Bio-Formats tickets (151 matches)

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Type: story (5 matches)

Ticket Summary Status Owner Priority Milestone Created Modified Reporter Cc
#11981 Renaming of packages new critical OME-Files 5 years 3 years rleigh
#9651 HDF new major Unscheduled 7 years 3 years mlinkert jamoore
#12181 Bio-Formats API improvements new major Unscheduled 5 years 3 years mlinkert bf@…
#6309 Bio-Formats to provide strict and lax validation new minor Unscheduled 8 years 3 years ajpatterson jamoore, mlinkert
#11764 Codec support new minor Unscheduled 6 years 3 years mlinkert jamoore, jburel

Type: task (146 matches)
Ticket Summary Status Owner Priority Milestone Created Modified Reporter Cc
#12276 Allow inspection of optimal reading order new critical Pyramids 5 years 3 years jamoore dgault
#4089 FB 863: Allow sending feedback from loci tools new major Unscheduled 9 years 3 years omero-qa jamoore, stephane.dallongeville@…, jburel, sbesson
#4097 Add support for Patch-Master electrophysiology files new major Unscheduled 9 years 3 years mlinkert anlkae@…
#4098 Add support for datasets produced by Vevo 770 new mlinkert major Unscheduled 9 years 8 years mlinkert anlkae@…
#4104 Add support for HDF files produced by Huygens new major Unscheduled 9 years 3 years mlinkert glenmac@…, johannes-paul.koch@…, belyaev@…, daniel@…, gitta@…, d.moulding@…, sgoh@…, Ralf.Palmisano@…, nikolaus.ehrenfeuchter@…
#4107 More robust support for 1, 2 and 4 bit images new major Unscheduled 10 years 3 years mlinkert FCORNELI@…
#4111 Add support for Leica OME data new rleigh major Unscheduled 9 years 3 years mlinkert Volker.Hartmann@…, jamoore
#4113 Add support for .nex file format new major Unscheduled 9 years 3 years mlinkert alexandre.dufour@…
#4117 Support for Group 3 Fax TIFF compression new major Unscheduled 10 years 9 months curtis mahogny@…, bf@…
#4120 Add support for Intervision MV format new major Unscheduled 9 years 3 years mlinkert he.johan@…
#4121 Add support for Mirax data new major Unscheduled 8 years 3 years mlinkert ofra.golani@…, h836472@…, nicolas.herve@…, vmeasyed@…, G.Landini@…, myilmaz@…, jonas.ogaard@…, tim.mciver@…, joachim.hehl@…, jch@…, brad.polant@…, fujisaws@…
#4124 Add support for Matlab matrix files new major Unscheduled 9 years 3 years mlinkert delnatan@…
#4125 Add support for OpenEXR files new major Unscheduled 9 years 3 years mlinkert ddye@…, iarganda@…
#4126 Allow user to specify dimensions during stack concatenation accepted major Unscheduled 9 years 3 years mlinkert
#4128 AVI writer does not support saving tiles new major Unscheduled 9 years 3 years mlinkert
#4129 APNG writer does not support saving tiles new major Unscheduled 9 years 3 years mlinkert
#4131 JPEG-2000 writer does not support saving tiles new major Unscheduled 9 years 3 years mlinkert
#4132 JPEG writer does not support saving tiles new major Unscheduled 9 years 3 years mlinkert
#4133 OME-XML writer does not support saving tiles new major Pyramids 9 years 3 years mlinkert mtbcarroll
#4147 Add support for Varian FID files new major Unscheduled 9 years 3 years mlinkert
#4154 Add support for OME-TIFF files produced by Leica Matrix scanner new rleigh major Unscheduled 9 years 3 years mlinkert ruben.munoz@…, jamoore, harri.jaalinoja@…
#4155 Expand (and clean up) use of new 'setWriteSequentially' method accepted major Unscheduled 9 years 3 years mlinkert
