EPS import failed

[atarkowska]

java.lang.RuntimeException: Failure response on import!
Category: ::omero::grid::ImportRequest
Name: import-request-failure
Parameters: {message=For input string: " ", stacktrace=java.lang.NumberFormatException: For input string: " "
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:481)
at loci.formats.in.EPSReader.openBytes(EPSReader.java:184)
at loci.formats.ImageReader.openBytes(ImageReader.java:416)
at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:197)
at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:226)
at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:320)
at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:320)
at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273)
at ome.services.blitz.repo.ManagedImportRequestI.parseDataByPlane(ManagedImportRequestI.java:640)
at ome.services.blitz.repo.ManagedImportRequestI.parseData(ManagedImportRequestI.java:571)
at ome.services.blitz.repo.ManagedImportRequestI.pixelData(ManagedImportRequestI.java:441)
at ome.services.blitz.repo.ManagedImportRequestI.step(ManagedImportRequestI.java:294)
at omero.cmd.HandleI.steps(HandleI.java:435)
at omero.cmd.HandleI$1.doWork(HandleI.java:365)
at omero.cmd.HandleI$1.doWork(HandleI.java:361)
at sun.reflect.GeneratedMethodAccessor257.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:576)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy69.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:457)
at omero.cmd.HandleI.run(HandleI.java:359)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at ome.services.util.Executor$Impl$1.call(Executor.java:498)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
}


at ome.formats.importer.ImportLibrary$ImportCallback.onFinished(ImportLibrary.java:572)
at omero.cmd.CmdCallbackI.finished(CmdCallbackI.java:301)
at omero.cmd._CmdCallbackDisp.___finished(_CmdCallbackDisp.java:110)
at omero.cmd._CmdCallbackDisp.__dispatch(_CmdCallbackDisp.java:137)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

[mlinkert]

Corresponding file is in QA 7556.

[mlinkert]

Moving to 5.1.1 for triage.

[mlinkert]

See ​https://github.com/openmicroscopy/bioformats/pull/1710; duplicate of #4102.

[Melissa Linkert <melissa@…>]

(In [7edb5b6c4309a8483a40e419b77d80086e647808/bioformats.git] on branch develop) EPS: consistently detect vector data

This doesn't add support for vector data, but does a better job of
setting the dimensions and throwing a consistent exception during
openBytes.

See #11352, see #11353.