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Task #10743 (closed)

Opened 11 years ago

Closed 11 years ago

Bug: fix CellSens TIFF metadata support

Reported by: omero-qa Owned by: mlinkert
Priority: major Milestone: OMERO-4.4.7
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc: rwyeth@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.



Comment: This is an Olympus CellSens? tiff file. Meta data from this file is not imported into FIJI via Bio-Formats. Here is the metadata available from the cells sens viewer software. I am particularly interested in X/Y calibration and exposure time.

Name=Arbacia 2week ADL.tif
Path=C:\Users\Public\Documents\Katelyn\Arbacia\Arbacia 2week ADL.tif
Creation Time=11/7/2012 11:29:57 AM
Company=Saint Francis Xavier University
Product Version=cellSens Dimension 1.6 (Build 9457)
File Size=4.02 MB
Layer=Layer 1
Frame Count=1
Channel Count=3
Type=24 bit RGB Color
Color Space=sRGB IEC61966-2.1
Size (pixel)=1360 x 1024
Size (calibrated)=354.4 µm x 266.8 µm
Calibration (X)=260.58 nm/pixel
Calibration (Y)=260.58 nm/pixel
Origin (X)=0 m
Origin (Y)=0 m
Total Magnification=25.2
Memory Usage (uncompressed)=3.98 MB
Microscope Frame=FRAME_BX53_43_CODED
Objective Lens=UPLSAPO 2 40x / 0.95
Objective Working Distance=180 µm
Objective Description=40x
Numerical Aperture=0.95
Refractive Index=Air (1.0003)
Camera Adapter Magnification=0.63
Device Configuration Name=BX53 Compound scope
Camera Name=DP72
Exposure Time=512 µs
Binning=1 x 1
Gain RGB (White Balance)=0.82; 1.00; 0.59
Offset RGB (Black Balance)=0; 0; 0
Mirror (horizontal)=No
Mirror (vertical)=No


Change History (2)

comment:1 Changed 11 years ago by mlinkert

  • Component changed from from QA to Bio-Formats
  • Milestone changed from Unscheduled to OMERO-4.4.7
  • Priority changed from minor to major

comment:2 Changed 11 years ago by mlinkert

  • Milestone changed from OMERO-4.4.x to OMERO-4.4.7
  • Resolution set to fixed
  • Status changed from new to closed

Fixed with https://github.com/openmicroscopy/bioformats/pull/478

This fix will be included in the upcoming 4.4.7 release.

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