Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #10413 (closed)

Opened 11 years ago

Closed 11 years ago

Bug: Download original image

Reported by: jburel Owned by: jburel
Priority: blocker Milestone: 5.0.0-beta1
Component: OmeroFs Version: n.a.
Keywords: n.a. Cc: fs@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: FS Demo 2

Description

  • Import an image
  • Try to download it using the RawFileStore,
  • the path in RawFileStore set using the setFileId(long) is set to OMERO/ManagedRepo/OMERO/ManagedRepo/PathToTheImage

Change History (5)

comment:1 Changed 11 years ago by mtbcarroll

  • Resolution set to fixed
  • Status changed from new to closed

Fixed by ​https://github.com/openmicroscopy/openmicroscopy/pull/762

comment:2 Changed 11 years ago by pwalczysko

  • Resolution fixed deleted
  • Status changed from closed to reopened

Build OMERO.insight-4.4.4-1430-f6a19c9-dirty-ice33-b175-mac.
User-3. Imported trestle/CMU-1. Download of it failed.

Tried to download .lei. Download failed as well. 

java.lang.Exception: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot retrieve original file
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveArchivedFiles(OMEROGateway.java:3935)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getArchivedFiles(OMEROGateway.java:3895)
	at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.getArchivedImage(OmeroDataServiceImpl.java:505)
	at org.openmicroscopy.shoola.env.data.views.calls.ArchivedImageLoader$1.doCall(ArchivedImageLoader.java:75)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Null parameters not allowed: imageIds
                        	at ome.services.query.StringQuery.buildQuery(StringQuery.java:92)
                        	at ome.services.query.Query.doInHibernate(Query.java:222)
                        	at org.springframework.orm.hibernate3.HibernateTemplate.doExecute(HibernateTemplate.java:406)
                        	at org.springframework.orm.hibernate3.HibernateTemplate.execute(HibernateTemplate.java:339)
                        	at ome.logic.QueryImpl.execute(QueryImpl.java:144)
                        	at ome.logic.QueryImpl.findAllByQuery(QueryImpl.java:394)
                        	at sun.reflect.GeneratedMethodAccessor1777.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:592)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy79.findAllByQuery(Unknown Source)
                        	at sun.reflect.GeneratedMethodAccessor1777.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:592)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy79.findAllByQuery(Unknown Source)
                        	at sun.reflect.GeneratedMethodAccessor1831.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:592)
                        	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
                        	at ome.services.throttling.Callback.run(Callback.java:56)
                        	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
                        	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150)
                        	at ome.services.blitz.impl.QueryI.findAllByQuery_async(QueryI.java:66)
                        	at sun.reflect.GeneratedMethodAccessor1830.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:592)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at omero.cmd.CallContext.invoke(CallContext.java:59)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy80.findAllByQuery_async(Unknown Source)
                        	at omero.api._IQueryTie.findAllByQuery_async(_IQueryTie.java:92)
                        	at omero.api._IQueryDisp.___findAllByQuery(_IQueryDisp.java:366)
                        	at omero.api._IQueryDisp.__dispatch(_IQueryDisp.java:496)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Null parameters not allowed: imageIds"
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._IQueryDelM.findAllByQuery(_IQueryDelM.java:266)
	at omero.api.IQueryPrxHelper.findAllByQuery(IQueryPrxHelper.java:320)
	at omero.api.IQueryPrxHelper.findAllByQuery(IQueryPrxHelper.java:292)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveArchivedFiles(OMEROGateway.java:3932)
	... 10 more

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:189)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:287)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:257)
	at org.openmicroscopy.shoola.env.ui.ActivityComponent.showException(ActivityComponent.java:415)
	at org.openmicroscopy.shoola.env.ui.ActivityComponent.actionPerformed(ActivityComponent.java:928)
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
	at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
	at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
	at java.awt.Component.processMouseEvent(Component.java:6382)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
	at java.awt.Component.processEvent(Component.java:6147)
	at java.awt.Container.processEvent(Container.java:2083)
	at java.awt.Component.dispatchEventImpl(Component.java:4744)
	at java.awt.Container.dispatchEventImpl(Container.java:2141)
	at java.awt.Component.dispatchEvent(Component.java:4572)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
	at java.awt.Container.dispatchEventImpl(Container.java:2127)
	at java.awt.Window.dispatchEventImpl(Window.java:2489)
	at java.awt.Component.dispatchEvent(Component.java:4572)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:704)
	at java.awt.EventQueue.access$400(EventQueue.java:82)
	at java.awt.EventQueue$2.run(EventQueue.java:663)
	at java.awt.EventQueue$2.run(EventQueue.java:661)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
	at java.awt.EventQueue$3.run(EventQueue.java:677)
	at java.awt.EventQueue$3.run(EventQueue.java:675)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:674)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

comment:3 Changed 11 years ago by mtbcarroll

  • Component changed from General to OmeroFs
  • Owner changed from mtbcarroll to jburel
  • Status changed from reopened to accepted

This doesn't look like the duplicate path root issue any more.

comment:4 Changed 11 years ago by jburel

Looks like a problem I introduced while refactoring query for delete.

comment:5 Changed 11 years ago by jburel

  • Resolution set to fixed
  • Status changed from accepted to closed

Fix see a34e239 on ​https://github.com/openmicroscopy/openmicroscopy/pull/789 where the bug was introduced

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.65263 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!