Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #10648 (new)

Opened 8 years ago

Last modified 5 years ago

Command-line processing via Scripts Example

Reported by: wmoore Owned by: wmoore
Priority: major Milestone: Unscheduled
Component: Scripting Version: n.a.
Keywords: n.a. Cc: rleigh
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.


Need to provide an up-to-date example of processing via command line called from Scripting service". We could use ImageJ as an example, since we know this is useful.


Ideally this would take a Tiff stack (or a single Tiff) and generate a processed Tiff stack (or single Tiff).

Most of what we need is in this example (we write a macro and pass it to ImageJ along with a tiff stack), except that it is in the web framework and it only generates a jpeg output (not suitable to upload back to OMERO as a new image).

First task is to identify a suitable macro / process to call on the command line from ImageJ, otherwise I'll just go with the example we have and upload jpegs as new images.

Change History (1)

comment:1 Changed 5 years ago by jamoore

  • Milestone changed from 5.x to Unscheduled
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.78300 sec.)

We're Hiring!