Task #10696 (closed)
Opened 11 years ago
Closed 10 years ago
BUG: Back import from FLIMfit - channels black
| Reported by: | pwalczysko | Owned by: | jburel |
|---|---|---|---|
| Priority: | major | Milestone: | 5.1.0-m1 |
| Component: | Insight | Version: | 4.4.9 |
| Keywords: | FLIM, float | Cc: | ux@…, jamoore |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
When FLIM image is fitted using FLIMfit program, the resulting images can be back imported into OMERO as a multichannel images.
In Insight and Web, these images appear to have only one channel which is not black. This is the first (red) channel, with tau-1 values.
The other channels (in the present example 3 other channels, named IO, I and chi2, are just black.
When the same fitted dataset result is exported from FLIMfit and saved on my local machine, the 4 images look nice and sensible.
Possibly this is because the images are float ? - maybe there is already another ticket.
Just creating this one to make following point - this bug is stopping the proper usage of OMERO by FLIMfit.
See screenshots.
Attachments (2)
Change History (6)
Changed 11 years ago by pwalczysko
Changed 11 years ago by pwalczysko
comment:1 Changed 11 years ago by pwalczysko
- Cc jamoore added
comment:2 Changed 11 years ago by jburel
- Milestone changed from OMERO-4.4.x to OMERO-4.4.9
- Sprint changed from 2013-05-07 (8) to Blocker 4.4.9 (1)
comment:3 Changed 10 years ago by jburel
- Milestone changed from OMERO-4.4.x to 5.0.0
- Version set to 4.4.9
Related to rendering float issue.
If you use "log" to map, you should be able to see the data.
comment:4 Changed 10 years ago by jburel
- Milestone changed from 5.x to 5.1.0-m1
- Resolution set to fixed
- Status changed from new to closed
Float support has been added in 5.1.0-m1
There is a remaining with FLIMfit generated image (no stats added to DB). This point needs to be discussed with Ian next week.
Already linked to https://trello.com/c/yKLwAyQS/27-rendering-support-for-images-with-deviant-dynamic-ranges
Moved from sprint 2013-05-07 (8)