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Task #11114 (new)

Opened 6 years ago

Last modified 3 years ago

Bug: Network/HTTP access in awt thread on linux

Reported by: jamoore Owned by: jburel
Priority: major Milestone: Unscheduled
Component: Insight Version: n.a.
Keywords: n.a. Cc: ux@…, bpindelski, mtbcarroll
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description 

"AWT-EventQueue-0" prio=10 tid=0x00007f58b83d0000 nid=0x79bb runnable [0x00007f58a7689000]
   java.lang.Thread.State: RUNNABLE
        at java.net.PlainSocketImpl.socketConnect(Native Method)
        at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
        - locked <0x00000000ef4f12f8> (a java.net.SocksSocketImpl)
        at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
        at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
        at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:391)
        at java.net.Socket.connect(Socket.java:579)
        at java.net.Socket.connect(Socket.java:528)
        at sun.net.NetworkClient.doConnect(NetworkClient.java:180)
        at sun.net.www.http.HttpClient.openServer(HttpClient.java:378)
        at sun.net.www.http.HttpClient.openServer(HttpClient.java:473)
        - locked <0x00000000ef4f1270> (a sun.net.www.http.HttpClient)
        at sun.net.www.http.HttpClient.<init>(HttpClient.java:203)
        at sun.net.www.http.HttpClient.New(HttpClient.java:290)
        at sun.net.www.http.HttpClient.New(HttpClient.java:306)
        at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:995)
        at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:931)
        at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:849)
        at sun.net.www.protocol.http.HttpURLConnection.followRedirect(HttpURLConnection.java:2397)
        at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1556)
        - locked <0x00000000ef4e01c0> (a sun.net.www.protocol.http.HttpURLConnection)
        at java.net.URL.openStream(URL.java:1037)
        at org.openmicroscopy.shoola.util.NetworkChecker.isNetworkup(NetworkChecker.java:115)
        at org.openmicroscopy.shoola.env.data.OMEROGateway.isNetworkUp(OMEROGateway.java:462)
        at org.openmicroscopy.shoola.env.data.OMEROGateway.logout(OMEROGateway.java:2674)
        at org.openmicroscopy.shoola.env.data.DataServicesFactory.shutdown(DataServicesFactory.java:698)
        at org.openmicroscopy.shoola.env.data.DataServicesFactory.exitApplication(DataServicesFactory.java:762)
        at org.openmicroscopy.shoola.env.ui.TaskBarManager.exitApplication(TaskBarManager.java:664)
        at org.openmicroscopy.shoola.env.ui.TaskBarManager.doExit(TaskBarManager.java:592)
        at org.openmicroscopy.shoola.env.ui.TaskBarManager.eventFired(TaskBarManager.java:1027)
        at org.openmicroscopy.shoola.env.event.EventBusImpl.dispatch(EventBusImpl.java:91)
        at org.openmicroscopy.shoola.env.event.EventBusImpl.post(EventBusImpl.java:222)
        at org.openmicroscopy.shoola.agents.treeviewer.actions.ExitApplicationAction.actionPerformed(ExitApplicationAction.java:112
)
        at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
        at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
        at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
        at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
        at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
        at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
        at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
        at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
        at java.awt.Component.processMouseEvent(Component.java:6505)
        at javax.swing.JComponent.processMouseEvent(JComponent.java:3312)
        at java.awt.Component.processEvent(Component.java:6270)
        at java.awt.Container.processEvent(Container.java:2229)
        at java.awt.Component.dispatchEventImpl(Component.java:4861)
        at java.awt.Container.dispatchEventImpl(Container.java:2287)
        at java.awt.Component.dispatchEvent(Component.java:4687)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
        at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
        at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
        at java.awt.Container.dispatchEventImpl(Container.java:2273)
        at java.awt.Window.dispatchEventImpl(Window.java:2719)
        at java.awt.Component.dispatchEvent(Component.java:4687)
        at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:729)
        at java.awt.EventQueue.access$200(EventQueue.java:103)
        at java.awt.EventQueue$3.run(EventQueue.java:688)
        at java.awt.EventQueue$3.run(EventQueue.java:686)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
        at java.awt.EventQueue$4.run(EventQueue.java:702)
        at java.awt.EventQueue$4.run(EventQueue.java:700)

This is on my isSessionAlive-related branch.