#4157 Make it easier to get/set the pixels' compression type accepted major Unscheduled 9 years 3 years mlinkert simon.blanchoud@…
#4159 Add support for DICOM supplement #145 new mlinkert major Unscheduled 8 years 3 years mlinkert hjkarten@…
#4163 Make error message windows more friendly new major Unscheduled 9 years 3 years mlinkert curtis, jburel, bramalingam
#4165 Consider writing decoder for compressed Flex files new major Unscheduled 9 years 3 years mlinkert ajs17@…
#4167 Writers do not support overwriting metadata new major Unscheduled 9 years 3 years mlinkert simon.blanchoud@…
#4169 Add support for Micro-CT VOL files new major Unscheduled 9 years 3 years mlinkert amin.garbout@…, ctrueden-x
#4171 Overwriting compressed planes doesn't always work new major Unscheduled 9 years 3 years mlinkert simon.blanchoud@…
#4177 Certain JPEG-2000 files are not read correctly accepted major Unscheduled 8 years 3 years mlinkert mtemple@…
#4179 Add support for Leica Stereo Microscope data new major Unscheduled 9 years 22 months mlinkert
#4185 Add support for Zeiss FCS files new major Unscheduled 9 years 3 years mlinkert cjw@…
#4190 Add reader wrapper that provides simpler tile access new major Pyramids 9 years 3 years mlinkert jamoore
#5396 Parse ROIs from .vsi files accepted rleigh major ROI 8 years 3 years mlinkert smithd@…
#6229 Bio-Formats JAI ImageIO service examination new major Pyramids 8 years 3 years cxallan
#6721 Investigate improving performance of TIFF export with setWriteSequential(false) new major Unscheduled 8 years 8 months mlinkert a.herbert@…, cxallan, jburel, bf@…
#6824 Add support for .emi files new major Unscheduled 8 years 3 years mlinkert ofra.golani@…
#7092 Improve metadata support for Cellomics datasets new mlinkert major Unscheduled 8 years 3 years mlinkert harri.jaalinoja@…, ruderman@…
#8336 Add support for Zeiss Orion data new major Unscheduled 7 years 3 years mlinkert G.Hlawacek@…
#8428 Add support for DV-DIF files new major Unscheduled 7 years 3 years mlinkert christian.dietz@…
#8792 Add support for .ser files new major Unscheduled 7 years 3 years mlinkert ofra.golani@…
#9544 Bug: very large .jp2 files do not import correctly new mlinkert major Unscheduled 7 years 2 years mlinkert
#9652 Improve performance of HDF-based readers new major Unscheduled 7 years 3 years mlinkert jamoore
#9901 Refactor PyramidTiffReader out of MinimalTiffReader new major Pyramids 7 years 3 years jamoore cxallan
#10903 Add support for Ariol data new major Unscheduled 6 years 3 years mlinkert rleigh, andreas.heindl@…
#11303 Add support for P250 Pannoramic MRXS data new major Unscheduled 6 years 3 years mlinkert ome@…
#11379 Add support for PerkinElmer Living Image data new mlinkert major Unscheduled 6 years 2 years mlinkert nicki.jennings@…
#11568 Add support for FreeSurfer MGH files new major Unscheduled 6 years 3 years mlinkert
#11612 Make codecs discoverable new major Unscheduled 6 years 3 years mlinkert jamoore
#11860 Bug: FormatTools support for complex numbers new major GatherReqs 6 years 3 years rleigh ian.dobbie@…
#11861 Bug: DeltaVision reader does not support complex pixel formats new major GatherReqs 6 years 3 years rleigh ian.dobbie@…
#12057 Add support for FEI .ser data new major Unscheduled 5 years 7 months mlinkert percius@…, bf@…
#12245 Add support for Incucyte data new major Unscheduled 5 years 3 years mlinkert wmoore, L.Bailey@…
