Task #10525 (closed)
Opened 11 years ago
Closed 11 years ago
BUG:Feedback 4965
Reported by: | omero-qa | Owned by: | mlinkert |
---|---|---|---|
Priority: | minor | Milestone: | Unscheduled |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | n.a. | Cc: | rebecca.billig@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
http://qa.openmicroscopy.org.uk/qa/feedback/4965/
Exception while trying to read pixel data. Reproducible on dev_4_4 including with your bug-week branch merged in. Please could you copy /ome/apache_repo/4965/2012_10_31_GFPbiflinmKate_29hpf_20x_1.2_7_001.tif and
/ome/apache_repo/4966/2012_10_31_GFPbiflinmKate_29hpf_40x_4.6z_001.tif to from_skyking? From showinf:
Reading pixel data (0-0) Exception in thread "main" loci.formats.FormatException: java.io.EOFException: Attempting to read beyond end of file. at loci.formats.codec.BaseCodec.decompress(BaseCodec.java:188) at loci.formats.tiff.TiffCompression.decompress(TiffCompression.java:278) at loci.formats.tiff.TiffParser.getTile(TiffParser.java:699) at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:916) at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:739) at loci.formats.in.MinimalTiffReader.openBytes(MinimalTiffReader.java:292) at loci.formats.DelegateReader.openBytes(DelegateReader.java:211) at loci.formats.ImageReader.openBytes(ImageReader.java:414) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:317) at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273) at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:265) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:305) at loci.formats.tools.ImageInfo.readPixels(ImageInfo.java:782) at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:1000) at loci.formats.tools.ImageInfo.main(ImageInfo.java:1031) Caused by: java.io.EOFException: Attempting to read beyond end of file. at loci.common.ByteArrayHandle.readByte(ByteArrayHandle.java:204) at loci.common.RandomAccessInputStream.readByte(RandomAccessInputStream.java:353) at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:470) at loci.formats.codec.LZWCodec.decompress(LZWCodec.java:320) at loci.formats.codec.BaseCodec.decompress(BaseCodec.java:183) ... 14 more
Change History (2)
comment:1 Changed 11 years ago by rleigh
- Component changed from from QA to Bio-Formats
- Owner changed from mlinkert-x to mlinkert
comment:2 Changed 11 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
Fixed with: https://github.com/openmicroscopy/bioformats/pull/419
Note that a new build with this fix is not yet available.