Task #11921 (closed)
Opened 10 years ago
Closed 8 years ago
BUG: Extra warnings in searcher on png
Reported by: | pwalczysko | Owned by: | |
---|---|---|---|
Priority: | major | Milestone: | Partner-1 |
Component: | General | Version: | 5.0.0-rc1 |
Keywords: | OMERO.searcher | Cc: | ux@…, spli |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
When testing locally (omero 5.0 server) the OMERO.searcher, got following warning after calculation of the Features using OMERO.web script.
The Feature calculation was run on a dataset which consists of two small png images only. Although there were warnings, the features were calculated okay and search worked. Notably, there was just prior to this run on an omero5 server an omero4 server running. The OMERO.searcher install script was just re-run on this new, omero5 server.
/Users/petr/Work/omero_searcher/searcherenv/lib/python2.7/site-packages/scipy/ndimage/interpolation.py:532: UserWarning: From scipy 0.13.0, the output shape of zoom() is calculated with round() instead of int() - for these inputs the size of the returned array has changed. "the returned array has changed.", UserWarning) /Users/petr/Work/omero_searcher/searcherenv/lib/python2.7/site-packages/pyslic/features/edgefeatures.py:65: RuntimeWarning: invalid value encountered in double_scalars A = edges.sum()/binimg.sum() /Users/petr/Work/omero_searcher/searcherenv/lib/python2.7/site-packages/mahotas/features/tas.py:124: RuntimeWarning: invalid value encountered in double_scalars std = pixels.std()
Change History (3)
comment:1 Changed 10 years ago by pwalczysko
comment:2 Changed 10 years ago by jamoore
- Milestone changed from 5.0.0 to Partner-1
comment:3 Changed 8 years ago by jamoore
- Cc changed from ux@openmicroscopy.org.uk, spli to ux@openmicroscopy.org.uk, spli
- Resolution set to wontfix
- Status changed from new to closed
Cleaning up searcher backlog.
See https://github.com/openmicroscopy/omero_searcher/pull/18