Task #11305 (closed)
Opened 11 years ago
Closed 10 years ago
Bug: NativeND2Reader computing image dimensions incorrectly
| Reported by: | omero-qa | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | 5.0.3 |
| Component: | Bio-Formats | Version: | 4.4.8 |
| Keywords: | ND2Reader | Cc: | jonas.dorn@…, laucius2@… |
| Resources: | n.a. | Referenced By: | https://trello.com/c/ArelsNBe/51-bug-nd2-bio-formats |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Change History (9)
comment:1 Changed 11 years ago by rleigh
- Component changed from from QA to Bio-Formats
- Owner changed from mlinkert-x to mlinkert
- Priority changed from minor to major
- Summary changed from Bug: NativeND2Reader computing image dimensions to Bug: NativeND2Reader computing image dimensions incorrectly
comment:2 Changed 11 years ago by rleigh
comment:3 Changed 11 years ago by rleigh
From Jonas:
Bug with 130606_JCC719_003.nd2: Wrong image dimensions (xyztc); xy may be transposed.
Dimensions reported by LOCI (4.5-DEV, SVN b28c5ce): 232x304x1x29x3
Dimensions reported by Elements (4.10.01): 232x304x8x20x1
comment:4 Changed 11 years ago by mtbcarroll
- Description modified (diff)
comment:5 Changed 11 years ago by rleigh
- Cc laucius2@… added
See also sample file and thread here:
https://www.openmicroscopy.org/qa2/qa/feedback/7536/
https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=5790
comment:6 Changed 11 years ago by mtbcarroll
- Description modified (diff)
comment:7 Changed 10 years ago by mlinkert
- Milestone changed from Unscheduled to 5.0.3
comment:8 Changed 10 years ago by jamoore
- Referenced By set to https://trello.com/c/ArelsNBe/51-bug-nd2-bio-formats
comment:9 Changed 10 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
PR opened for inclusion in 5.0.3: https://github.com/openmicroscopy/bioformats/pull/1182
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core metadata is being assigned multiple times
It would be nice if this reader could be refactored a bit so that the core metadata was only set up in a single place after all the format metadata blocks had been read; it's quite difficult to understand what's going on here since it can be changed/reset/resized multiple times.