#12257 netCDF cannot open certain large .ims files new major Unscheduled 5 years 3 years mlinkert l.maier@…
#12483 Add support for MetaSystems .vsi data new major Unscheduled 5 years 3 years mlinkert filipe.devadder@…
#12584 Add support for .oct files new major Unscheduled 5 years 3 years mlinkert sauer.benjamin@…
#12730 Add support for Tissuegnostics data new major Unscheduled 4 years 3 years omero-qa dshumake@…
#12731 Update L2DReader to support Li-Cor Odyssey data new major Unscheduled 4 years 3 years omero-qa dshumake@…
#12836 Read lookup tables from Imspector .msr files new major Unscheduled 4 years 2 years mlinkert sethur2@…, imunro-x
#12841 Bug: Imspector channels detected incorrectly new major Unscheduled 4 years 2 years mlinkert sethur2@…, imunro-x
#13015 Add support for EasyRatioPro format new major Unscheduled 4 years 3 years sbesson nickolai.vysokov@…
#13120 Add support for RayScan .rec data new dgault major Unscheduled 4 years 4 years dgault giedrius.zirgulis@…
#13136 Add support for Berthold Nightshade data new major Unscheduled 4 years 3 years mlinkert rmunoz@…
#13253 Add support for new Leica LOF format new major Unscheduled 3 years 19 months bramalingam kzentis@…
#13270 Bug: images not matching with well placement new dgault major Unscheduled 3 years 16 months mtbcarroll bf@…
#4090 Better usage of JAI Image I/O Tools new minor Unscheduled 12 years 3 years curtis
#4091 Add support for compressed LIM files new minor Unscheduled 9 years 3 years mlinkert
#4100 Handle mixed OME/non-OME XML blocks new minor Unscheduled 11 years 3 years curtis jamoore, sbesson, mtbcarroll, rleigh
#4102 Add support for vector data in PS/EPS files new minor Unscheduled 9 years 3 years mlinkert
#4103 Add enumeration for OME-XML versions new minor Unscheduled 10 years 3 years mlinkert cxallan, jamoore, dgault, rleigh, mtbcarroll, sbesson
#4105 More flexible window naming new crueden-x minor Unscheduled 9 years 9 years crueden-x jalexand@…
#4106 Add support for MPEG-2/.vob files new minor Unscheduled 11 years 3 years mlinkert
#4108 Vector .psd files not supported new minor Unscheduled 9 years 3 years mlinkert
#4115 Add support for scanning microscopy formats new minor Unscheduled 9 years 3 years mlinkert cervetti.christian@…
#4152 LSM reader XT linescan opened as XY new minor Unscheduled 9 years 3 years curtis white@…
#4213 Add support for MetaFluor/OptoFluor data new minor Unscheduled 9 years 3 years mlinkert
#4644 B-F JPEG2000 Progression Type new jburel minor Unscheduled 8 years 8 years jburel cxallan
#5873 openThumb* should return the stored thumbnail for FV1000 files new minor Unscheduled 8 years 3 years mlinkert
#6413 Fix support for RGB Volocity clipping files new minor Unscheduled 8 years 3 years mlinkert maringa@…
#7701 Add support for Bruker Optics data new minor Unscheduled 8 years 3 years mlinkert cjhirschmugl@…
#7781 Support for Group 4 fax compression new minor Unscheduled 8 years 3 years mlinkert stephane.dallongeville@…
#8126 RFE: Allow writing of AVI 2.0 files new minor Unscheduled 7 years 3 years mlinkert
#8215 Set up some way of mapping plane indices to file names new minor Unscheduled 7 years 3 years mlinkert briney@…, crueden-x, jamoore
#8875 Add some missing Metamorph screen metadata new mlinkert minor Unscheduled 7 years 3 years mlinkert
#9037 Add support for QuickTime H.264 new minor Unscheduled 7 years 3 years mlinkert christian.dietz@…
