Task #10504 (new)
Opened 6 years ago
Last modified 2 years ago
Add support for Aperio XML ROI file
| Reported by: | mlinkert | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | ROI |
| Component: | Bio-Formats | Version: | 5.0.0 |
| Keywords: | n.a. | Cc: | rleigh |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Aperio .svs files sometimes have an associated XML file that contains ROI data. It would be nice to detect this file and parse the ROIs into OME-XML.
See https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=3546 and the files in svs/paul/.
Change History (4)
comment:1 Changed 6 years ago by mlinkert
- Owner mlinkert-x deleted
comment:2 Changed 5 years ago by mlinkert
- Owner set to mlinkert
- Version set to 5.0.0
comment:3 Changed 3 years ago by jamoore
- Milestone changed from Unscheduled to ROI
comment:4 Changed 2 years ago by sbesson
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See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2017-February/006370.html for a related thread including a MATLAB function used to generate these XML files and could act as the beginning of a specification.