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Task #11743 (closed)

Opened 10 years ago

Closed 10 years ago

Last modified 10 years ago

Bug: Flex import failure, and import log download failure

Reported by: mtbcarroll Owned by: jburel
Priority: critical Milestone: 5.0.0-rc1
Component: Insight Version: 5.0.0-beta1
Keywords: n.a. Cc: ux@…, christophe.trefois@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.


https://www.openmicroscopy.org/qa2/qa/feedback/7711/ carries the Insight log from a failed flex file import (after selecting the .mea file) which appears to die from a,

failed unencrypted keep alive:Ice.DNSException

ending up with a ErrorIce.ConnectionLostException while doing OMEROGateway.loadSpecifiedAnnotationsLinkedTo.

Further log output is provided at http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-November/004083.html which shows an NPE at https://github.com/openmicroscopy/openmicroscopy/blob/v.5.0.0-beta1/components/insight/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java#L3766 viz.

final long size = of.getSize().getValue();

which follows close on the heels of,

[.shoola.env.ui.DownloadAndLaunchActivity] (entQueue-0) C:\Users\Megatron\omero\filesOmero\importLog_730

Change History (7)

comment:1 Changed 10 years ago by mtbcarroll

  • Summary changed from Bug: Insight gateway NPE on null size on original file for metadata download to Bug: Flex import failure, and import log download failure

comment:2 Changed 10 years ago by jamoore

  • Milestone changed from 5.0.0 to 5.0.0-beta2
  • Priority changed from minor to major

comment:3 Changed 10 years ago by jamoore

  • Priority changed from major to critical

Fix for the NPE has been opened as https://github.com/openmicroscopy/openmicroscopy/pull/1829

This does not explain why it happened in the flex case described on the mailing list nor whether or not there's a work-around before beta2 comes out. That will require further investigation.

comment:4 Changed 10 years ago by jmoore <josh@…>

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from new to closed

(In [5c58b3bf842c45ea38ef37a8e183bdd139ee60bf/ome.git] on branch develop) Read size remotely if value is null (Fix #11743)

If a file has not yet been updated by the server,
then the size field could still be null. In that
case, we ask the service to tell us the size.

comment:5 Changed 10 years ago by jmoore <josh@…>

(In [e4b38bd6a0ae5ee44b16cf71c893151140720d03/ome.git] on branch develop) Passing test in test_rawfilestore.py (See #11743)

Shows that loading the size from the service is possible
even when the size field itself is None/null.

comment:6 Changed 10 years ago by jean-marie burel <j.burel@…>

(In [8c37524085c9e494742d0bd8ad0f8991502d67fe/ome.git] on branch develop) Merge pull request #1829 from joshmoore/11743-null-size

Read size remotely if value is null (Fix #11743)

comment:7 Changed 10 years ago by jamoore

  • Cc christophe.trefois@… added
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