Task #11161 (new)
Opened 6 years ago
Last modified 3 years ago
Bug: cli reports (wrongly) unreadable file on server shutdown
| Reported by: | jamoore | Owned by: | |
|---|---|---|---|
| Priority: | major | Milestone: | FacilityManagers |
| Component: | General | Version: | OMERO-5.2.0 |
| Keywords: | n.a. | Cc: | fs@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
13-06-19 11:26:41,166 1167486 [ main] ERROR ome.formats.importer.cli.ErrorHandler - UNREADABLE_FILE: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59549/59549__2013-04-03T09_44_09-Measurement1
java.io.FileNotFoundException: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59549/59549__2013-04-03T09_44_09-Measurement1
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:398)
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:596)
at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367)
at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:364)
at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335)
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:368)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:229)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:180)
at ome.formats.importer.cli.CommandLineImporter.<init>(CommandLineImporter.java:81)
at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:479)
2013-06-19 11:26:41,166 1167486 [ main] ERROR ome.formats.importer.cli.ErrorHandler - UNREADABLE_FILE: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59548
java.io.FileNotFoundException: /home/omero/slave/workspace/OMERO-merge-develop/src/dist/Operetta/59548
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:398)
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:596)
at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367)
at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335)
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:368)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:229)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:180)
at ome.formats.importer.cli.CommandLineImporter.<init>(CommandLineImporter.java:81)
at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:479)
2013-06-19 11:26:41,252 1167572 [ main] INFO ome.formats.importer.ImportCandidates - 2308 file(s) parsed into 183 group(s) with 184 call(s) to setId in 1162796ms. (1166374ms total) [0 unknowns]
2013-06-19 11:26:43,720 1170040 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064
2013-06-19 11:26:45,191 1171511 [ main] ERROR formats.importer.cli.CommandLineImporter - Error during import process.
Ice.ConnectionRefusedException
error = 0
at IceInternal.Network.doFinishConnect(Network.java:417)
at IceSSL.TransceiverI.initialize(TransceiverI.java:37)
at Ice.ConnectionI.initialize(ConnectionI.java:1536)
at Ice.ConnectionI.socketReady(ConnectionI.java:1116)
at Ice.ConnectionI$SocketReadyCallback.socketReady(ConnectionI.java:2299)
at IceInternal.SelectorThread.run(SelectorThread.java:203)
at IceInternal.SelectorThread$HelperThread.run(SelectorThread.java:273)
Caused by: java.net.ConnectException: Connection refused
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:574)
at IceInternal.Network.doFinishConnect(Network.java:393)
... 6 more
Change History (2)
comment:1 Changed 3 years ago by jamoore
- Milestone changed from 5.x to Unscheduled
comment:2 Changed 3 years ago by jburel
- Milestone changed from Unscheduled to FacilityManagers
- Version set to OMERO-5.2.0
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