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Task #11796 (closed)

Opened 10 years ago

Closed 10 years ago

Adjust dimensions for stopped Micro-manager acquisitions

Reported by: mlinkert Owned by: mlinkert
Priority: minor Milestone: 5.0.2
Component: Bio-Formats Version: 4.4.9
Keywords: n.a. Cc: davidaknecht@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.


See dataset in micromanager/dave/stopped/. The metadata.txt file records the original acquisition parameters, but doesn't note if the acquisition was stopped; the only way to tell is if TIFF files are missing.

We won't always be able to fully adjust the dimensions so that blank planes do not appear, but in most cases it should be possible to reduce the dimensions so that they closely match what was actually acquired.

Change History (2)

comment:1 Changed 10 years ago by mlinkert

  • Milestone changed from Unscheduled to 5.0.2

Proposed fix in https://github.com/openmicroscopy/bioformats/pull/998; needs to be verified prior to 5.0.2.

comment:2 Changed 10 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed

https://github.com/openmicroscopy/bioformats/pull/998 was updated to fix this, and has been merged. The current daily build from http://downloads.openmicroscopy.org/bio-formats/5.0.0/ should contain the fix, as will 5.0.2.

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