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Task #11296 (closed)

Opened 7 years ago

Closed 5 years ago

BUG: Uncaught NullPointerException

Reported by: rkferguson Owned by: jburel
Priority: major Milestone: 5.x
Component: Insight Version: 4.4.8
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by rkferguson)

On Warlock using latest release on Mac as ben in Nevis Group (Collab) - read-annotate

Ran "Combine Images" script on 2 same-sized .dv s owned by kyle - IDs: 2045 and 2055.

Script appeared to run fine, reported completed in the activity window - clicked on "Go to Image" in options. Received following fatal crash error message shown below.

When I reopened and viewed group - combined image had been created: combinedImage ID: 2498.

However this image appears only in grey scale, even when toggled to colour. See attached screenshot.

Also noticed that it only has 85 z sections where both of the images that were combined had 85 each. The combined image appears to comprise only the second of the images used.

java.lang.Exception: Abnormal termination due to an uncaught exception.
java.lang.NullPointerException
	at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerComponent.browse(TreeViewerComponent.java:2963)
	at org.openmicroscopy.shoola.agents.treeviewer.browser.BrowserComponent.browse(BrowserComponent.java:1733)
	at org.openmicroscopy.shoola.agents.treeviewer.RefreshExperimenterDataLoader.handleResult(RefreshExperimenterDataLoader.java:417)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:90)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
	at java.awt.EventQueue.access$400(EventQueue.java:82)
	at java.awt.EventQueue$2.run(EventQueue.java:676)
	at java.awt.EventQueue$2.run(EventQueue.java:674)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Abnormal termination due to an uncaught exception.
java.lang.NullPointerException
	at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerComponent.browse(TreeViewerComponent.java:2963)
	at org.openmicroscopy.shoola.agents.treeviewer.browser.BrowserComponent.browse(BrowserComponent.java:1733)
	at org.openmicroscopy.shoola.agents.treeviewer.RefreshExperimenterDataLoader.handleResult(RefreshExperimenterDataLoader.java:417)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:90)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
	at java.awt.EventQueue.access$400(EventQueue.java:82)
	at java.awt.EventQueue$2.run(EventQueue.java:676)
	at java.awt.EventQueue$2.run(EventQueue.java:674)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Exception in thread "AWT-EventQueue-0"

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:189)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:287)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:147)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:85)
	at org.openmicroscopy.shoola.env.AWTExceptionHanlder.handle(AWTExceptionHanlder.java:99)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at java.awt.EventDispatchThread.handleException(EventDispatchThread.java:412)
	at java.awt.EventDispatchThread.processException(EventDispatchThread.java:318)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:312)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

Attachments (1)

OMERO.insight.jpg (370.4 KB) - added by rkferguson 7 years ago.

Download all attachments as: .zip

Change History (3)

Changed 7 years ago by rkferguson

comment:1 Changed 7 years ago by rkferguson

  • Description modified (diff)

comment:2 Changed 5 years ago by jburel

  • Resolution set to fixed
  • Status changed from new to closed

Re-tested today
No problem noticed.

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