Task #11059 (closed)
Opened 11 years ago
Closed 10 years ago
OMERO.searcher should work with screens/plates/wells, not just images
| Reported by: | spli | Owned by: | spli |
|---|---|---|---|
| Priority: | minor | Milestone: | Partner-1 |
| Component: | Scripting | Version: | 4.4.9 |
| Keywords: | searcher | Cc: | analysis@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description
Each well is backed by one or more images, so I think the steps are:
- change the feature calculation script to dig out the images from selected screens/plates/wells
- Activate the searcher plugin for wells, and if multiple fields are present figure out which image to use.
Change History (8)
comment:1 Changed 11 years ago by spli
- Milestone changed from Unscheduled to OMERO-4.4.10
- Version set to 4.4.9
comment:2 Changed 11 years ago by spli
- Summary changed from OMERO.searcher should work with wells, not just images to OMERO.searcher should work with screens/plates/wells, not just images
comment:3 Changed 11 years ago by icao-berg-x
in omero, a well/screen/etc is a collection of images or a unique object? are they aggregators?
comment:4 Changed 11 years ago by spli
Effectively a well contains multiple images. I'm happy to handle this. If it's too difficult we can drop it for the release, it's just that it would be really useful since we've got several HCS screens we want to play with.
comment:5 Changed 11 years ago by icao-berg-x
no problemo with making that happen. the issue is the content db. since we use the image id as part of the key. i guess each screen has their own ids, but do each image in the screen/plate/well get their own image ids?
comment:6 Changed 11 years ago by spli
- Milestone changed from OMERO-4.4.10 to 5.0.0-beta2
- Remaining Time set to 1
- Sprint set to OMERO 5 Beta 2 (1)
- Status changed from new to accepted
comment:7 Changed 10 years ago by spli
- Milestone changed from 5.0.0-beta2 to Partner-1
- Sprint OMERO 5 Beta 2 (1) deleted
comment:8 Changed 10 years ago by spli
- Remaining Time changed from 1 to 0
- Resolution set to fixed
- Status changed from accepted to closed
PR opened https://github.com/openmicroscopy/omero_searcher/pull/16
To be reviewed next year.
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Moving this to OMERO-4.4.10 since it would make searcher much more useful and it doesn't look too difficult tio implement (in theory....), if not will postpone.