Attachments (1)

awt-traces.log​ (225.1 KB) - added by jamoore 6 years ago.
Stack traces of getConnector on AWT thread from omeroinsight.log (see patch for re-creating)

Download all attachments as: .zip

Change History (13)

comment:1 Changed 6 years ago by jamoore

Also saw a client.__del__() in the awt thread. Lost the stack trace unfortunately.

comment:2 Changed 6 years ago by jamoore

Found call to rendering on AWT thread:

"AWT-EventQueue-0" prio=10 tid=0x00007f86c03c6000 nid=0x2e05 in Object.wait() [0x00007f86ffefb000]
   java.lang.Thread.State: WAITING (on object monitor)
        at java.lang.Object.wait(Native Method)
        - waiting on <0x00000000ecaf7590> (a IceInternal.Outgoing)
        at java.lang.Object.wait(Object.java:503)
        at IceInternal.Outgoing.invoke(Outgoing.java:109)
        - locked <0x00000000ecaf7590> (a IceInternal.Outgoing)
        at omero.api._RenderingEngineDelM.renderAsPackedInt(_RenderingEngineDelM.java:1629)
        at omero.api.RenderingEnginePrxHelper.renderAsPackedInt(RenderingEnginePrxHelper.java:5553)
        at omero.api.RenderingEnginePrxHelper.renderAsPackedInt(RenderingEnginePrxHelper.java:5526)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.renderUncompressed(RenderingControlProxy.java:570)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1733)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.render(RenderingControlProxy.java:1708)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererModel.render(RendererModel.java:1264)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererComponent.renderPlane(RendererComponent.java:959)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerModel.fireImageRetrieval(ImViewerModel.java:947)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent.renderXYPlane(ImViewerComponent.java:1142)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent.setChannelSelection(ImViewerComponent.java:1089)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerControl.propertyChange(ImViewerControl.java:951)
        at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
        at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
        at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:263)
        at java.awt.Component.firePropertyChange(Component.java:8382)
        at org.openmicroscopy.shoola.agents.util.ui.ChannelButton.setChannelSelected(ChannelButton.java:118)
        at org.openmicroscopy.shoola.agents.util.ui.ChannelButton.onClick(ChannelButton.java:130)
        at org.openmicroscopy.shoola.agents.util.ui.ChannelButton.access$000(ChannelButton.java:61)
        at org.openmicroscopy.shoola.agents.util.ui.ChannelButton$1.mousePressed(ChannelButton.java:229)
        at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:280)
        at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:279)
        at java.awt.Component.processMouseEvent(Component.java:6502)
        at javax.swing.JComponent.processMouseEvent(JComponent.java:3312)

comment:3 Changed 6 years ago by jburel

The calls to RE are not asynchronous (only for big images) That will have to be reviewed later on. It used to be but we decided not to follow that path.
It should not be too hard to fix

comment:4 Changed 6 years ago by jamoore

setResolutionLevel on the AWT thread:

"AWT-EventQueue-0" prio=10 tid=0x00007fae583f8000 nid=0x1c85 in Object.wait() [0x00007fae9d08b000]
   java.lang.Thread.State: WAITING (on object monitor)
        at java.lang.Object.wait(Native Method)
        - waiting on <0x00000000eacc6488> (a IceInternal.Outgoing)
        at java.lang.Object.wait(Object.java:503)
        at IceInternal.Outgoing.invoke(Outgoing.java:109)
        - locked <0x00000000eacc6488> (a IceInternal.Outgoing)
        at omero.api._RenderingEngineDelM.setResolutionLevel(_RenderingEngineDelM.java:263)
        at omero.api.RenderingEnginePrxHelper.setResolutionLevel(RenderingEnginePrxHelper.java:1148)
        at omero.api.RenderingEnginePrxHelper.setResolutionLevel(RenderingEnginePrxHelper.java:1115)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.setSelectedResolutionLevel(RenderingControlProxy.java:2119)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.setSelectedResolutionLevel(RenderingControlProxy.java:2123)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.getResolutionDescriptions(RenderingControlProxy.java:2197)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererModel.getResolutionDescriptions(RendererModel.java:1534)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererComponent.getResolutionDescriptions(RendererComponent.java:1223)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerModel.onRndLoaded(ImViewerModel.java:1000)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent.onRndLoaded(ImViewerComponent.java:2904)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerControl.propertyChange(ImViewerControl.java:974)
        at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
        at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerComponent.onRndLoaded(MetadataViewerComponent.java:849)
        at org.openmicroscopy.shoola.agents.metadata.editor.EditorModel.onRndLoaded(EditorModel.java:3406)
        at org.openmicroscopy.shoola.agents.metadata.editor.EditorComponent.setRenderingControl(EditorComponent.java:698)
        at org.openmicroscopy.shoola.agents.metadata.RenderingControlLoader.handleResult(RenderingControlLoader.java:167)
        at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:90)
        at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
        at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:251)
        at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:727)
        at java.awt.EventQueue.access$200(EventQueue.java:103)
        at java.awt.EventQueue$3.run(EventQueue.java:688)
        at java.awt.EventQueue$3.run(EventQueue.java:686)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:697)
        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)

comment:5 Changed 6 years ago by jamoore

setQuantizationMap:

