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Task #10257 (new)

Opened 11 years ago

Last modified 8 years ago

Bug: insight looks for icy in client dir

Reported by: jamoore Owned by: jburel
Priority: minor Milestone: Unscheduled
Component: Insight Version: 4.4.9
Keywords: TAB Cc: adk502@…, ux@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.


See: https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=4095

On the plus side I have managed to get Icy ( Icy: an open bioimage informatics platform for extended reproducible research Nature Methods 9, 690 (2012). doi:10.1038/nmeth.2075, http://icy.bioimageanalysis.org) working both with exported ome.tif files and directly from the insight client using the open with command. If anyone else wants to get the open with integration to work the issue that was tripping me up before was that OMERO appears to be trying to open Icy (or at least the .jar) from the same folder as the client files are stored in rather than the one selected as containing the Icy.exe file. This is simply solved by copying all the contents of the Icy folder to the top level of the OMERO client folder. A nice side benifet of this has been that Icy has a fast high quality renderer for confocal z stacks, seems much better than some of the commercial options I've used.

Change History (3)

comment:1 Changed 11 years ago by jmoore

  • Cc adk502@… added

CC'ing Andrew King as requested.

comment:2 Changed 10 years ago by jamoore

  • Cc ux@… added
  • Keywords TAB added
  • Version set to 4.4.9

comment:3 Changed 8 years ago by jamoore

  • Milestone changed from 5.x to Unscheduled
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