Task #10121 (closed)
BUG:MIAS import failure
Reported by: | ajpatterson | Owned by: | |
---|---|---|---|
Priority: | critical | Milestone: | OMERO-4.4.7 |
Component: | Import | Version: | n.a. |
Keywords: | n.a. | Cc: | fs@…, ux@…, |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
Import of file failed after about 13 mins.
mias/frans/MIAS 3 D set 2 july 13 2009/
It did create an empty screen in insight.
java.lang.RuntimeException: Failure response on import! Category: ::omero::grid::ImportRequest Name: import-request-failure Parameters: {message=ImageReader.getSeriesCount: Current file should not be null; call setId(String) first, stacktrace=java.lang.IllegalStateException: ImageReader.getSeriesCount: Current file should not be null; call setId(String) first at loci.formats.FormatTools.assertId(FormatTools.java:713) at loci.formats.ImageReader.getReader(ImageReader.java:202) at loci.formats.ImageReader.getSeriesCount(ImageReader.java:433) at loci.formats.ReaderWrapper.getSeriesCount(ReaderWrapper.java:338) at loci.formats.ReaderWrapper.getSeriesCount(ReaderWrapper.java:338) at loci.formats.ReaderWrapper.getSeriesCount(ReaderWrapper.java:338) at ome.services.blitz.repo.ManagedImportRequestI.pixelData(ManagedImportRequestI.java:374) at ome.services.blitz.repo.ManagedImportRequestI.step(ManagedImportRequestI.java:265) at omero.cmd.HandleI.steps(HandleI.java:435) at omero.cmd.HandleI$1.doWork(HandleI.java:365) at omero.cmd.HandleI$1.doWork(HandleI.java:363) at sun.reflect.GeneratedMethodAccessor245.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:592) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:518) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:154) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy65.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:416) at omero.cmd.HandleI.run(HandleI.java:359) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:417) at ome.services.util.Executor$Impl$1.call(Executor.java:447) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:269) at java.util.concurrent.FutureTask.run(FutureTask.java:123) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:651) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:676) at java.lang.Thread.run(Thread.java:595) } at ome.formats.importer.ImportLibrary.getImportResponse(ImportLibrary.java:437) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:397) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6537) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6520) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:201) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1327) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6584) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6520) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:201) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1327) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) Caused by: java.lang.RuntimeException: Failure response on import! Category: ::omero::grid::ImportRequest Name: import-request-failure Parameters: {message=ImageReader.getSeriesCount: Current file should not be null; call setId(String) first, stacktrace=java.lang.IllegalStateException: ImageReader.getSeriesCount: Current file should not be null; call setId(String) first at loci.formats.FormatTools.assertId(FormatTools.java:713) at loci.formats.ImageReader.getReader(ImageReader.java:202) at loci.formats.ImageReader.getSeriesCount(ImageReader.java:433) at loci.formats.ReaderWrapper.getSeriesCount(ReaderWrapper.java:338) at loci.formats.ReaderWrapper.getSeriesCount(ReaderWrapper.java:338) at loci.formats.ReaderWrapper.getSeriesCount(ReaderWrapper.java:338) at ome.services.blitz.repo.ManagedImportRequestI.pixelData(ManagedImportRequestI.java:374) at ome.services.blitz.repo.ManagedImportRequestI.step(ManagedImportRequestI.java:265) at omero.cmd.HandleI.steps(HandleI.java:435) at omero.cmd.HandleI$1.doWork(HandleI.java:365) at omero.cmd.HandleI$1.doWork(HandleI.java:363) at sun.reflect.GeneratedMethodAccessor245.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:592) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:518) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:154) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy65.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:416) at omero.cmd.HandleI.run(HandleI.java:359) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:417) at ome.services.util.Executor$Impl$1.call(Executor.java:447) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:269) at java.util.concurrent.FutureTask.run(FutureTask.java:123) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:651) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:676) at java.lang.Thread.run(Thread.java:595) } at ome.formats.importer.ImportLibrary.getImportResponse(ImportLibrary.java:437) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:397) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6537) ... 13 more
Change History (2)
comment:1 Changed 11 years ago by pwalczysko
- Resolution set to fixed
- Status changed from new to closed
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Closing, duplicate, see #10170