"AWT-EventQueue-0" prio=10 tid=0x00007fae583f8000 nid=0x1c85 in Object.wait() [0x00007fae9d08a000]
   java.lang.Thread.State: WAITING (on object monitor)
        at java.lang.Object.wait(Native Method)
        - waiting on <0x00000000ed264068> (a IceInternal.Outgoing)
        at java.lang.Object.wait(Object.java:503)
        at IceInternal.Outgoing.invoke(Outgoing.java:109)
        - locked <0x00000000ed264068> (a IceInternal.Outgoing)
        at omero.api._RenderingEngineDelM.setQuantizationMap(_RenderingEngineDelM.java:2417)
        at omero.api.RenderingEnginePrxHelper.setQuantizationMap(RenderingEnginePrxHelper.java:8099)
        at omero.api.RenderingEnginePrxHelper.setQuantizationMap(RenderingEnginePrxHelper.java:8072)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.setQuantizationMap(RenderingControlProxy.java:1210)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.resetSettings(RenderingControlProxy.java:1637)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.resetSettings(RenderingControlProxy.java:1644)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererModel.resetSettings(RendererModel.java:1175)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererComponent.resetSettings(RendererComponent.java:851)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerModel.resetMappingSettings(ImViewerModel.java:1686)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent.saveOnClose(ImViewerComponent.java:414)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent.close(ImViewerComponent.java:3134)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerControl$3.windowClosing(ImViewerControl.java:537)
        at java.awt.AWTEventMulticaster.windowClosing(AWTEventMulticaster.java:349)
        at java.awt.AWTEventMulticaster.windowClosing(AWTEventMulticaster.java:349)
        at java.awt.Window.processWindowEvent(Window.java:2051)
        at javax.swing.JFrame.processWindowEvent(JFrame.java:290)
        at java.awt.Window.processEvent(Window.java:2009)
        at java.awt.Component.dispatchEventImpl(Component.java:4861)
        at java.awt.Container.dispatchEventImpl(Container.java:2287)
        at java.awt.Window.dispatchEventImpl(Window.java:2719)
        at java.awt.Component.dispatchEvent(Component.java:4687)
        at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:729)
        at java.awt.EventQueue.access$200(EventQueue.java:103)
        at java.awt.EventQueue$3.run(EventQueue.java:688)
        at java.awt.EventQueue$3.run(EventQueue.java:686)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
        at java.awt.EventQueue$4.run(EventQueue.java:702)
        at java.awt.EventQueue$4.run(EventQueue.java:700)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:699)
        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)

comment:6 Changed 6 years ago by jamoore

setSelectedResolutionLevel & isSessionAlive which may also invoke the NetworkChecker?:

"AWT-EventQueue-0" prio=10 tid=0x00007f84843b8000 nid=0x1f98 in Object.wait() [0x00007f847eac5000]
   java.lang.Thread.State: WAITING (on object monitor)
        at java.lang.Object.wait(Native Method)
        - waiting on <0x00000000ed7676e8> (a IceInternal.Outgoing)
        at java.lang.Object.wait(Object.java:503)
        at IceInternal.Outgoing.invoke(Outgoing.java:109)
        - locked <0x00000000ed7676e8> (a IceInternal.Outgoing)
        at Ice._ObjectDelM.ice_ping(_ObjectDelM.java:68)
        at Ice.ObjectPrxHelperBase.ice_ping(ObjectPrxHelperBase.java:290)
        at Ice.ObjectPrxHelperBase.ice_ping(ObjectPrxHelperBase.java:259)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.isSessionAlive(RenderingControlProxy.java:805)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.setSelectedResolutionLevel(RenderingControlProxy.java:2117)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.setSelectedResolutionLevel(RenderingControlProxy.java:2123)
        at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.getResolutionDescriptions(RenderingControlProxy.java:2197)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererModel.getResolutionDescriptions(RendererModel.java:1534)
        at org.openmicroscopy.shoola.agents.metadata.rnd.RendererComponent.getResolutionDescriptions(RendererComponent.java:1223)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerModel.onRndLoaded(ImViewerModel.java:1000)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent.onRndLoaded(ImViewerComponent.java:2904)
        at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerControl.propertyChange(ImViewerControl.java:974)
        at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
        at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerComponent.onRndLoaded(MetadataViewerComponent.java:849)
        at org.openmicroscopy.shoola.agents.metadata.editor.EditorModel.onRndLoaded(EditorModel.java:3406)
        at org.openmicroscopy.shoola.agents.metadata.editor.EditorComponent.setRenderingControl(EditorComponent.java:698)
        at org.openmicroscopy.shoola.agents.metadata.RenderingControlLoader.handleResult(RenderingControlLoader.java:167)
        at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:90)
        at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
        at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:251)
        at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:727)
        at java.awt.EventQueue.access$200(EventQueue.java:103)
        at java.awt.EventQueue$3.run(EventQueue.java:688)
        at java.awt.EventQueue$3.run(EventQueue.java:686)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:697)
        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)

