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Task #11257 (closed)

Opened 11 years ago

Closed 11 years ago

Bug: MINC 2.0 data not correctly supported

Reported by:	mlinkert	Owned by:	mlinkert
Priority:	major	Milestone:	Testing and Docs
Component:	Bio-Formats	Version:	4.4.8
Keywords:	n.a.	Cc:	bf@…, kevin@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	Testing and Docs (1)

Description

See one example in minc/bigbrain/; many more examples from http://bigbrain.loris.ca

This exception is thrown because the "image" variable is not in the expected location:

Exception in thread "main" java.lang.NullPointerException
	at loci.formats.services.NetCDFServiceImpl.getArray(NetCDFServiceImpl.java:168)
	at loci.formats.services.NetCDFServiceImpl.getVariableValue(NetCDFServiceImpl.java:150)
	at loci.formats.in.MINCReader.initFile(MINCReader.java:165)
	at loci.formats.FormatReader.setId(FormatReader.java:1333)
	at loci.formats.ImageReader.setId(ImageReader.java:762)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:564)
	at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:1017)
	at loci.formats.tools.ImageInfo.main(ImageInfo.java:1062)

References

Change History (2)

comment:1 Changed 11 years ago by mlinkert

Cc kevin@… added

comment:2 Changed 11 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

Pull request opened: https://github.com/openmicroscopy/bioformats/pull/605

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