Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #11972 (closed)

Opened 8 years ago

Closed 8 years ago

Bug: fix dimension detection and plane reading for truncated Micromanager datasets

Reported by: mlinkert Owned by: mlinkert
Priority: major Milestone: 5.0.1
Component: Bio-Formats Version: 5.0.0-rc1
Keywords: n.a. Cc: david.knecht@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.


See http://www.openmicroscopy.org/community/viewtopic.php?f=13&t=7406#p13356 and QA 7885.

The metadata.txt file for truncated datasets (i.e. prematurely stopped acquisitions) still contains the metadata for the acquisition as it was first defined - so more planes than actually exist are present. setId needs to check if each file exists and reset the Z, C, and T dimensions accordingly.

Change History (1)

comment:1 Changed 8 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.64027 sec.)

We're Hiring!