Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #10257 (new)

Opened 7 years ago

Last modified 4 years ago

Bug: insight looks for icy in client dir

Reported by: jamoore Owned by: jburel
Priority: minor Milestone: Unscheduled
Component: Insight Version: 4.4.9
Keywords: TAB Cc: adk502@…, ux@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

See: https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=4095

On the plus side I have managed to get Icy ( Icy: an open bioimage informatics platform for extended reproducible research Nature Methods 9, 690 (2012). doi:10.1038/nmeth.2075, http://icy.bioimageanalysis.org) working both with exported ome.tif files and directly from the insight client using the open with command. If anyone else wants to get the open with integration to work the issue that was tripping me up before was that OMERO appears to be trying to open Icy (or at least the .jar) from the same folder as the client files are stored in rather than the one selected as containing the Icy.exe file. This is simply solved by copying all the contents of the Icy folder to the top level of the OMERO client folder. A nice side benifet of this has been that Icy has a fast high quality renderer for confocal z stacks, seems much better than some of the commercial options I've used.

Change History (3)

comment:1 Changed 7 years ago by jmoore

  • Cc adk502@… added

CC'ing Andrew King as requested.

comment:2 Changed 6 years ago by jamoore

  • Cc ux@… added
  • Keywords TAB added
  • Version set to 4.4.9

comment:3 Changed 4 years ago by jamoore

  • Milestone changed from 5.x to Unscheduled
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.93169 sec.)

We're Hiring!