Task #10717 (closed)
Opened 11 years ago
Closed 11 years ago
BUG: Import of flex from skyking fails
Reported by: | pwalczysko | Owned by: | |
---|---|---|---|
Priority: | major | Milestone: | 5.0.0-beta1 |
Component: | Import | Version: | n.a. |
Keywords: | FS | Cc: | ux@…, fs@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | FS Demo 3 |
Description
File:
from_skyking/flex/karsten/Opera/Reference Data/Meas_01(2008-06-12_12-32-02)...
Importing to Gretzky using build OMERO.insight-5.0.0-alpha1-991-5003e8b-dirty-ice33-b230-mac
loci.formats.MissingLibraryException: The LuraWave decoding library, lwf_jsdk2.6.jar, is required to decode this file. Please make sure it is present in your classpath. at loci.formats.codec.LuraWaveCodec.initialize(LuraWaveCodec.java:168) at loci.formats.codec.LuraWaveCodec.decompress(LuraWaveCodec.java:100) at loci.formats.tiff.TiffCompression.decompress(TiffCompression.java:278) at loci.formats.tiff.TiffParser.getTile(TiffParser.java:699) at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:916) at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:739) at loci.formats.in.FlexReader.openBytes(FlexReader.java:255) at loci.formats.ImageReader.openBytes(ImageReader.java:414) at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:197) at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:226) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:317) at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273) at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:885) at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:810) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:586) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6736) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1318) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) Caused by: Unable to instantiate service for interface loci.formats.services.LuraWaveService at loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:173) at loci.formats.codec.LuraWaveCodec.initialize(LuraWaveCodec.java:165) ... 26 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:171) ... 27 more Caused by: java.lang.NoClassDefFoundError: com/luratech/lwf/lwfDecoder at loci.formats.services.LuraWaveServiceImpl.<init>(LuraWaveServiceImpl.java:89) ... 32 more at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6790) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1318) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) Caused by: loci.formats.MissingLibraryException: The LuraWave decoding library, lwf_jsdk2.6.jar, is required to decode this file. Please make sure it is present in your classpath. at loci.formats.codec.LuraWaveCodec.initialize(LuraWaveCodec.java:168) at loci.formats.codec.LuraWaveCodec.decompress(LuraWaveCodec.java:100) at loci.formats.tiff.TiffCompression.decompress(TiffCompression.java:278) at loci.formats.tiff.TiffParser.getTile(TiffParser.java:699) at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:916) at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:739) at loci.formats.in.FlexReader.openBytes(FlexReader.java:255) at loci.formats.ImageReader.openBytes(ImageReader.java:414) at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:197) at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:226) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:317) at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273) at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:885) at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:810) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:586) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6736) ... 11 more Caused by: Unable to instantiate service for interface loci.formats.services.LuraWaveService at loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:173) at loci.formats.codec.LuraWaveCodec.initialize(LuraWaveCodec.java:165) ... 26 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:171) ... 27 more Caused by: java.lang.NoClassDefFoundError: com/luratech/lwf/lwfDecoder at loci.formats.services.LuraWaveServiceImpl.<init>(LuraWaveServiceImpl.java:89) ... 32 more
Change History (1)
comment:1 Changed 11 years ago by mlinkert
- Resolution set to invalid
- Status changed from new to closed
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That is expected and not a bug. Some of the data in from_skyking/flex/ needs an extra .jar, which we can't distribute.
See #4165.