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Task #10903 (new)

Opened 11 years ago

Last modified 8 years ago

Add support for Ariol data

Reported by: mlinkert Owned by:
Priority: major Milestone: Unscheduled
Component: Bio-Formats Version: 5.0.0
Keywords: new-format, external Cc: rleigh, andreas.heindl@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.


See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-May/003716.html and the files in data/ariol/andreas/.

It has been pointed out on the mailing list that the .cat files are an XML header and TIFF file concatenated together.

Change History (3)

comment:1 Changed 11 years ago by mlinkert

  • Cc andreas.heindl@… added

comment:2 Changed 10 years ago by mlinkert

  • Keywords new-format added
  • Version set to 5.0.0

comment:3 Changed 8 years ago by mlinkert

  • Keywords external added
  • Owner mlinkert deleted

Note that the ariol/andreas data is a different format from the ariol/karen data, so covering both will likely require two readers. The ariol/karen data should be fairly straightforward to support, as pixel data is stored in separate JPEG files and the metadata is in a fairly readable XML file. The ariol/andreas data is going to be a little trickier; as noted above, it is XML concatenated with TIFF, but keep in mind that multiple TIFF files have been concatenated, so take care to check that the whole file is read.

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