User Story #10230 (closed)
Opened 11 years ago
Closed 11 years ago
Create WND-CHRM demo with existing OMERO codebase
Reported by: | spli | Owned by: | spli |
---|---|---|---|
Priority: | major | Milestone: | OMERO-4.4.7 |
Component: | Scripting | Keywords: | n.a. |
Cc: | analysis@… | Story Points: | n.a. |
Sprint: | 2013-03-12 (6)) | Importance: | n.a. |
Total Remaining Time: | 0.0d | Estimated Remaining Time: | n.a. |
Description (last modified by spli)
A feasibility study: can WND-CHRM be added to OMERO with minimal server-side changes? It won't be pretty, but attempting this should highlight areas which are problematic, and means we're not purely working with hypothetical requirements.
Rough outline:
- Store features in OMERO.tables array columns
- Label training images using annotations in the database, or screen-style bulk-annotations
- One script to calculate features from images in a dataset
- One training script to create a classifier
- One prediction script to run the classifier
Updated: It roughly works, so the plan is to demo this at the PI meeting 28 February-01 March 2013 after the referenced tasks are done.
Attachments (9)
Change History (12)
comment:1 Changed 11 years ago by spli
- Description modified (diff)
- Status changed from new to accepted
- Summary changed from Attempt to use WND-CHRM with existing OMERO codebase to Create WND-CHRM demo with existing OMERO codebase
comment:2 Changed 11 years ago by jburel
- Sprint changed from 2013-02-12 (5) to 2013-03-12 (6))
Changed 11 years ago by spli
Changed 11 years ago by spli
Changed 11 years ago by spli
Changed 11 years ago by spli
Changed 11 years ago by spli
Changed 11 years ago by spli
Changed 11 years ago by spli
Changed 11 years ago by spli
Changed 11 years ago by spli
comment:3 Changed 11 years ago by spli
- Resolution set to fixed
- Status changed from accepted to closed
https://github.com/manics/omero-pychrm/tree/20130228-pi_dev_demo
Screenshots attached.
Moved from sprint 2013-02-12 (5)