Import and metadata

[jburel]

The user will be now able to close the window after uploading the image.
This implies that annotating the image when the import is finished will no longer work.
We need to have the ability to pass annotation to the server.
The annotation will be linked to the object server-side when the import is finished.

We could use the ImportSettings object

[jburel]

Using the ImportSettings object to specify the annotation does not work. The annotation is not linked to the imported image.
Same if you do ic.setCustomAnnotationList(l);

This is a major regression

[jamoore]

Tested via CLI and basic usage works:

(ome1)jamoore@blue:/opt/ome2$ dist/bin/omero -s root@localhost -w ome import dist/insight.fake --annotation_ns FOO --annotation_text BAR
...
2013-05-23 10:52:36,619 6466       [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor  - IMPORT_DONE Imported file: /opt/ome2/dist/insight.fake
Imported pixels:
302
Other imported objects:
Fileset:302
Image:302
2013-05-23 10:52:36,619 6466       [l.Client-0] INFO      ome.formats.importer.cli.ErrorHandler  - Number of errors: 0
(ome1)jamoore@blue:/opt/ome2$ psql -U omero -h localhost ome2
Password for user omero: 
psql (9.1.9)
SSL connection (cipher: DHE-RSA-AES256-SHA, bits: 256)
Type "help" for help.

ome2=> select * from annotation order by id desc limit 10;
ome2=> select * from annotation order by id desc limit 10;
ome2=> select * from imageannotationlink order by id desc limit 10;
 id | permissions | version | child | creation_id | external_id | group_id | owner_id | update_id | parent 
----+-------------+---------+-------+-------------+-------------+----------+----------+-----------+--------
  1 |        -120 |       0 |   302 |        2222 |             |        0 |        0 |      2222 |    302
(1 row)

ome2=> select * from annotation order by id desc limit 10;
ome2=> select * from annotation where ns = 'FOO' order by id desc limit 10;
    discriminator     | id  | description | permissions | ns  | version | boolvalue | textvalue | doublevalue | longvalue | termvalue | timevalue | creation_id | external_id | group_id | owner_id | update_id | file 
----------------------+-----+-------------+-------------+-----+---------+-----------+-----------+-------------+-----------+-----------+-----------+-------------+-------------+----------+----------+-----------+------
 /basic/text/comment/ | 302 |             |        -120 | FOO |         |           | BAR       |             |           |           |           |        2222 |             |        0 |        0 |      2222 |     
(1 row)

Now looking into insight.

[jburel]

At the moment the code has been removed,
i can add it if required.

[jburel]

I was looking at tags I don't think it will make a difference

[jamoore]

PR filed : ​https://github.com/openmicroscopy/openmicroscopy/pull/1206

[jburel]

Commit cherry-picked see ​https://github.com/openmicroscopy/openmicroscopy/pull/1191

[jburel <j.burel@…>]

(In [d45d47a02bf42769c3accf453f2c8e300c21d41b/ome.git] on branch develop) Set annotation list in OmeroImageServiceImpl? (Fix #10904)