RFE: viewing orphaned samples in Insight

[mtbcarroll]

I have the suspicion that if I have a plate with both some well samples from runs and some "orphaned" samples not from runs, clicking on the plate (not run) in Insight doesn't show me in the data browser the samples that aren't in a run. Unfortunately, I don't have any good test data handy for confirming this.

[wmoore]

One way to create some test data would be to modify the Dataset_To_Plate.py script to use an existing Plate, instead of creating one.
This adds wells & images to a Plate without creating a Acquisition/Run?. I could have a go at this if you want?

[mtbcarroll]

If it wouldn't be too much trouble, that would be great. (Also, I don't know if Andrew can easily construct something suitable.)

[jamoore]

Moving for closer review with the rest of the dangling 4.4 work.

[jburel]

Will: did you generate some sample files to test that ticket?

[wmoore]

No - I haven't. Maybe we shouldn't try fixing this "BUG" unless we know of some data that causes the bug?

[mtbcarroll]

Just import a regular plate with runs and null one of the samples' plate acquisition property in the DB?

[mtbcarroll]

I constructed one: see user-5 read-write-1, screen "Trac #11486". The samples in the first eight wells are not in a run, the other half are. Insight won't show me the first half at all, Web shows me all of them but all in the run.

mtbc@ls28101:~/src/openmicroscopy$ omero hql "SELECT s.id, w.column FROM Well w, WellSample s WHERE w.plate = 1465 AND s.well = w AND s.plateAcquisition IS NULL"
Using session 05db7b76-cfa7-4158-bc2c-5095ccadce1b (user-5@trout.openmicroscopy.org:4064). Idle timeout: 10.0 min. Current group: read-write-1
 # | Col1  | Col2 
---+-------+------
 0 | 14699 | 2    
 1 | 14696 | 5    
 2 | 14694 | 3    
 3 | 14692 | 4    
 4 | 14691 | 6    
 5 | 14689 | 1    
 6 | 14688 | 7    
 7 | 14701 | 0    
(8 rows)

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mtbc@ls28101:~/src/openmicroscopy$ omero hql "SELECT s.id, w.column FROM Well w, WellSample s WHERE w.plate = 1465 AND s.well = w AND s.plateAcquisition IS NOT NULL"
Using session 05db7b76-cfa7-4158-bc2c-5095ccadce1b (user-5@trout.openmicroscopy.org:4064). Idle timeout: 10.0 min. Current group: read-write-1
 # | Col1  | Col2 
---+-------+------
 0 | 14700 | 9    
 1 | 14698 | 8    
 2 | 14697 | 14   
 3 | 14695 | 15   
 4 | 14693 | 10   
 5 | 14690 | 13   
 6 | 14687 | 11   
 7 | 14686 | 12   
(8 rows)

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[jamoore]

Referencing ticket #11752 has changed sprint.

[jamoore]

Referencing ticket #11752 has changed sprint.

[jamoore]

Splitting 5.1.4 due to milestone decoupling