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Task #11305 (closed)

Opened 8 years ago

Closed 7 years ago

Bug: NativeND2Reader computing image dimensions incorrectly

Reported by: omero-qa Owned by: mlinkert
Priority: major Milestone: 5.0.3
Component: Bio-Formats Version: 4.4.8
Keywords: ND2Reader Cc: jonas.dorn@…, laucius2@…
Resources: n.a. Referenced By: https://trello.com/c/ArelsNBe/51-bug-nd2-bio-formats
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Change History (9)

comment:1 Changed 8 years ago by rleigh

  • Component changed from from QA to Bio-Formats
  • Owner changed from mlinkert-x to mlinkert
  • Priority changed from minor to major
  • Summary changed from Bug: NativeND2Reader computing image dimensions to Bug: NativeND2Reader computing image dimensions incorrectly

comment:2 Changed 8 years ago by rleigh

core metadata is being assigned multiple times

  • line 527 (3 times; after parsing block ImageTextInf?)
  • line 820 (once; after parsing block ND2 FILEMAP)

It would be nice if this reader could be refactored a bit so that the core metadata was only set up in a single place after all the format metadata blocks had been read; it's quite difficult to understand what's going on here since it can be changed/reset/resized multiple times.

comment:3 Changed 8 years ago by rleigh

From Jonas:

Bug with 130606_JCC719_003.nd2: Wrong image dimensions (xyztc); xy may be transposed.

Dimensions reported by LOCI (4.5-DEV, SVN b28c5ce): 232x304x1x29x3
Dimensions reported by Elements (4.10.01): 232x304x8x20x1

comment:4 Changed 8 years ago by mtbcarroll

  • Description modified (diff)

comment:6 Changed 8 years ago by mtbcarroll

  • Description modified (diff)

comment:7 Changed 7 years ago by mlinkert

  • Milestone changed from Unscheduled to 5.0.3

comment:8 Changed 7 years ago by jamoore

comment:9 Changed 7 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed
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