comment:7 Changed 6 years ago by jburel

before any call to the RE proxy the method isNetwork up is invoked.
We could, for now, always return true and fix the underline issue .

comment:8 Changed 6 years ago by jamoore

Not exactly a remote call on the AWT thread but GUI is hung:

"AWT-EventQueue-0" prio=10 tid=0x00007ff3243ef800 nid=0x4342 waiting on condition [0x00007ff31d8a3000]
   java.lang.Thread.State: WAITING (parking)
        at sun.misc.Unsafe.park(Native Method)
        - parking to wait for  <0x00000000c238e830> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
        at java.util.concurrent.locks.LockSupport.park(LockSupport.java:186)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2043)
        at java.awt.EventQueue.getNextEvent(EventQueue.java:537)
        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:211)
        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:154)
        at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:182)
        at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:221)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:219)
        at java.awt.Dialog.show(Dialog.java:1082)
        at java.awt.Component.show(Component.java:1651)
        at java.awt.Component.setVisible(Component.java:1603)
        at java.awt.Window.setVisible(Window.java:1014)
        at java.awt.Dialog.setVisible(Dialog.java:1005)
        at org.openmicroscopy.shoola.util.ui.UIUtilities.setLocationRelativeTo(UIUtilities.java:612)
        at org.openmicroscopy.shoola.util.ui.UIUtilities.setLocationRelativeToAndShow(UIUtilities.java:588)
        at org.openmicroscopy.shoola.agents.imviewer.actions.SaveAction.actionPerformed(SaveAction.java:116)
        at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
        at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
        at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
        at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
        at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
        at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
        at java.awt.Component.processMouseEvent(Component.java:6505)
        at javax.swing.JComponent.processMouseEvent(JComponent.java:3312)
        at java.awt.Component.processEvent(Component.java:6270)
        at java.awt.Container.processEvent(Container.java:2229)
        at java.awt.Component.dispatchEventImpl(Component.java:4861)
        at java.awt.Container.dispatchEventImpl(Container.java:2287)
        at java.awt.Component.dispatchEvent(Component.java:4687)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
        at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
        at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
        at java.awt.Container.dispatchEventImpl(Container.java:2273)
        at java.awt.Window.dispatchEventImpl(Window.java:2719)
        at java.awt.Component.dispatchEvent(Component.java:4687)
        at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:729)
        at java.awt.EventQueue.access$200(EventQueue.java:103)
        at java.awt.EventQueue$3.run(EventQueue.java:688)
        at java.awt.EventQueue$3.run(EventQueue.java:686)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
        at java.awt.EventQueue$4.run(EventQueue.java:702)
        at java.awt.EventQueue$4.run(EventQueue.java:700)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:699)
        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)

Other threads aren't doing anything.

comment:9 Changed 6 years ago by jamoore

Previous issue was on Linux (Ubuntu 13.04) caused by clicking crazy. The "Save Image" dialog was hidden in the background which was likey the issue. Perhaps a separate ticket?

comment:10 Changed 6 years ago by jamoore

After recovering from the previous non-Ice hang, found this:

