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Task #11569 (closed)

Opened 10 years ago

Closed 10 years ago

Bug: Bio-Formats Exporter fails with RGB images

Reported by:	crueden-x	Owned by:	mlinkert
Priority:	critical	Milestone:	5.0.3
Component:	Bio-Formats	Version:	4.4.9
Keywords:	n.a.	Cc:
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

When attempting to save a multi-frame RGB image, such as the "Fly Brain" sample, from Fiji using the Bio-Formats Exporter plugin, the following exception results:

(Fiji Is Just) ImageJ 1.48e; Java 1.6.0_45 [64-bit]; Mac OS X 10.9; 51MB of 5067MB (1%)
 
java.lang.IllegalArgumentException: ZCT size vs image count mismatch (sizeZ=57, sizeC=3, sizeT=1, total=57)
	at loci.formats.FormatTools.getZCTCoords(FormatTools.java:435)
	at loci.plugins.out.Exporter.run(Exporter.java:556)
	at loci.plugins.LociExporter.run(LociExporter.java:77)

References

Change History (3)

comment:1 Changed 10 years ago by jamoore

Summary changed from Bio-Formats Exporter fails with RGB images to Bug: Bio-Formats Exporter fails with RGB images

comment:2 Changed 10 years ago by mlinkert

Milestone changed from Unscheduled to 5.0.3

comment:3 Changed 10 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

PR opened: https://github.com/openmicroscopy/bioformats/pull/1175

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