Task #10743 (closed)
Opened 11 years ago
Closed 11 years ago
Bug: fix CellSens TIFF metadata support
| Reported by: | omero-qa | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-4.4.7 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | rwyeth@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
https://www.openmicroscopy.org/qa2/qa2/qa/feedback/5025/
Comment: This is an Olympus CellSens? tiff file. Meta data from this file is not imported into FIJI via Bio-Formats. Here is the metadata available from the cells sens viewer software. I am particularly interested in X/Y calibration and exposure time.
[Document]
Name=Arbacia 2week ADL.tif
Path=C:\Users\Public\Documents\Katelyn\Arbacia\Arbacia 2week ADL.tif
Author=cbishop
Creation Time=11/7/2012 11:29:57 AM
Note=
Company=Saint Francis Xavier University
Product Version=cellSens Dimension 1.6 (Build 9457)
File Size=4.02 MB
[Image]
Layer=Layer 1
Frame Count=1
Channel Count=3
Type=24 bit RGB Color
Color Space=sRGB IEC61966-2.1
Size (pixel)=1360 x 1024
Size (calibrated)=354.4 µm x 266.8 µm
Calibration (X)=260.58 nm/pixel
Calibration (Y)=260.58 nm/pixel
Origin (X)=0 m
Origin (Y)=0 m
Total Magnification=25.2
Memory Usage (uncompressed)=3.98 MB
[Microscope]
Microscope Frame=FRAME_BX53_43_CODED
Objective Lens=UPLSAPO 2 40x / 0.95
Objective Working Distance=180 µm
Objective Description=40x
Numerical Aperture=0.95
Refractive Index=Air (1.0003)
Camera Adapter Magnification=0.63
Device Configuration Name=BX53 Compound scope
[Camera]
Manufacturer=Olympus
Camera Name=DP72
Exposure Time=512 µs
Binning=1 x 1
Gain RGB (White Balance)=0.82; 1.00; 0.59
Offset RGB (Black Balance)=0; 0; 0
Gamma=1.00
Sharpness=2
Mirror (horizontal)=No
Mirror (vertical)=No
Change History (2)
comment:1 Changed 11 years ago by mlinkert
- Component changed from from QA to Bio-Formats
- Milestone changed from Unscheduled to OMERO-4.4.7
- Priority changed from minor to major
comment:2 Changed 11 years ago by mlinkert
- Milestone changed from OMERO-4.4.x to OMERO-4.4.7
- Resolution set to fixed
- Status changed from new to closed
Fixed with https://github.com/openmicroscopy/bioformats/pull/478
This fix will be included in the upcoming 4.4.7 release.