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Task #11921 (closed)

Opened 7 years ago

Closed 5 years ago

BUG: Extra warnings in searcher on png

Reported by: pwalczysko Owned by:
Priority: major Milestone: Partner-1
Component: General Version: 5.0.0-rc1
Keywords: OMERO.searcher Cc: ux@…, spli
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.


When testing locally (omero 5.0 server) the OMERO.searcher, got following warning after calculation of the Features using OMERO.web script.
The Feature calculation was run on a dataset which consists of two small png images only. Although there were warnings, the features were calculated okay and search worked. Notably, there was just prior to this run on an omero5 server an omero4 server running. The OMERO.searcher install script was just re-run on this new, omero5 server.

/Users/petr/Work/omero_searcher/searcherenv/lib/python2.7/site-packages/scipy/ndimage/ UserWarning: From scipy 0.13.0, the output shape of zoom() is calculated with round() instead of int() - for these inputs the size of the returned array has changed.
  "the returned array has changed.", UserWarning)
/Users/petr/Work/omero_searcher/searcherenv/lib/python2.7/site-packages/pyslic/features/ RuntimeWarning: invalid value encountered in double_scalars
  A = edges.sum()/binimg.sum()
/Users/petr/Work/omero_searcher/searcherenv/lib/python2.7/site-packages/mahotas/features/ RuntimeWarning: invalid value encountered in double_scalars
  std = pixels.std()

Change History (3)

comment:2 Changed 7 years ago by jamoore

  • Milestone changed from 5.0.0 to Partner-1

comment:3 Changed 5 years ago by jamoore

  • Cc changed from, spli to, spli
  • Resolution set to wontfix
  • Status changed from new to closed

Cleaning up searcher backlog.

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