XML modulo annotation creation LaVision

[jburel]

Code from frontEnd/helper functions/load_flim_file

`

if strcmp(fname(end-3:end),'.ome')

info = imfinfo(file);

n_im = length(info);
sz = [n_im info(1).Height info(1).Width];
im_data = zeros(sz);

% get binSpacing from file header
tT = Tiff(file);
s = tT.getTag('ImageDescription?');
pos = strfind(s,'PhysicalSizeZ');
binSpacing = 1000 .* str2double(s(pos+15:pos+20)); %binSpacing in ps

delays = (0:(n_im - 1)) .* binSpacing;

for i=1:n_im

im_data(i,:,:) = imread(file,'Index',i,'Info',info);

end

`

The ' delays' array here would go into Labels in your Modulo Annotation with units= ps.

You need to be careful with units though.
We assume ns for the units (& then multtiply by 1000 to covert to ps for our use when we calculate binSpacing) but the units are in the xml as well, in the customAttributes that you sent
under FirstAxis?-Unit="ns".

Probably best to calculate the labels in ns & retain the units .

[jamoore]

Referencing ticket #7855 has changed sprint.

[jamoore]

Referencing ticket #7855 has changed sprint.