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Task #10504 (new)

Opened 7 years ago

Last modified 3 years ago

Add support for Aperio XML ROI file

Reported by: mlinkert Owned by: mlinkert
Priority: minor Milestone: ROI
Component: Bio-Formats Version: 5.0.0
Keywords: n.a. Cc: rleigh
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Aperio .svs files sometimes have an associated XML file that contains ROI data. It would be nice to detect this file and parse the ROIs into OME-XML.

See https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=3546 and the files in svs/paul/.

Change History (4)

comment:1 Changed 7 years ago by mlinkert

  • Owner mlinkert-x deleted

comment:2 Changed 6 years ago by mlinkert

  • Owner set to mlinkert
  • Version set to 5.0.0

comment:3 Changed 4 years ago by jamoore

  • Milestone changed from Unscheduled to ROI

comment:4 Changed 3 years ago by sbesson

See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2017-February/006370.html for a related thread including a MATLAB function used to generate these XML files and could act as the beginning of a specification.

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