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Task #11161 (new)

Opened 6 years ago

Last modified 4 years ago

Bug: cli reports (wrongly) unreadable file on server shutdown

Reported by: jamoore Owned by:
Priority: major Milestone: FacilityManagers
Component: General Version: OMERO-5.2.0
Keywords: n.a. Cc: fs@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

13-06-19 11:26:41,166 1167486    [      main] ERROR     ome.formats.importer.cli.ErrorHandler  - UNREADABLE_FILE: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59549/59549__2013-04-03T09_44_09-Measurement1
java.io.FileNotFoundException: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59549/59549__2013-04-03T09_44_09-Measurement1
	at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:398)
	at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:596)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:364)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335)
	at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:368)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:229)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:180)
	at ome.formats.importer.cli.CommandLineImporter.<init>(CommandLineImporter.java:81)
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:479)
2013-06-19 11:26:41,166 1167486    [      main] ERROR     ome.formats.importer.cli.ErrorHandler  - UNREADABLE_FILE: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59548
java.io.FileNotFoundException: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59548
	at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:398)
	at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:596)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335)
	at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:368)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:229)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:180)
	at ome.formats.importer.cli.CommandLineImporter.<init>(CommandLineImporter.java:81)
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:479)
2013-06-19 11:26:41,252 1167572    [      main] INFO      ome.formats.importer.ImportCandidates  - 2308 file(s) parsed into 183 group(s) with 184 call(s) to setId in 1162796ms. (1166374ms total) [0 unknowns]
2013-06-19 11:26:43,720 1170040    [      main] INFO       ome.formats.OMEROMetadataStoreClient  - Attempting initial SSL connection to localhost:4064
2013-06-19 11:26:45,191 1171511    [      main] ERROR  formats.importer.cli.CommandLineImporter  - Error during import process.
Ice.ConnectionRefusedException
    error = 0
	at IceInternal.Network.doFinishConnect(Network.java:417)
	at IceSSL.TransceiverI.initialize(TransceiverI.java:37)
	at Ice.ConnectionI.initialize(ConnectionI.java:1536)
	at Ice.ConnectionI.socketReady(ConnectionI.java:1116)
	at Ice.ConnectionI$SocketReadyCallback.socketReady(ConnectionI.java:2299)
	at IceInternal.SelectorThread.run(SelectorThread.java:203)
	at IceInternal.SelectorThread$HelperThread.run(SelectorThread.java:273)
Caused by: java.net.ConnectException: Connection refused
	at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
	at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:574)
	at IceInternal.Network.doFinishConnect(Network.java:393)
	... 6 more

Change History (2)

comment:1 Changed 4 years ago by jamoore

  • Milestone changed from 5.x to Unscheduled

comment:2 Changed 4 years ago by jburel

  • Milestone changed from Unscheduled to FacilityManagers
  • Version set to OMERO-5.2.0
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