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Task #11089 (closed)

Opened 6 years ago

Closed 6 years ago

Last modified 6 years ago

BUG: Loss of connection after Move

Reported by: pwalczysko Owned by: jburel
Priority: blocker Milestone: 5.0.0-beta1
Component: Insight Version: n.a.
Keywords: n.a. Cc: ux@…, fs@…, sbesson, hflynn
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: FS demo 4.4

Description

Happened during the demo 4_3 on 07-06-13 at approx 12:37 (see the attached log).
After a 5-image MIF was moved back and forth between groups read-only-1 and read-write-1 (not targeted moves, orphaned images only), a crash with popup reporting the loss of connection happened.

For detailed workflow see the movie "demo 4_3" on team/pwalczysko/demo 4_3/demo 4_3.mov" - time on the movie 22:44 - 25:46.

The exception from the Inishgt log :

2013-06-07 12:37:22,770 DEBUG [copy.shoola.env.data.DataServicesFactory] (Thread-339) Connection ErrorIce.ObjectNotExistException
    id.name = "2b3981e6-3d11-495f-a5d1-e5302c5213b2omero.api.ThumbnailStore"
    id.category = "45575535-47c1-492b-8436-f811e82ff6cb"
    facet = ""
    operation = "setPixelsId"
	at IceInternal.Outgoing.invoke(Outgoing.java:147)
	at omero.api._ThumbnailStoreDelM.setPixelsId(_ThumbnailStoreDelM.java:903)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1279)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1251)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1973)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3354)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnail(OMEROGateway.java:3331)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:544)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.loadThumbail(ThumbnailLoader.java:128)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.access$700(ThumbnailLoader.java:73)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader$2.doCall(ThumbnailLoader.java:198)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Connection ErrorIce.ObjectNotExistException
    id.name = "2b3981e6-3d11-495f-a5d1-e5302c5213b2omero.api.ThumbnailStore"
    id.category = "45575535-47c1-492b-8436-f811e82ff6cb"
    facet = ""
    operation = "setPixelsId"
	at IceInternal.Outgoing.invoke(Outgoing.java:147)
	at omero.api._ThumbnailStoreDelM.setPixelsId(_ThumbnailStoreDelM.java:903)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1279)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1251)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1973)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3354)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnail(OMEROGateway.java:3331)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:544)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.loadThumbail(ThumbnailLoader.java:128)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.access$700(ThumbnailLoader.java:73)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader$2.doCall(ThumbnailLoader.java:198)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Exception in thread "Thread-339"

2013-06-07 12:37:23,823 DEBUG [copy.shoola.env.data.DataServicesFactory] (Thread-339) Connection ErrorIce.CommunicatorDestroyedException
	at IceInternal.Instance.objectAdapterFactory(Instance.java:122)
	at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997)
	at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946)
	at omero.api.ThumbnailStorePrxHelper.getThumbnail(ThumbnailStorePrxHelper.java:596)
	at omero.api.ThumbnailStorePrxHelper.getThumbnail(ThumbnailStorePrxHelper.java:570)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3361)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnail(OMEROGateway.java:3331)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:544)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.loadThumbail(ThumbnailLoader.java:128)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.access$700(ThumbnailLoader.java:73)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader$2.doCall(ThumbnailLoader.java:198)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Connection ErrorIce.CommunicatorDestroyedException
	at IceInternal.Instance.objectAdapterFactory(Instance.java:122)
	at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997)
	at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946)
	at omero.api.ThumbnailStorePrxHelper.getThumbnail(ThumbnailStorePrxHelper.java:596)
	at omero.api.ThumbnailStorePrxHelper.getThumbnail(ThumbnailStorePrxHelper.java:570)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3361)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnail(OMEROGateway.java:3331)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:544)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.loadThumbail(ThumbnailLoader.java:128)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.access$700(ThumbnailLoader.java:73)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader$2.doCall(ThumbnailLoader.java:198)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Exception in thread "Thread-339"