#9228 Investigate performance of TIFF-based readers new mlinkert minor OME-Files 7 years 3 years mlinkert crueden-x, johannes.schindelin@…, jerome.mutterer@…, ppirrotte@…
#9336 Some DICOM files do not read all planes new mlinkert minor Unscheduled 7 years 3 years crueden-x nkoenig@…
#9516 RFE: add support for SICM data new minor Unscheduled 7 years 3 years mlinkert a.shevchuk@…
#9910 Turn remaining uses of ReflectedUniverse into services new minor Unscheduled 7 years 3 years mlinkert cxallan
#9932 Add support for OASIS slide datasets new minor Unscheduled 7 years 3 years mlinkert
#10025 Add support for MetaIO files new minor Unscheduled 7 years 3 years mlinkert
#10504 Add support for Aperio XML ROI file new mlinkert minor ROI 6 years 2 years mlinkert rleigh
#10612 Export: prevent overwriting of existing files new minor Unscheduled 6 years 3 years mlinkert jamoore
#11318 EMBL-Heidelberg Format new minor Unscheduled 6 years 3 years ajpatterson
#11347 Bug: Extend timestamp precision to nanoseconds new rleigh minor Unscheduled 6 years 6 years rleigh
#11560 Bug: Incorrect pixel offsets for some .spl files new minor Unscheduled 6 years 3 years omero-qa ben.whitey@…
#11666 Add support for EVOS data new minor Unscheduled 6 years 3 years mlinkert crueden-x
#11831 Attempt to improve metadata exported from ImageJ new minor Unscheduled 6 years 3 years mlinkert hadrien.mary@…, bramalingam, jburel
#11862 Bug: OME-TIFF support for reading and writing complex pixel types new minor GatherReqs 6 years 3 years rleigh ian.dobbie@…
#11967 RFE: ImageJ plugin interface does not expose reader-specific export options new minor Unscheduled 6 years 8 months rleigh david.knecht@…
#12059 C++ Image rescaling/resampling new rleigh minor Unscheduled 5 years 3 years rleigh
#12081 Bug: C++ PixelBuffer needs a companion proxy pixel buffer accepted rleigh minor Unscheduled 5 years 3 years rleigh
#12118 Bug: Unused parameters in MetadataStore setters new rleigh minor Unscheduled 5 years 3 years rleigh mlinkert, ajpatterson
#12237 Bug: LIFReader: Original metadata regression from 4.4 new jburel minor Unscheduled 5 years 20 months rleigh pierre.pouchin@…
#12385 Unnecessary thread safety from Vector? new mtbcarroll minor Unscheduled 5 years 3 years mtbcarroll bf@…
#12599 Bug: OMERO clients report BIT pixel type as uint8 new minor GatherReqs 5 years 3 years rleigh
#12678 Allow bfconvert file patterns to use configurable number of digits new minor Unscheduled 5 years 3 years mlinkert lifangfei@…
#12740 Bug: Miscellaneous OMETiffReader defects new minor OME-Files 4 years 3 years rleigh jburel
#12897 RFE: parse metadata from U. Fribourg 2-photon data new minor Unscheduled 4 years 3 years omero-qa
#12898 Extend Bio-Formats Macro Extensions to extract Channel name,etc. new minor Unscheduled 4 years 3 years bramalingam D.N.Mason@…
#12907 Bug: C++ cmake option consistency new rleigh minor Unscheduled 4 years 3 years rleigh
#12938 Text image file support new minor Unscheduled 4 years 3 years omero-qa pognonec@…
#13004 RFE : Optimise performance for reading tiles in big Images new minor Pyramids 4 years 3 years bramalingam kuhlmam@…, dgault
#13064 RFE: New Reader for Picoquant HydraHarp (.pt3) new minor Unscheduled 4 years 3 years bramalingam i.munro@…, dirk.haehnel@…
#13098 BUG: JPEG Reader (Could not determine subsample type) new minor Unscheduled 4 years 3 years bramalingam a.ostrowski@…
