
|
minor
|
|
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#4113
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Add support for .nex file format
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Bio-Formats
|
|
major
|
|
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#4111
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Add support for Leica OME data
|
Bio-Formats
|
rleigh
|
major
|
|
2d
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#4108
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Vector .psd files not supported
|
Bio-Formats
|
|
minor
|
|
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#4107
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More robust support for 1, 2 and 4 bit images
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Bio-Formats
|
|
major
|
|
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#4106
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Add support for MPEG-2/.vob files
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Bio-Formats
|
|
minor
|
|
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#4105
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More flexible window naming
|
Bio-Formats
|
crueden-x
|
minor
|
|
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#4103
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Add enumeration for OME-XML versions
|
Bio-Formats
|
|
minor
|
|
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#4102
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Add support for vector data in PS/EPS files
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Bio-Formats
|
|
minor
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|
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#4098
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Add support for datasets produced by Vevo 770
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Bio-Formats
|
mlinkert
|
major
|
|
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#4097
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Add support for Patch-Master electrophysiology files
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Bio-Formats
|
|
major
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|
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#4091
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Add support for compressed LIM files
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Bio-Formats
|
|
minor
|
|
?
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#4090
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Better usage of JAI Image I/O Tools
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Bio-Formats
|
|
minor
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|
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#4089
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FB 863: Allow sending feedback from loci tools
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Bio-Formats
|
|
major
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|
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#4063
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Cache HibernateUtils.getDetails
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Performance
|
|
minor
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?
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#737
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ModelMapper improperly handles timestamps
|
Services
|
jamoore
|
minor
|
|
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#722
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Evaluate all HQL and Criteria queries for distinctness
|
Queries
|
jamoore
|
minor
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|
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#711
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blitz's IQuery.findAllByExample fails after #710 fix
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General
|
jamoore
|
minor
|
|
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#702
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Try Hiberate 3.2.4.ga's order_insert option
|
Performance
|
jamoore
|
minor
|
|
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#669
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Thumbnails won't generate on small images.
|
General
|
cxallan
|
minor
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|
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#635
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Overload operator<< on generated C++ classes if possible.
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Client
|
jamoore
|
minor
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|
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#591
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Impossible to correlate service log output
|
Services
|
jamoore
|
major
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|
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#559
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Improve logging of DB modifications.
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General
|
jamoore
|
trivial
|
|
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#512
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Review hidden password solution.
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Security
|
jamoore
|
minor
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?
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#478
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Move pertinent annotations (@Stateless/@Stateful) to interfaces
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API
|
jamoore
|
minor
|
|
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#468
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Roles should also take into account security annotations
|
Security
|
jamoore
|
trivial
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|
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#447
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Examine time queries from non-Java languages.
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General
|
jamoore
|
minor
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#439
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Put all enumerations in a single table
|
ORM
|
jamoore
|
minor
|
|
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#414
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Document IAdmin-like usage of IUpdate.flush()
|
API
|
jamoore
|
minor
|
|
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#410
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Thumbnail Service Triggering Dirty Session Exception (Document fix)
|
Documentation
|
jamoore
|
major
|
|
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#395
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Implement performance regression tests
|
Performance
|
jamoore
|
minor
|
|
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#383
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Remove all System.out|err references
|
General
|
jamoore
|
trivial
|
|
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#378
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Extend security tests.
|
Security
|
jamoore
|
minor
|
|
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#377
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Refactor `ome.services.query.Hierarchy`
|
Queries
|
jamoore
|
minor
|
|
|
#359
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DSL "required" property type could often be remodelled as one-to-one or many-to-one
|
DSL
|
jamoore
|
minor
|
|
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#349
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Create and use subclasses of SecurityViolation from ACLEventListener
|
Security
|
jamoore
|
minor
|
|
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#347
|
Implement IQuery.refresh(IObject)
|
API
|
jamoore
|
minor
|
|
|
#338
|
Provide overview of which interfaces affect which DB tables
|
General
|
jamoore
|
minor
|
|
|
#335
|
ReadOnly methods still sometimes get a DB entry (Event)
|
ORM
|
jamoore
|
minor
|
|
|
#317
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Upgrade Spring DTD url
|
Configuration
|
jamoore
|
minor
|
|
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#307
|
Hibernate improperly handles Permissions components that are null
|
ORM
|
jamoore
|
major
|
|
|
#292
|
Use generated constant field names in criteria queries
|
Queries
|
jamoore
|
trivial
|
|
|
#262
|
Consider more service component interfaces for handler logic.
|
Security
|
jamoore
|
trivial
|
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