"AWT-EventQueue-0" prio=10 tid=0x00007ff3243ef800 nid=0x4342 in Object.wait() [0x00007ff31d8a3000]
   java.lang.Thread.State: WAITING (on object monitor)
        at java.lang.Object.wait(Native Method)
        - waiting on <0x00000000ead1f620> (a IceInternal.Outgoing)
        at java.lang.Object.wait(Object.java:503)
        at IceInternal.Outgoing.invoke(Outgoing.java:109)
        - locked <0x00000000ead1f620> (a IceInternal.Outgoing)
        at omero.api._RenderingEngineDelM.close(_RenderingEngineDelM.java:2644)
        at omero.api.RenderingEnginePrxHelper.close(RenderingEnginePrxHelper.java:8998)
        at omero.api.RenderingEnginePrxHelper.close(RenderingEnginePrxHelper.java:8961)
        at org.openmicroscopy.shoola.env.data.Connector.close(Connector.java:623)
        at org.openmicroscopy.shoola.env.data.Connector.shutDownRenderingEngine(Connector.java:655)
        at org.openmicroscopy.shoola.env.data.Connector.shutDownServices(Connector.java:583)
        at org.openmicroscopy.shoola.env.data.OMEROGateway.shutDownServices(OMEROGateway.java:3841)
        at org.openmicroscopy.shoola.env.data.OMEROGateway.logout(OMEROGateway.java:2251)
        at org.openmicroscopy.shoola.env.data.DataServicesFactory.shutdown(DataServicesFactory.java:709)
        at org.openmicroscopy.shoola.env.data.DataServicesFactory.exitApplication(DataServicesFactory.java:773)
        at org.openmicroscopy.shoola.env.ui.TaskBarManager.exitApplication(TaskBarManager.java:664)
        at org.openmicroscopy.shoola.env.ui.TaskBarManager.doExit(TaskBarManager.java:596)
        at org.openmicroscopy.shoola.env.ui.TaskBarManager.eventFired(TaskBarManager.java:1027)
        at org.openmicroscopy.shoola.env.event.EventBusImpl.dispatch(EventBusImpl.java:91)
        at org.openmicroscopy.shoola.env.event.EventBusImpl.post(EventBusImpl.java:222)
        at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerComponent.closeWindow(TreeViewerComponent.java:1246)
        at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerControl$2.windowClosing(TreeViewerControl.java:634)
        at java.awt.AWTEventMulticaster.windowClosing(AWTEventMulticaster.java:349)
        at java.awt.AWTEventMulticaster.windowClosing(AWTEventMulticaster.java:349)
        at java.awt.AWTEventMulticaster.windowClosing(AWTEventMulticaster.java:349)
        at java.awt.Window.processWindowEvent(Window.java:2051)
        at javax.swing.JFrame.processWindowEvent(JFrame.java:290)
        at java.awt.Window.processEvent(Window.java:2009)
        at java.awt.Component.dispatchEventImpl(Component.java:4861)
        at java.awt.Container.dispatchEventImpl(Container.java:2287)
        at java.awt.Window.dispatchEventImpl(Window.java:2719)
        at java.awt.Component.dispatchEvent(Component.java:4687)
        at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:729)
        at java.awt.EventQueue.access$200(EventQueue.java:103)
        at java.awt.EventQueue$3.run(EventQueue.java:688)
        at java.awt.EventQueue$3.run(EventQueue.java:686)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
        at java.awt.EventQueue$4.run(EventQueue.java:702)
        at java.awt.EventQueue$4.run(EventQueue.java:700)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:699)
        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)

Changed 6 years ago by jamoore

Stack traces of getConnector on AWT thread from omeroinsight.log (see patch for re-creating)

comment:11 Changed 6 years ago by jamoore

Previous log contains logged stack traces from OMEROGateway.java from one session using the following patch:

(ome1)jamoore@blue:/opt/ome2$ git diff
diff --git a/components/insight/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java b/components/insight/SRC/org/openmicroscop
index 674e18e..2c34a7e 100644
--- a/components/insight/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java
+++ b/components/insight/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java
@@ -66,6 +66,7 @@ import org.openmicroscopy.shoola.env.data.util.PojoMapper;
 import org.openmicroscopy.shoola.env.data.util.SearchDataContext;
 import org.openmicroscopy.shoola.env.data.util.SecurityContext;
 import org.openmicroscopy.shoola.env.data.util.StatusLabel;
+import org.openmicroscopy.shoola.env.log.LogMessage;
 import org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory;
 import org.openmicroscopy.shoola.env.rnd.RenderingServiceException;
 import org.openmicroscopy.shoola.env.rnd.RndProxyDef;
@@ -1466,7 +1467,7 @@ class OMEROGateway
            boolean permitNull)
        throws DSOutOfServiceException
    {
-
+       checkAWTThread();
        try {
             isNetworkUp(); // Need safe version?
         } catch (Exception e1) {
@@ -8380,4 +8381,12 @@ class OMEROGateway
        return null;
    }
 
+   void checkAWTThread() {
+       String threadName = Thread.currentThread().getName();
+       if (threadName.contains("AWT")) {
+           LogMessage mg = new LogMessage();
+           new RuntimeException(threadName + " detected!").printStackTrace(mg);
+           dsFactory.getLogger().warn(this, mg);
+       }
+   }
 }

Once the synchronization branch has been merged, I can open a PR with this for testing.

comment:12 Changed 3 years ago by jamoore

  • Milestone changed from 5.x to Unscheduled
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