Task #11352 (closed)
EPS import failed
Reported by: | atarkowska | Owned by: | mlinkert |
---|---|---|---|
Priority: | major | Milestone: | 5.1.1 |
Component: | Bio-Formats | Version: | 5.0.0-beta1 |
Keywords: | n.a. | Cc: | |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description (last modified by atarkowska)
java.lang.RuntimeException: Failure response on import! Category: ::omero::grid::ImportRequest Name: import-request-failure Parameters: {message=For input string: " ", stacktrace=java.lang.NumberFormatException: For input string: " " at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65) at java.lang.Integer.parseInt(Integer.java:481) at loci.formats.in.EPSReader.openBytes(EPSReader.java:184) at loci.formats.ImageReader.openBytes(ImageReader.java:416) at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:197) at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:226) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:320) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:320) at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273) at ome.services.blitz.repo.ManagedImportRequestI.parseDataByPlane(ManagedImportRequestI.java:640) at ome.services.blitz.repo.ManagedImportRequestI.parseData(ManagedImportRequestI.java:571) at ome.services.blitz.repo.ManagedImportRequestI.pixelData(ManagedImportRequestI.java:441) at ome.services.blitz.repo.ManagedImportRequestI.step(ManagedImportRequestI.java:294) at omero.cmd.HandleI.steps(HandleI.java:435) at omero.cmd.HandleI$1.doWork(HandleI.java:365) at omero.cmd.HandleI$1.doWork(HandleI.java:361) at sun.reflect.GeneratedMethodAccessor257.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:601) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:576) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:154) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy69.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:457) at omero.cmd.HandleI.run(HandleI.java:359) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at ome.services.util.Executor$Impl$1.call(Executor.java:498) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:722) } at ome.formats.importer.ImportLibrary$ImportCallback.onFinished(ImportLibrary.java:572) at omero.cmd.CmdCallbackI.finished(CmdCallbackI.java:301) at omero.cmd._CmdCallbackDisp.___finished(_CmdCallbackDisp.java:110) at omero.cmd._CmdCallbackDisp.__dispatch(_CmdCallbackDisp.java:137) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
Change History (8)
comment:1 Changed 11 years ago by atarkowska
- Description modified (diff)
comment:2 Changed 11 years ago by atarkowska
- Summary changed from import EPS failed to EPS import failed
comment:3 Changed 11 years ago by mlinkert
comment:4 Changed 11 years ago by atarkowska
- Description modified (diff)
comment:5 Changed 11 years ago by atarkowska
- Description modified (diff)
comment:6 Changed 9 years ago by mlinkert
- Component changed from Import to Bio-Formats
- Milestone changed from Unscheduled to 5.1.1
Moving to 5.1.1 for triage.
comment:7 Changed 9 years ago by mlinkert
- Resolution set to duplicate
- Status changed from new to closed
See https://github.com/openmicroscopy/bioformats/pull/1710; duplicate of #4102.
comment:8 Changed 9 years ago by Melissa Linkert <melissa@…>
(In [7edb5b6c4309a8483a40e419b77d80086e647808/bioformats.git] on branch develop) EPS: consistently detect vector data
This doesn't add support for vector data, but does a better job of
setting the dimensions and throwing a consistent exception during
openBytes.
Corresponding file is in QA 7556.