id,summary,reporter,owner,description,type,status,priority,milestone,component,version,resolution,keywords,cc,drp_resources,i_links,o_links,remaining_time,sprint 11161,Bug: cli reports (wrongly) unreadable file on server shutdown,jamoore,,"{{{ 13-06-19 11:26:41,166 1167486 [ main] ERROR ome.formats.importer.cli.ErrorHandler - UNREADABLE_FILE: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59549/59549__2013-04-03T09_44_09-Measurement1 java.io.FileNotFoundException: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59549/59549__2013-04-03T09_44_09-Measurement1 at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:398) at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:596) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:364) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335) at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:368) at ome.formats.importer.ImportCandidates.(ImportCandidates.java:229) at ome.formats.importer.ImportCandidates.(ImportCandidates.java:180) at ome.formats.importer.cli.CommandLineImporter.(CommandLineImporter.java:81) at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:479) 2013-06-19 11:26:41,166 1167486 [ main] ERROR ome.formats.importer.cli.ErrorHandler - UNREADABLE_FILE: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59548 java.io.FileNotFoundException: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59548 at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:398) at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:596) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335) at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:368) at ome.formats.importer.ImportCandidates.(ImportCandidates.java:229) at ome.formats.importer.ImportCandidates.(ImportCandidates.java:180) at ome.formats.importer.cli.CommandLineImporter.(CommandLineImporter.java:81) at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:479) 2013-06-19 11:26:41,252 1167572 [ main] INFO ome.formats.importer.ImportCandidates - 2308 file(s) parsed into 183 group(s) with 184 call(s) to setId in 1162796ms. (1166374ms total) [0 unknowns] 2013-06-19 11:26:43,720 1170040 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064 2013-06-19 11:26:45,191 1171511 [ main] ERROR formats.importer.cli.CommandLineImporter - Error during import process. Ice.ConnectionRefusedException error = 0 at IceInternal.Network.doFinishConnect(Network.java:417) at IceSSL.TransceiverI.initialize(TransceiverI.java:37) at Ice.ConnectionI.initialize(ConnectionI.java:1536) at Ice.ConnectionI.socketReady(ConnectionI.java:1116) at Ice.ConnectionI$SocketReadyCallback.socketReady(ConnectionI.java:2299) at IceInternal.SelectorThread.run(SelectorThread.java:203) at IceInternal.SelectorThread$HelperThread.run(SelectorThread.java:273) Caused by: java.net.ConnectException: Connection refused at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method) at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:574) at IceInternal.Network.doFinishConnect(Network.java:393) ... 6 more }}}",task,new,major,FacilityManagers,General,OMERO-5.2.0,,,fs@…,,,,,