Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #10903 (new)

Opened 7 years ago

Last modified 4 years ago

Add support for Ariol data

Reported by: mlinkert Owned by:
Priority: major Milestone: Unscheduled
Component: Bio-Formats Version: 5.0.0
Keywords: new-format, external Cc: rleigh, andreas.heindl@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-May/003716.html and the files in data/ariol/andreas/.

It has been pointed out on the mailing list that the .cat files are an XML header and TIFF file concatenated together.

Change History (3)

comment:1 Changed 7 years ago by mlinkert

  • Cc andreas.heindl@… added

comment:2 Changed 6 years ago by mlinkert

  • Keywords new-format added
  • Version set to 5.0.0

comment:3 Changed 4 years ago by mlinkert

  • Keywords external added
  • Owner mlinkert deleted

Note that the ariol/andreas data is a different format from the ariol/karen data, so covering both will likely require two readers. The ariol/karen data should be fairly straightforward to support, as pixel data is stored in separate JPEG files and the metadata is in a fairly readable XML file. The ariol/andreas data is going to be a little trickier; as noted above, it is XML concatenated with TIFF, but keep in mind that multiple TIFF files have been concatenated, so take care to check that the whole file is read.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.129769 sec.)

We're Hiring!