Task #11356 (closed)
Opened 6 years ago
Closed 4 years ago
JPEG import failed
| Reported by: | atarkowska | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | 5.1.3 |
| Component: | Bio-Formats | Version: | 5.0.0-beta1 |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description (last modified by atarkowska)
java.lang.NullPointerException at loci.formats.in.TileJPEGReader.initFile(TileJPEGReader.java:130) at loci.formats.FormatReader.setId(FormatReader.java:1333) at loci.formats.DelegateReader.setId(DelegateReader.java:275) at loci.formats.in.JPEGReader.setId(JPEGReader.java:85) at loci.formats.ImageReader.setId(ImageReader.java:762) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:564) at loci.formats.ChannelFiller.setId(ChannelFiller.java:263) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:564) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:274) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:564) at loci.formats.Memoizer.setId(Memoizer.java:399) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:564) at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:414) at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:596) at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:371) at ome.formats.importer.ImportCandidates.(ImportCandidates.java:229) at ome.formats.importer.ImportCandidates.(ImportCandidates.java:180) at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportCandidates(OMEROGateway.java:6455) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1170) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680)
Change History (8)
comment:1 Changed 6 years ago by atarkowska
- Description modified (diff)
comment:2 Changed 6 years ago by atarkowska
comment:3 Changed 6 years ago by atarkowska
- Description modified (diff)
comment:4 Changed 6 years ago by mlinkert
The file for QA 7557 somehow didn't get uploaded. Ola, could you please put the file somewhere under /ome/team/ and then I'll copy it into the repository for testing?
comment:5 Changed 4 years ago by mlinkert
- Component changed from Import to Bio-Formats
- Milestone changed from Unscheduled to 5.1.1
Moving to 5.1.1 for triage.
comment:6 Changed 4 years ago by jburel
Ola put the file under ome/team/atarkowska/SE logo (cmyk)-1.jpg
A new error:
java.io.IOException: tjDecompressHeader2(): Could not determine subsampling type for JPEG image at loci.formats.services.JPEGTurboServiceImpl.getTile(JPEGTurboServiceImpl.java:332) at loci.formats.services.JPEGTurboServiceImpl.getTile(JPEGTurboServiceImpl.java:238) at loci.formats.in.TileJPEGReader.openBytes(TileJPEGReader.java:85)
comment:7 Changed 4 years ago by mlinkert
- Milestone changed from 5.1.1 to 5.1.3
comment:8 Changed 4 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
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Corresponding file is in QA 7557.