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Task #11535 (closed)

Opened 11 years ago

Closed 8 years ago

Last modified 8 years ago

Bug: Hamamatsu VMS files have incorrect dimensions

Reported by: mlinkert Owned by: mlinkert
Priority: major Milestone: B-F-5.2.0
Component: Bio-Formats Version: 5.0.0-beta1
Keywords: HamamatsuVMSReader, our-fault, external Cc: matthias.baldauf@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description

See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-October/003963.html and the follow-up http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-October/003971.html

While all of the files are picked up for the CMU-{1, 2, 3} datasets, the width and height are only set to match the first tile. This should be changed to match the width/height of the tiles after they have been stitched together.

Change History (6)

comment:1 Changed 9 years ago by mlinkert

  • Milestone changed from Unscheduled to 5.1.1

Moving to 5.1.1 for triage.

comment:2 Changed 9 years ago by mlinkert

  • Milestone changed from 5.1.1 to 5.2.0-m1

This is going to require a near rewrite of VMS support; scheduling for 5.2.0 given the breaking nature.

comment:3 Changed 9 years ago by jamoore

  • Milestone changed from 5.2.0 to B-F-5.2.0

Splitting due to milestone decoupling.

comment:4 Changed 8 years ago by mlinkert

Further investigation needed to know just how bad a reworking of VMS support will be (we have a lot more pathology format experience than we did a year ago). I'll either fix or have more detailed comments for what needs to happen before end of March.

comment:5 Changed 8 years ago by mlinkert

  • Keywords HamamatsuVMSReader our-fault external added
  • Resolution set to fixed
  • Status changed from new to closed

comment:6 Changed 8 years ago by Melissa Linkert <melissa@…>

  • Remaining Time set to 0

(In [8e0666ea0fa636afdad9d1e03290b969e88ba831/bioformats.git] on branch develop) Hamamatsu VMS: fix dimensions of full-resolution image

Fixes #11535.

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