2013-06-07 12:37:28,666 ERROR [ola.env.data.views.calls.ThumbnailLoader] (Thread-339) Cannot retrieve thumbnail: org.openmicroscopy.shoola.env.rnd.RenderingServiceException: Get Thumbnail
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:551)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.loadThumbail(ThumbnailLoader.java:128)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.access$700(ThumbnailLoader.java:73)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader$2.doCall(ThumbnailLoader.java:198)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.rnd.RenderingServiceException: Cannot get thumbnail
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3370)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnail(OMEROGateway.java:3331)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:544)
	... 10 more
Caused by: Ice.CommunicatorDestroyedException
	at IceInternal.Instance.objectAdapterFactory(Instance.java:122)
	at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997)
	at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946)
	at omero.api.ThumbnailStorePrxHelper.getThumbnail(ThumbnailStorePrxHelper.java:596)
	at omero.api.ThumbnailStorePrxHelper.getThumbnail(ThumbnailStorePrxHelper.java:570)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3361)
	... 12 more

2013-06-07 12:37:28,698 DEBUG [copy.shoola.env.data.DataServicesFactory] (Thread-339) Connection ErrorIce.CommunicatorDestroyedException
	at IceInternal.OutgoingConnectionFactory.findConnectionByEndpoint(OutgoingConnectionFactory.java:451)
	at IceInternal.OutgoingConnectionFactory.create(OutgoingConnectionFactory.java:265)
	at IceInternal.RoutableReference.createConnection(RoutableReference.java:848)
	at IceInternal.RoutableReference$1.setEndpoints(RoutableReference.java:484)
	at IceInternal.RouterInfo.getClientEndpoints(RouterInfo.java:92)
	at IceInternal.RoutableReference.getConnection(RoutableReference.java:476)
	at IceInternal.ConnectRequestHandler.connect(ConnectRequestHandler.java:41)
	at Ice._ObjectDelM.setup(_ObjectDelM.java:275)
	at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:1007)
	at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1277)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1251)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1973)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3354)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnail(OMEROGateway.java:3331)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:544)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.loadThumbail(ThumbnailLoader.java:128)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.access$700(ThumbnailLoader.java:73)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader$2.doCall(ThumbnailLoader.java:198)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Connection ErrorIce.CommunicatorDestroyedException
	at IceInternal.OutgoingConnectionFactory.findConnectionByEndpoint(OutgoingConnectionFactory.java:451)
	at IceInternal.OutgoingConnectionFactory.create(OutgoingConnectionFactory.java:265)
	at IceInternal.RoutableReference.createConnection(RoutableReference.java:848)
	at IceInternal.RoutableReference$1.setEndpoints(RoutableReference.java:484)
	at IceInternal.RouterInfo.getClientEndpoints(RouterInfo.java:92)
	at IceInternal.RoutableReference.getConnection(RoutableReference.java:476)
	at IceInternal.ConnectRequestHandler.connect(ConnectRequestHandler.java:41)
	at Ice._ObjectDelM.setup(_ObjectDelM.java:275)
	at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:1007)
	at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1277)
	at omero.api.ThumbnailStorePrxHelper.setPixelsId(ThumbnailStorePrxHelper.java:1251)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1973)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.retrieveThumbnail(OMEROGateway.java:3354)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnail(OMEROGateway.java:3331)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getThumbnail(OmeroImageServiceImpl.java:544)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.loadThumbail(ThumbnailLoader.java:128)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader.access$700(ThumbnailLoader.java:73)
	at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailLoader$2.doCall(ThumbnailLoader.java:198)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Exception in thread "Thread-339"

2013-06-07 12:37:40,337 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1060372480
2013-06-07 12:37:40,343 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel
2013-06-07 12:37:46,378 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 5.0.0
Client version: 5.0.0-alpha4-331-c50aa6a-dirty-ice33-b300
os_name: Mac OS X
os_arch: x86_64
java_version: 1.6.0_45
os_version: 10.8.3

2013-06-07 12:37:46,527 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk
User Name: user-4 -- Password: ***

Change History (5)

comment:1 Changed 6 years ago by jburel

  • Sprint changed from FS Demo 4.3 to FS demo 4.4

comment:2 Changed 6 years ago by jburel

  • Remaining Time set to 0.5
  • Status changed from new to accepted

comment:3 Changed 6 years ago by jburel

The problem was due to the fact that the wrong "Orphaned container" was displayed i.e. only the user information in the path and not the group.

comment:4 Changed 6 years ago by jburel

  • Remaining Time changed from 0.5 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

see ​https://github.com/openmicroscopy/openmicroscopy/pull/1265

comment:5 Changed 6 years ago by jburel <j.burel@…>

(In [9127671daae4e64a48950fb3f0686e6e2ee7bfc9/ome.git] on branch develop) Fix browsing of orphaned container. (see #11089)

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