#13106 TiffReader: Does not handle YCbCr conversion new minor Unscheduled 4 years 3 years rleigh stephane.dallongeville@…
#13123 Andor/FluoviewReader - Incorrect unit conversion new dgault minor Unscheduled 4 years 3 years dgault J.Wainwright@…
#13144 Bug: Minimal Tiff Reader - Index out of bounds exception new minor Unscheduled 4 years 12 months dgault m.porter@…
#13168 BUG: Bioformats Exporter not opening Mac OSX Java 8 new minor Unscheduled 3 years 8 months bramalingam
#13170 CellSensReader - Image banding and bad pixel data new dgault minor Unscheduled 3 years 3 years dgault nantho2@…
#13174 APLReader - parsing of mtb file new dgault minor Unscheduled 3 years 3 years dgault
#13178 BUG: Unsupported Compression Type 1145656920 for AVIReader new minor Unscheduled 3 years 3 years bramalingam geyen@…
#13188 Bug: Additional tiling defects new minor Pyramids 3 years 3 years rleigh
#13203 ZeissCZIReader - Unknown IlluminationType new dgault minor Unscheduled 3 years 3 years dgault
#13204 BUG: ND2 files with wrong series and time points new minor Unscheduled 3 years 12 months bramalingam c.probst@…
#13222 ImageJ Plugin - Image crop not working with Virtual stack new dgault minor Unscheduled 3 years 3 years dgault
#13236 Bug: stack trace in converting to PNG new dgault minor Unscheduled 3 years 3 years mtbcarroll bf@…
#13244 ImspectorPro files only open a single frame new dgault minor Unscheduled 3 years 3 years dgault
#13259 OMERO.insight-ij plugin - charToByteConverterClass warning new dgault minor Unscheduled 3 years 3 years dgault
#13262 RFE: nd2 files with strange characters in metadata new dgault minor 3 years 3 years mtbcarroll bf@…
#13265 ValidationException when inserting Pixels object new dgault minor Unscheduled 3 years 3 years dgault
#13271 Olympus ScanR fails to import new dgault minor Unscheduled 3 years 3 years dgault
#13274 RFE: Unsupported Fortmat (.ovl) new minor Unscheduled 3 years 8 months bramalingam Roselle.Gelinas@…
#13287 BUG: CellSensReader (Image dimensions) new minor Unscheduled 3 years 17 months bramalingam prabathy2k@…, m.vis@…
#13289 RFE: review tiffcomment upgrade check warning new dgault minor 3 years 3 years mtbcarroll bf@…
#13296 BUG: Bio-Formats Exporter issues while splitting Z,T new dgault minor Unscheduled 3 years 3 years bramalingam kai.schleicher@…, nikolaus.ehrenfeuchter@…
#13300 RFE: Support for New Format (MSD) new minor Unscheduled 3 years 3 years bramalingam v.boersma@…
#13306 RFE: Populate slice labels of ImagePlus Object new minor Unscheduled 3 years 8 months bramalingam michael.ellis@…
#13322 Bug: ND2 Bfconvert issues new minor Unscheduled 2 years 2 years bramalingam
#4082 Support for QuickTime Sorenson 3 codec new trivial Unscheduled 12 years 3 years curtis
#4092 AVI codecs supported by NIS Elements new trivial Unscheduled 12 years 3 years mlinkert
#4148 Native support for Quicktime Sorenson 1 codec (SVQ1) new trivial Unscheduled 9 years 3 years mlinkert jspr74@…
#6311 Add tooltips to the OME-XML window in ImageJ new trivial Unscheduled 8 years 3 years mlinkert
#6375 Add basic support for PDF files new trivial Unscheduled 8 years 3 years mlinkert venu_kesi@…
#10340 Add support for VTK files new trivial Unscheduled 7 years 3 years mlinkert rleigh
#11765 Add LZ4 service new trivial Unscheduled 6 years 3 years mlinkert jamoore
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