Task #10113 (closed)
Opened 7 years ago
Closed 7 years ago
Bug: AVi Import
| Reported by: | jburel | Owned by: | jburel |
|---|---|---|---|
| Priority: | blocker | Milestone: | OMERO-4.4.7 |
| Component: | Import | Version: | n.a. |
| Keywords: | FS | Cc: | fs@…, ux@…, |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description (last modified by jburel)
The 3 images from test_image_good/avi folder imported correctly
Thumbnails are generated at import but not correct in data manager (see #10112)
The major problem here:
- 3 images created.
- Open the image, they all displayed the same image
- It could be that link to original file is not correct. Most likely
- Buffer not correctly reset.
Attachments (4)
Change History (14)
comment:1 Changed 7 years ago by jburel
- Cc mlinkert-x added
- Description modified (diff)
comment:2 Changed 7 years ago by jburel
- Description modified (diff)
comment:3 Changed 7 years ago by pwalczysko
Changed 7 years ago by pwalczysko
Changed 7 years ago by pwalczysko
comment:4 Changed 7 years ago by pwalczysko
The same problem with thumbnails noticed with test_images_good/oxford-instruments/80619a.top. The thumbnail is displayed wrongly, although the image is displayed okay (compared with howe). See screenshots.
Changed 7 years ago by pwalczysko
Changed 7 years ago by pwalczysko
comment:5 Changed 7 years ago by pwalczysko
- Cc fs@… added; jmoore cblackburn mlinkert-x removed
comment:6 Changed 7 years ago by pwalczysko
Tried to repeat the import of the one-xml images. Build OMERO.insight-4.4.4-772-1108a15-dirty-ice33-b112-mac. The images which imported successfully were displayed correctly. Nevertheless, got three import failures.
All the same errors. The images were
Sample-2003-CA.ome
sdub-nopix.ome
tubhiswt-CA.ome
tubhiswt.ome (I know that one is invalid, but the error was different this time)
java.lang.IndexOutOfBoundsException: Index: 0, Size: 0 at java.util.ArrayList.RangeCheck(ArrayList.java:547) at java.util.ArrayList.get(ArrayList.java:322) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1251) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680)
comment:7 Changed 7 years ago by jburel
- Owner set to jburel
comment:8 Changed 7 years ago by mlinkert
Sample-2003-CA.ome, sdub-nopix.ome, and tubhiswt-CA.ome are also expected not to import, as none of them contain pixel data.
comment:9 Changed 7 years ago by jburel
avi works fine now
comment:10 Changed 7 years ago by jburel
- Resolution set to fixed
- Status changed from new to closed
avi and oxfords work fine. The ome file are not valid.
Closing.
Experiencing the same problem with /test_images_good/ome-xml/samples/Antarctic_Diatom_D3D_01.ome and other .ome in this folder (see screenshot). The thumbnails are originally black, but not all of them, then after opening of the image in full viewer the viewer image and the thumbnail do not correspond - also for some images after closure of the full viewer the thumbnail display changes.
The same problem with plate (imported as plate) on test_images_good/ome-xml/testImportPlate/testImportPlateMultiplePlateAcquisitions1508.ome. See screenshot.